Salvelinus fontinalis (brook trout): 129821306
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Entry
129821306 CDS
T11136
Name
(RefSeq) sodium channel protein type 1 subunit alpha-like isoform X1
KO
K04834
voltage-gated sodium channel type II alpha
Organism
sfon Salvelinus fontinalis (brook trout)
Brite
KEGG Orthology (KO) [BR:
sfon00001
]
09180 Brite Hierarchies
09183 Protein families: signaling and cellular processes
04040 Ion channels [BR:
sfon04040
]
129821306
Ion channels [BR:
sfon04040
]
Voltage-gated cation channels
Sodium channel, voltage-gated (Nav)
129821306
BRITE hierarchy
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Gene cluster
GFIT
Motif
Pfam:
Ion_trans
Na_trans_cytopl
Na_trans_assoc
IQ_SCN5A_C
PKD_channel
GPHH
ATP-synt_B
IQ
New_glue
Motif
Other DBs
NCBI-GeneID:
129821306
NCBI-ProteinID:
XP_055734793
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Position
23:complement(39293486..39356136)
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AA seq
2006 aa
AA seq
DB search
MMAQLLVPPGPDSFRPFCRESLDAIERRIADENAKKYKAKPNNDDDDGPKPSSDLEAGKS
LPLIYGDIPKGLVSTPLEDLDTFYSNQKTFIVLNRGKAIFRFNATPALYVLNPFNPLRRI
SIKVLVHSLFSMVIMLTILTNCAFMTLSQPPEWTKNVEYTFTGIYTFESLIKILARGFCV
GKFTFLRDPWNWLDFCVIVMAYVTEFVDLGNVSALRTFRVLRALKTISVIPGLKTIVGAL
IQSVKKLSDVLILTVFCLSVFALVGLQLFMGNLRNKCLRIPLNSTNVSDDSFDFNGTDLN
KTSSFNWTYYMNDPKNHYYLPGKKDALLCGNDSGAGLCPEGFWCIKAGRNPDYGYTSFDT
FSWAFLSLFRLMTQDYWENLYQQTLRAAGKPYMIFFVLVIFLGSFYLINLILAVVAMAYD
EQNQATIEEAQQKEDEFQKLKRQQEDAQAAAWVTAAESGEFSERGELTDTSSEASKLSSK
SAKERRNRRKKQKQREEEERGDNDKFHRSESEGSMQKSRFRFSIDASNLLNYDMRCSTPH
QSFLSIRGPLFSSRRNSQASLFSFRDRAQDMGSENDFADDENSTFEDNDSRRGSLFVPRR
SDRRSSNLSQNSMPSHVLLPANGKKHSSVDCNGVVSLVGGASLPTLPEGLLLPEVTVDKA
STDDNGNTTEPEYRKARCESYQASMNFLEDPGARQRAFSVDSVITNTMEELEESRQECPP
CWYKFSNTFLIWDCCPAWLRIKKTVKMIVMDPFVDLTITICIVLNTVFMAMEHHSMSGNF
KRMLSVGNLVFTGIFTAEMCFKIIALDPYCYFKEGWNIFDGIIVSLSLMEIGLANVSGMS
VLRSFRLLRVFKLAKSWPTLNMLIKIIGNSVGALGNLTLVLAIIVFIFAVVGMQLFGKNY
RDCVCKISTDCTLPRWHMHDFFHSFLIVFRVLCGEWIETMWDCMEVAGQSMCLIVFMMVM
VIGNLVVLNLFLALLLSSFSADNLAATDDDSEMNNLTVAIGRIHQGLAFVKALVCHSFHS
ICLRKKKGSLNEDKPLDDLHRTNYNSNHTTVEIMKDPEYVKDDNGTTGGVGMGMGSNAAG
KYIVNDNTDYMQFIHNPSLTVTVPIAVGESDFENLNTEDFSSDSSDIEGSKEQLAKDRPL
SSSEGSTVDIRPPGEREGSVDMEPEESMEAEGCFTDGCVRRFQCCQVNVEEGKWKMWWTL
RKTCFRIVEHNWFESFIIFMILLSSGALAFEDIYIEQRKTIKTVLEFADKVFTYIFILEM
LLKWVAYGFAKYFTNAWCWLDFLIVDVSLVSLVANALGYAELSAIKSLRTLRALRPLRAL
SRFEGMRVVINALLGAIPSIFNVLLVCLIFWLIFSIMGVNLFAGKYYHCINMTTRERFKV
RDVANKTECLALKGTHWKNVKINFDNVGAGYLALLQVATFKGWMDIMYAAVDSRNLDDQP
DYEVNLYMYLYFVVFIIFGSFFTLNLFIGVIIDNFNQQKKKFGGQDIFMTEEQKKYYNAM
KKLGSKKPQKPIPRPVNKFQGFVFDFITKQAFDIVIMILICLNMVTMMVETDDQTDDIRK
ILYNINLVFIVMFTGECILKMISLRQYYFTIGWNVFDFIVVILSIIGMFLSELIEKYLVS
PTLFRVIRLARIGRILRLIKSAKGIRTLLFALMMSLPALFNIGLLLFLVMFIYAIFGMSN
FAYVKKESGIDDMFNFETFGNSMICLFQITTSGGWDGLLAPILNKGEPDCNSQKEHPGST
YKGGDCGNPPVAIIFFVSYIIICFLVVVNMYIAVILENFSVATEESAEPLSEDDFEMFYE
VWEKFDARATQFMEYDKLSDFADALDPPLRISKPNKIQLISMDLPMVNGERIHCLDILFA
FTKRVLGEGEGLDILRGQMEERFMASNPSKVSYEPITTTLRRKLEDMSALVIQRAFRRYL
LMRIVKRASAMYKEKIQSGGTLLDKEVLVIDTFNEISTSDRTDMTPSTASPPSYDSVTKP
DKNKYKKDKRKKEVKEKKKYMDVGKI
NT seq
6021 nt
NT seq
+upstream
nt +downstream
nt
atgatggcacagctgcttgtaccgccaggaccagacagcttccgcccgttttgtcgtgag
tccctcgatgccatcgagaggcggatcgctgacgagaacgccaagaagtacaaggcgaag
cccaacaacgatgacgacgacgggcctaagcccagcagtgacctggaggctggcaaatca
ctgccactcatatatggggacattcccaaaggattggtgtccacaccactggaggacttg
gacaccttctacagcaatcagaaaacctttatagtgttgaaccgagggaaggccatcttc
cgcttcaacgccactcctgcattgtatgtcttaaaccccttcaaccctcttagaagaata
tcaattaaggttttggtacactcattgttcagcatggtaatcatgttgacaatccttacc
aactgtgcgtttatgaccctgagtcagcccccggaatggacaaagaatgttgaatacaca
ttcactggaatctatacatttgaatctcttataaaaattctggcaaggggcttctgtgtg
gggaagtttacctttctccgagacccatggaactggttggatttctgtgttattgtcatg
gcatatgtcacagagtttgtggacctgggcaatgtctcagcactgagaacgttcagggtt
ctccgagctttgaaaactatatcggtcatcccaggcctgaagaccattgtgggagcgctg
atccagtcagtgaagaaactgtcagacgtgctgatcctcactgtattctgcctaagtgtc
tttgccctagtagggctccagctgttcatgggcaatttaagaaacaaatgtttaaggatc
cctcttaactcaaccaacgtctctgatgattcattcgactttaatgggacggaccttaac
aagaccagctcgttcaactggacttattacatgaatgatcccaaaaatcattactacctc
ccaggtaaaaaagatgctttgctttgtggaaatgacagtggtgccgggctgtgcccagag
ggattctggtgcataaaagcgggccggaacccagattatggctacaccagctttgacacg
ttcagctgggccttcctgtctctgttcagactgatgactcaggactactgggagaacctc
taccagcagaccctgagggctgctgggaagccatacatgatcttctttgtgttggtcatc
ttcctgggctccttctaccttatcaacctaatcctggctgtggttgccatggcctacgac
gagcagaaccaggccaccattgaggaggctcagcagaaggaggatgagtttcagaagctg
aagagacagcaggaggacgcacaggcggcggcatgggtgacagcggctgagagtggggag
ttcagtgagagaggggagctcactgacacctcctcagaggcctccaaactcagttccaag
agtgctaaagagagacgcaacaggcgcaagaagcaaaagcagagagaggaggaggagaga
ggggacaatgacaagtttcacaggtctgagtctgagggcagtatgcaaaagagtcgtttc
cgcttctccatagatgcctccaacctgctcaactacgacatgagatgttccacaccacac
cagtccttcctgagtatccgtggacccctgttctcatccagacgaaacagccaggcaagc
ctcttcagcttccgggaccgagcgcaagacatgggctcggagaacgactttgccgacgac
gagaacagtactttcgaggacaacgacagtcgccggggatctctgtttgtcccccggcgg
agcgaccggcgctccagcaacctcagccagaacagcatgccgtcacatgtcctgttgccg
gccaatgggaagaagcacagctccgtggactgcaatggggtggtgtccctggtgggcggg
gcttcacttcccacattacctgagggactccttctgccagaagtgacagtagataaagcc
tctaccgatgacaacggcaacactacggagccagagtacagaaaggcccgatgtgaatcg
taccaggcctctatgaacttcctggaggacccaggggccaggcagagggccttcagtgta
gatagtgttataactaatactatggaagaacttgaagagtcgagacaggagtgccctcct
tgctggtacaagttctccaacaccttcctcatctgggactgttgtccggcatggctgagg
atcaagaagacagtcaagatgatcgtgatggacccgtttgtagacctgactattaccata
tgtattgttctgaacacagtgttcatggctatggagcaccactcaatgtctgggaatttc
aaaagaatgctttctgtgggaaacctggtgttcacaggtatcttcacagctgagatgtgt
ttcaagattattgctttggatccgtactgttattttaaggaaggctggaatatatttgat
ggtatcattgtcagtttgagcttgatggagattggcttggccaacgtgtctggaatgtct
gtcctcagatcattccgattgctgagagtattcaaactggccaagtcttggcccacactg
aacatgctgatcaagatcattggtaactcagtgggggctctgggtaacctcaccctggtc
ctggccatcatcgtcttcatcttcgccgtggtgggcatgcagctgtttgggaagaactac
agagactgtgtgtgtaagatctctacagactgcacactgccccgctggcacatgcatgac
ttcttccactccttcctgattgtgttccgggtgctgtgtggggagtggatcgagaccatg
tgggactgtatggaggtggctggccagagcatgtgtctcatcgtcttcatgatggtcatg
gtcatcgggaacctggtggtcctgaatctgttcctggccctgctgctgagctcgttcagt
gctgataacctggcggccacggatgatgacagcgagatgaacaatctgacggtggccata
ggccgcatccaccagggcctcgcctttgtcaaggccttggtgtgccactccttccacagc
atctgtctgaggaaaaagaaggggagcctgaatgaggacaagcccctggatgacctccac
agaaccaactacaactccaaccacaccactgtggagatcatgaaagaccctgaatacgtg
aaggatgacaatggcaccaccggtggggtaggcatgggaatgggtagcaatgcagcaggg
aagtacatagtcaacgacaacactgactacatgcagttcatccacaaccccagtctgacc
gtcacggtgcccatcgctgtgggggagtcggactttgaaaacctcaacactgaggacttc
agcagcgattcctcggacatagagggaagcaaagagcagctagctaaagaccgtccgctg
agctcatcagagggcagtacagtggacatcaggcccccaggagagagagagggctcggtg
gacatggagcctgaggagtccatggaagctgaaggatgcttcactgatggctgtgtccgt
agattccaatgctgccaagtgaacgttgaggagggcaagtggaagatgtggtggacattg
aggaagacctgcttcagaatagtggagcacaactggtttgagagctttatcatcttcatg
atcctgctcagcagtggagcactggcatttgaggacatctacatcgaacagaggaagacc
attaaaacggtgttggagtttgcggacaaagtcttcacctacatcttcatcctggagatg
ttgctgaaatgggtggcctatggattcgccaaatacttcaccaacgcctggtgctggttg
gactttcttattgttgacgtctctttggtcagccttgtggccaacgccctgggctacgct
gagctgagtgccatcaagtccctgaggacgctgcgagcgctgaggcccctgagagcgctg
tcccgcttcgagggcatgagggtggtcatcaacgctctgcttggagccatcccctccatc
ttcaatgtgctgctggtgtgcctcatcttctggctcatcttcagcatcatgggtgtcaac
ctgtttgcagggaaatactaccattgtatcaacatgaccacgagggagcgcttcaaagtc
agagacgtggctaacaagacagaatgtttggctttgaaaggtacccactggaagaatgtg
aagatcaactttgataacgtgggagcaggctatctggcactgttacaagtggctacattc
aaaggctggatggacatcatgtatgcagctgtggactctcgcaatttggatgatcaaccc
gactacgaagtgaatctgtacatgtatctgtactttgtggtattcatcatatttggatcc
ttcttcacactcaacctcttcattggtgtcattatagacaacttcaatcagcaaaagaaa
aagtttggaggtcaagacatcttcatgacagaggaacagaagaaatactacaatgctatg
aagaagcttggctcaaagaaaccccaaaagcctatccctaggccagtgaacaagtttcaa
ggatttgtttttgatttcatcacaaagcaagccttcgacattgtcatcatgattctcata
tgccttaatatggtcaccatgatggtggagacggatgaccagacagacgacattcgtaaa
attctctacaatatcaacctggtgtttattgtcatgttcaccggagagtgtattctgaag
atgatctcactccgacaatactactttaccattggttggaatgtatttgactttatcgtt
gttatcctgtcgataattggtatgtttctctcagaactgatagagaagtacttggtttca
ccaaccttattccgagtcattcgactggcccgaattggccgtatccttcgcctcatcaag
agtgccaagggaatccgtacactcttgtttgcgttgatgatgtcacttcctgcattgttc
aacattggtcttctgctcttcttagtgatgtttatctatgcaatctttggcatgtcaaac
tttgcatacgtcaagaaggagtctgggattgacgacatgttcaactttgagacgttcggc
aacagcatgatctgcctgttccagatcaccacgtcagggggctgggacggcctgctggcc
cctatcctcaacaagggagagccagactgcaacagccagaaagagcacccaggaagcacg
tacaaggggggagactgtggaaacccccctgtggccattatcttctttgtgagctacata
atcatatgtttccttgttgtggtcaacatgtacattgctgtcatcttagagaacttcagt
gtggccactgaggagagcgctgagcccctgagcgaggatgactttgagatgttctacgag
gtctgggagaagtttgatgcgcgggccacccagttcatggagtatgacaagctgtcagac
tttgctgatgcgctagaccccccgctacgcatctctaagcccaacaagatccagttgatc
tcaatggatttacccatggtgaatggggagcgcatccactgcctggacatcctgtttgcc
ttcaccaaacgtgtcctgggcgagggcgaaggcttggacatcctccggggtcaaatggag
gagcgctttatggcctccaacccctccaaggtgtcctacgaaccaatcaccaccacactg
cgccgcaagctagaggacatgtctgccctggtcatccagagagctttcagacgatatctt
ctcatgcgtattgttaagcgggcctctgccatgtataaggagaagatacaaagtggaggc
acgctccttgataaagaggttctcgtcatagacacatttaacgagatctctacttcagac
agaactgacatgacaccctccacagcttctcccccatcatatgacagtgtcacaaaacct
gataaaaacaaatataaaaaagacaagagaaagaaggaggtgaaggagaaaaaaaagtac
atggatgttgggaagatttag
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