Salvelinus fontinalis (brook trout): 129827578
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Entry
129827578 CDS
T11136
Symbol
polr1a
Name
(RefSeq) DNA-directed RNA polymerase I subunit RPA1
KO
K02999
DNA-directed RNA polymerase I subunit RPA1 [EC:
2.7.7.6
]
Organism
sfon Salvelinus fontinalis (brook trout)
Pathway
sfon03020
RNA polymerase
Brite
KEGG Orthology (KO) [BR:
sfon00001
]
09120 Genetic Information Processing
09121 Transcription
03020 RNA polymerase
129827578 (polr1a)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
sfon03021
]
129827578 (polr1a)
Enzymes [BR:
sfon01000
]
2. Transferases
2.7 Transferring phosphorus-containing groups
2.7.7 Nucleotidyltransferases
2.7.7.6 DNA-directed RNA polymerase
129827578 (polr1a)
Transcription machinery [BR:
sfon03021
]
Eukaryotic type
RNA polymerase I system
RNA polymerase I
Core subunits
129827578 (polr1a)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNA_pol_Rpb1_5
RNA_pol_Rpb1_2
RNA_pol_Rpb1_3
RNA_pol_Rpb1_1
RNA_pol_Rpb1_4
YceG
Motif
Other DBs
NCBI-GeneID:
129827578
NCBI-ProteinID:
XP_055744521
LinkDB
All DBs
Position
29:20013293..20024093
Genome browser
AA seq
1698 aa
AA seq
DB search
MHFGKEVPWRRLEGLTFGMYSAEEIRKLSVKNITNFRFLDNVGNVAPNGLYDLSLGPADS
KEVCSTCMQDFNNCPGHLGHIELPLPVYNPLLFDKLYLLIRGSCLNCHMLSCPRAAIHLL
LNQLKLLDVGALQEVYELEHVLNQFLEGNVQASGVEIQVVLEDYCAHVNKQKTGGDHSSP
IKHLCEKKNKLITLFWRVQMNSRKCPHCKSGRSQVRREHNSKLIVTLPAAMYKDGAIKGP
DEEDGMAGKRGYLTPSTARDHIAKLWDKEGFFLKCLFSGLEELESSPDGFYPDLFFLELM
VVPPCRYRPINRLGDQMFTNGQTVNMQAVMKDSGVIQKLLALLAGEKLKEKQLELEEVLE
ADPSQTDQAFLAGIPGATLTDKLYNTWIRLQSHVNIVFDSDMDKLMTEKYPGIRQILEKK
DGLFRKHMMGKRVDYAARSVICPDMYIGTNEIGVPMVFATKLTYPQPVTPWNVKELRQAV
LNGPNVHPGASMVINEDGSRTILSSTNLTQREAIAKQLLTPCTGQHMMPMKIVNRHIKNG
DVLLLNRQPTLHRPSIQAHCARILPGEKVLRLHYANCKAYNADFDGDEMNAHFPQSELGR
AEAYTLVSTDQQYLVPKDGKPLAGLIQDHMVSGTRMTIRGCFFPRDQYTELVYRGLTDKV
GRVKLLPPAILKPFPLWTGKQVVSTLLMNVIPGNHIPLNLTGKAKIPSKAWIKECPRCVP
GYKPETMCDSQVIFRQGELLVGVLDKAHYGSSAYGLVHCCYELYGGETSGKLLSCLARLF
TAYLQLYRGFTMGVEDILVKLGANRQRKQIIKESVTCGTKALQAAFNLPDTVDESEARGR
WQDAHLNPDQRDFNMVDLKFKEVANQVNNDINKVVMPLGLHCSFPENNLQLMVQSGAKGS
TVNTMQISCLLGQIELEGRRPPLMPSGKSLPCFQPYESSPRSGGFVSGRFLTGIKPPEFF
FHCMAGREGLVDTAVKTSRSGYLQRCVIKHLEGLVVQYDLTVRDSDGSVVQFLYGEDGLD
VPKTQFLQPRQFPFIQDNYEVIRKSKCLDEVLAKLDPQAATNHFKAIRKWKAKREHLSPR
EGAFLLFSQKKLKKAERQALENLANGRDTATLKLVDRWSSLGQDSRSKYLKKTSHCPEPC
LSLFRPDISFGSVSETFDSIVESYLKDIQVKQLPEGSSKNLDAQRLKHLLQLKWQRALCD
PGEAVGLLAAQSIGEPSTQMTLNTFHFAGRGEMNVTLGIPRLREILMIASSSIKTPMMSI
PVLNSKKAIKRVKTLRKKLTRVCLAEVLHKVDVLETLRVKNKQQKDRVFKIIFRFLSPER
YQEDKMLTPHQILHYMENRFFRLLLEAIKKRNTKLASINAVETRKATVRDNDQDVGDSSA
RQESGEEDGEEESRIVDDVGNEGDADASDAKRRENQEEEVDYESEEGEDLVEEKEDQAEE
NSEEVPDEVPGDLATAEPGRAGARKRSKQKSTHTQDSMRVNTVLETSSSIEDYSYDSQQG
LWCEVTLVLPVSKVHFDLTSLVVAVAQNAVVMETKGITRCLLSEVTKKDGSKALELKTEG
INMHELFNHSEILDVNRLYSNEVHAMANTYGIEVALRVIEKEIKDVFAVYGIEVDPRHLS
LVADYMCFEGVYKPLNRFAIQSNSSPLQQMTFETSYKFLKQAIMQGSHDKLVSPSACLVV
GKVVKGGTGIFDLKQPLQ
NT seq
5097 nt
NT seq
+upstream
nt +downstream
nt
atgcattttgggaaagaagtaccatggaggcggctggagggactgacatttggcatgtac
tctgccgaagaaataagaaagttgagtgtcaagaacattaccaacttcagattcctggat
aatgttggtaatgttgcccccaatggcctctatgatctgtcattgggcccagctgattcc
aaagaggtgtgctccacctgtatgcaagacttcaacaactgccctgggcaccttgggcac
atcgagctacccttacccgtatacaacccactcttatttgataaactgtacctgctgatc
cgagggtcatgtctgaactgccacatgctgtcctgccccagagcagcgatccatctcctg
ctgaaccagctgaagctgctggatgtgggagctctacaggaggtctatgagttggagcat
gtgctgaaccagttcctggaaggcaatgttcaagcttctggggttgagatccaggtggtg
ttagaggactactgtgctcatgtcaacaaacagaagacaggcggcgatcacagctcacca
atcaagcatctctgtgagaagaagaacaagcttataacactcttctggagggtccaaatg
aactccaggaaatgcccccactgcaagagtggccgctcacaagtgcgtagggagcacaac
agcaaactgattgtcaccttacctgcggctatgtataaagatggtgccatcaagggaccg
gatgaagaagatgggatggctggaaaacgtggatacttgacccctagcacggcacgggat
cacatcgccaaactgtgggataaagaaggtttcttcctgaagtgcttgttctccggactg
gaggagttggagagctcacccgatggcttttacccagaccttttcttcctggagcttatg
gtggtccctccatgcaggtatcggcccattaaccgtctgggagaccagatgttcactaac
ggccagacggttaacatgcaggcagtgatgaaggacagtggcgttatccagaagctccta
gcacttctagctggagagaagctgaaggaaaagcagttggagctggaggaggtactggaa
gccgacccgtctcagacagaccaggccttcctggcagggatccccggtgccacactcaca
gataaactctacaacacctggattcggctccagagtcacgtcaacatagtctttgacagt
gacatggacaaactgatgacggagaagtaccctggcattcgtcagatcttagagaagaag
gacggtttgttcaggaagcacatgatgggtaaacgtgtggactatgcagcacgctctgtt
atttgtcctgacatgtacattgggaccaatgagattggagtacccatggtgtttgccacc
aagctgacttacccccaacctgtgacgccttggaatgttaaggaactgaggcaggcagtt
ctgaatggtcccaatgttcaccctggggcctccatggtcattaacgaggacggctcccgc
accatcctgagcagtactaaccttacccagagagaggccatcgccaagcagctcctcaca
ccctgcaccgggcagcacatgatgcccatgaagatagtgaatcgtcacatcaagaatggc
gacgtcctgctcctcaaccggcagccaacactgcatcggccgtccatccaggctcactgc
gcccgcatcctgccaggggagaaagtgttaaggcttcactacgctaactgtaaggcctac
aacgctgactttgatggggatgagatgaatgcccatttccctcagagtgaactgggcagg
gctgaggcctacacactcgtcagcactgaccagcagtaccttgtgcccaaggatgggaag
cctctggcgggtctgatccaggatcacatggtgtcaggcactaggatgaccatccgcggc
tgcttcttcccccgtgaccagtacactgagctggtctaccgaggtctgaccgacaaggtc
ggcagagtcaagctgctgccgcccgccatactcaaaccattccctctctggactgggaaa
caggtggtgtctacactactgatgaacgtcattccaggaaaccacatccctctgaacctg
acagggaaggccaagatccccagtaaggcctggatcaaggagtgtccacgctgtgttcct
ggctacaagcctgaaaccatgtgtgactcccaggtgatcttccgtcagggagagttgctg
gtgggggtgttggacaaggcccactatggcagctcagcatacggcctggtccactgctgc
tacgagctgtatggaggagagaccagtggtaaactcctcagctgcctggctcgcctcttc
actgcctacctccagctgtaccggggcttcactatgggtgtggaggatatcttggtgaaa
ctaggagccaacagacagagaaagcagatcataaaagagtctgtcacgtgtgggactaag
gccctgcaggcagcctttaacctgcctgacaccgtggatgagagtgaggctaggggccgc
tggcaggacgcccacctcaacccagaccagagagacttcaatatggtggacctcaagttt
aaggaggtggccaatcaggtcaacaacgacatcaacaaggtggtcatgcccctgggtctc
cactgcagcttccctgagaacaacctccagctgatggtgcagtctggggctaaaggctcc
actgtcaataccatgcagatctcatgtttgctgggtcagattgagctagagggccgacgt
cctcccctgatgccttctgggaaatctctgccatgcttccagccgtacgaaagttcgccc
cgctctggaggttttgtgtctggcaggttcctgacaggaatcaagcccccggagtttttc
ttccattgcatggctggccgggagggtctggtagatacagctgttaagaccagtcgatca
gggtaccttcagagatgtgtgatcaaacacctggagggcctggtggttcagtatgacctg
actgtgagggacagtgacggaagtgtggtccagtttctttatggagaggatggcctggac
gtccccaagacacagttcctccagccaaggcagtttcccttcatacaggacaactatgag
gtcatcagaaagtccaagtgcttggatgaggtcctggccaaactggaccctcaggctgcc
accaaccatttcaaagccatcaggaagtggaaagccaagagggagcatctttctcccagg
gagggggccttcctgctcttctcccagaagaaactgaagaaggcagagcgccaggctctg
gagaacctggccaatggcagggatactgccactctgaagttggtggatagatggagttct
ctaggccaggacagcagatctaagtacctgaagaagacttcacactgtcctgagccctgc
ctgagcctgttcaggcctgacatctcatttgggtcggtgtcagagacgtttgacagcatt
gtggagtcctatctaaaggacatccaagtcaagcagttacccgagggaagctcgaagaac
cttgatgcacaaagactgaagcatctgctgcagctgaagtggcagcgagccctgtgtgac
ccaggggaggcggtgggtctgctggctgctcagagcataggagagccctccacccagatg
accctcaacaccttccactttgccggcaggggggagatgaacgttaccctcggtatccca
aggcttagagaaatattgatgattgccagttccagcatcaagactccgatgatgagtatt
cctgtgttaaacagtaaaaaagccatcaagcgggtgaagacactaaggaagaagctgact
cgcgtgtgtctagctgaggtgttgcacaaagtggatgtcctggagacactccgggtgaag
aacaaacaacagaaggaccgcgtcttcaagatcatcttccgctttctttccccagagcgc
taccaggaagacaagatgctgactccccatcagatcctccactacatggagaacagattc
ttccgcctactactggaggccattaagaagcgcaataccaagctggcctctatcaacgca
gtggaaacacgcaaggctacagtacgagataatgaccaggatgtaggggactcctcagct
agacaggagagtggagaagaggatggggaggaggagagcaggattgtggacgacgtgggg
aatgagggagacgctgacgcctcggatgcgaaaaggagagagaatcaggaggaggaagtg
gattatgagagtgaggagggagaggatctggtggaggaaaaagaggaccaggcagaggag
aactctgaagaggtgcctgatgaggtgcccggtgacctggccactgcagagcctggtcgt
gctggggcaaggaagaggtcaaagcagaaaagcacacacacacaagacagcatgagggtc
aacactgtgctggaaactagttccagcatcgaggactattcctatgacagccagcagggt
ctctggtgtgaggttacgctcgtcctgcctgtcagcaaggtgcactttgacctgacgtcg
ctggtggtggccgtggcccaaaatgcagtggtgatggagactaagggcatcaccagatgt
ctgctcagtgaggtcactaagaaagatggctccaaggcgctggagctcaaaactgagggc
atcaacatgcacgagctgtttaaccacagtgaaattcttgatgtgaatcggctgtactcc
aatgaggtccacgccatggcaaacacgtacggcattgaggtggccctgagagtcattgag
aaggaaattaaagatgtcttcgctgtctatggtattgaggtggaccccaggcatttatcc
ttggtggcagactacatgtgttttgagggtgtgtacaaacctctcaaccgcttcgccatc
cagtccaactcctctccactgcaacagatgaccttcgagacgagctacaaattcctgaag
caggccattatgcagggctcccatgataagttggtctctccctcagcttgcttagtggtg
ggtaaggttgtaaagggagggaccgggatctttgatctcaagcagccattgcaataa
DBGET
integrated database retrieval system
