Salvelinus fontinalis (brook trout): 129820010
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Entry
129820010 CDS
T11136
Name
(RefSeq) collagen alpha-1(IX) chain-like isoform X1
KO
K08131
collagen type IX alpha
Organism
sfon Salvelinus fontinalis (brook trout)
Pathway
sfon04510
Focal adhesion
sfon04512
ECM-receptor interaction
sfon04820
Cytoskeleton in muscle cells
Brite
KEGG Orthology (KO) [BR:
sfon00001
]
09130 Environmental Information Processing
09133 Signaling molecules and interaction
04512 ECM-receptor interaction
129820010
09140 Cellular Processes
09144 Cellular community - eukaryotes
04510 Focal adhesion
129820010
09142 Cell motility
04820 Cytoskeleton in muscle cells
129820010
09180 Brite Hierarchies
09183 Protein families: signaling and cellular processes
00535 Proteoglycans [BR:
sfon00535
]
129820010
Proteoglycans [BR:
sfon00535
]
Extracellular matrix (ECM) proteoglycans
Others
129820010
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Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Collagen
Laminin_G_3
Laminin_G_2
Motif
Other DBs
NCBI-GeneID:
129820010
NCBI-ProteinID:
XP_055732772
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Position
22:20623939..20651882
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AA seq
954 aa
AA seq
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MEHHCAVLTRKRPWHPAMLLYSSTCMALLSLLLSPALSQLDLNRLDGDTAVCPPMRNGQD
DLPGFDLITQFQLDVIPLKGVRKVEGSTPLQVAYRLDKEANFQIPTRLNFPRGFPDEYSV
MVTFRMIKNTVNKVWNVWQVVDEDGRKQAGLRLNGDQQALEYFLMGQDGNLQTVTFPGLS
VLFNTKWHKMMIGVERDQVTLYVDCQPVDKKPIKGKGPVNTEGDTLIGRLDIDADASVVF
ELQWMLIHCDPKRANRENCQELPAIEMYANAEPDPKPVPGPLGPTGPEGPRGPHGEDGRD
GRDGLPGSPGSAGTTGAKGDQGEIGLPGQRGLSGLPGASGVPGSMGPRGPVGERGLQGFP
GPAGSPGPETVGPPGPPGKAGTPGDDGNIGPEGPPGPRGGLGLPGPAGLPGPPGPVGPPG
AGKAEGSGDDCPAACPAGPQGNPGLSGMKGHKGLPGDNGAAGEAGQKGEPGPSGVQGLTG
KMGDDGQRGSAGFPGSSGDKGDRGPPGFNGIPGPTGPPGSPGMEGIRGRQGLEGEKGDDG
AIGPRGDQGPVGAKGDTGTPGADGMDGLPGVDGAKGGAGVPGTVGIRGVVGIPGFPGKQG
LVGAGGAKGDTGADGPVGSIGGPGKTGATGPAGEDGKPGDKGTTGETGKQGPVGVTGDTG
MQGDKGDKGDTGEKGLKGHTGYKGDQGPIGPTGPKGSEGDPGLTGVSGVKGDQGPSGVPG
IKGEVGEKGMRGYTGENGRPGQPGHEGLTGPQGANGLEGERGLHGSPGPRGLPGPKMNDI
KLREVCSAIVEEHLAELKKEVLKKPAAIGAPGMAGLRGPAGPPGPAGTAGEAGPRGLMGM
KGPPGYFGLPGTPGKQGDAGVKGDTGHKGENGVGIPGSSGEPGPQGVAGVPGIGKDGKDG
APGKDGVNGSPGASGSRGATGAPGYCDPSNCIGSPPPLYMMSGGKKSSSYSKGP
NT seq
2865 nt
NT seq
+upstream
nt +downstream
nt
atggagcaccactgtgctgtcttgacaaggaagcgaccatggcacccagcaatgttgctg
tactcctctacctgcatggccctcctctctctgctactctctcctgccctcagccagtta
gatctcaacaggttagatggggacacagctgtctgccctcccatgagaaatggacaagat
gaccttccagggttcgatctgatcacccagttccagttggatgttattcctctgaagggg
gtgaggaaggtggagggctccactcctctccaggtggcataccgcctcgataaggaggcc
aacttccagattcctaccaggctcaatttcccccggggtttccctgacgagtactccgtc
atggtcacattccgtatgatcaagaacacggtgaacaaggtgtggaacgtgtggcaggtg
gtggacgaggacggacggaagcaggcggggctcaggctaaatggagaccagcaagccttg
gagtacttcctgatgggccaggatggcaacctgcagaccgtcaccttcccagggctctct
gtgttgttcaacaccaagtggcacaagatgatgattggggtggagagagaccaggtcacc
ctgtatgtggactgtcagcccgtggacaagaagcccatcaaggggaaaggccccgtcaac
accgagggagatacacttattgggaggctggacattgacgctgatgcttctgttgtgttt
gaactccagtggatgctgatccattgtgacccaaagagagccaatagagagaactgccaa
gagctgcctgccatagagatgtatgccaatgctgagcctgaccccaagcctgtccctggc
cctcttggtcccactggccctgaggggccccgggggccacacggagaggacggcagagac
ggcagagatggccttccaggttcacctggcagtgctggcactactggggccaaaggtgac
cagggggagatcggtttgcctggacagagaggcctgtctggcttaccaggagcttctgga
gtgcctggttcaatgggcccaagaggacctgtgggcgagagaggacttcaaggttttcct
ggaccagcaggctctcccggccctgagacagttggaccccccggcccgcctgggaaagca
ggaactccaggagacgatgggaacattgggcctgagggtccccctgggcctagagggggt
ctgggtctccctggtcccgctggtctaccaggaccacctggacctgtgggaccacctggg
gctggaaaagctgaggggagtggggatgattgccctgctgcctgtccagcgggaccacag
ggaaacccagggctatcagggatgaagggacacaagggattaccaggtgacaatggagct
gcaggtgaagctggacaaaagggtgagcctggaccatctggggtgcagggcctaacaggc
aagatgggagatgatggacaaagaggtagtgctggttttcctggtagttctggagataaa
ggagacaggggtccccctggtttcaacggcatcccaggacccaccggaccaccgggttct
cctggtatggagggcattcgtggacgtcagggtctggagggagaaaaaggtgatgatgga
gccatcggtcctcgaggagatcagggtcctgttggtgcaaagggagacactggtactcct
ggggcagacggcatggatggactccctggagtggatggagctaagggaggagctggcgtt
cctgggactgtaggaatcaggggtgtcgtcggaattccaggtttcccaggaaagcagggg
ctggttggagctggaggtgccaagggtgacacaggagctgacggaccagtaggatcaatc
ggaggtcctgggaaaacaggggcaactggaccagcaggagaagatggaaaaccaggagac
aaaggaactactggcgagaccggaaagcagggaccagtgggggtcacaggtgatacaggc
atgcagggtgacaaaggggacaaaggtgacactggtgaaaagggactgaagggtcacact
ggatacaagggagaccaaggtcctattggtcccactggcccaaagggaagtgaaggtgat
ccaggtcttacaggagtttctggagtcaagggagaccagggtccttctggtgttcctgga
atcaaaggagaggttggagagaagggcatgaggggatataccggggaaaatggtagacca
gggcagccgggtcatgagggtttgaccggtccccagggagccaatggactggagggagag
agagggttacatggatcacctgggcctagaggcctacccggtcctaaaatgaatgatatc
aaacttcgcgaagtatgctcagcaattgttgaagaacacttagcagagcttaagaaagag
gtcctaaagaaaccagcagcgatcggggcccctggaatggcaggactgcggggccccgca
ggtccaccgggcccagcagggactgcaggagaggccggtcccagaggactgatgggaatg
aagggaccacctggatactttgggttaccaggcacacctggaaaacaaggtgatgctggt
gtaaagggggatacaggacataagggagaaaacggagtgggaatcccaggaagttcaggc
gagccaggcccacaaggtgtggctggcgtccctggcatcgggaaggacggtaaagatgga
gctcccggtaaagacggtgttaatggtagcccaggtgcctctggttccaggggagctaca
ggagccccagggtattgtgacccctcaaactgtataggcagtcccccacctctctatatg
atgagtggggggaaaaaatcctccagctacagcaaggggccgtga
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