Salvelinus fontinalis (brook trout): 129853120
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Entry
129853120 CDS
T11136
Symbol
skic3
Name
(RefSeq) SKI3 subunit of superkiller complex protein
KO
K12600
superkiller protein 3
Organism
sfon Salvelinus fontinalis (brook trout)
Pathway
sfon03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
sfon00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
129853120 (skic3)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
sfon03019
]
129853120 (skic3)
Messenger RNA biogenesis [BR:
sfon03019
]
Eukaryotic type
mRNA degradation factors
3'-5' decay
Ski complex
129853120 (skic3)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
TPR_1
TPR_2
TPR_16
TPR_8
TPR_19
TPR_17
TPR_11
TPR_14
TPR_12
TPR_9
TPR_CcmH_CycH
PPTA
ANAPC8
TPR_15
TPR_EMC2
ANAPC3
HAT_PRP39_N
Fis1_TPR_C
Motif
Other DBs
NCBI-GeneID:
129853120
NCBI-ProteinID:
XP_055774815
LinkDB
All DBs
Position
4:complement(13272103..13299668)
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AA seq
1568 aa
AA seq
DB search
MSNKEVKSALKNARDAIKNKEFKEALKHCKAALKLEQNNYNAWVFIGVAASELEQPDQAQ
TAYRKALELEPEQLLAWQGLANLYEKSDQSDFKAELPKVYQKLIELYESSDKTKCYEVIR
KLADIFHMEKDYLQVARVWRRLIQLKEGEGADKAELLQLWQQMTCLLSDSMEEHDNETQQ
HLIAAFEKAMVLSDNVPGEDHRKLSADYLKCLSQLSHEECKMKEACESILALYPSQTFPL
EILGAHHLKSGVCSEDAGRCFSRLLELDPDSGLGHLGLGIRALEEGKCDDSIKYLAQGLK
RMRSSLVGWCSLAQAQLKMHRYSDCATSCSQGLKLGGPGEEALGQKLLRLRLEALVRTED
EHTADQALESLSQLSDANNDPVLVALKGRAYLQKGQIDQVLQVSTELLNSHPDLAEGLAL
RGLAHIAQGHHQLAEQSLLQAAAQSPACGEYYFLLGRLYWDMGEESRRDRSKAHTHLLKA
AKLDPYLGSVFCYLGHYYREVARDQGRARGCYKRAFELDSNDAESGAASVDLSMKEGDMD
TALAVLQSVIQRATPGSAKWAWMRRGLYHLKVGQHPQACADLQAALRADPQDWVCWECLG
EAYLNRRSFTSALKAFAKAQLLNPSSIYSLYQTAAIKQTLGKFKEAAAEYLQIIAQEDYV
PALKGLGECLLSLARGLMEDYRDGGAIDLIQQAIQYLFRAVELRPDLSCLWKLLGDACTS
VSTVAPNRARVVVPGPLAGLQPPDQGHLLNQEHTLRVGERCYGRALKLMPESSSLWYDLG
LNYYHQACLPVCLQEMEHNTLLLLLEKALQCVKKAIMLNSSNHSYWNALGVVAMSKGLEN
YALAQHSFIKSVQVEPNNVVAWTNLGALYLKKASVELSHEAFKIAQSLEPLYVNCWIGQA
LIAEMVGSYDTMDLFRHTTELSTHTEGVKGYAYWVCATLLDKSNRDSELYRYNIVQMNAV
SAAQVALSKYTERIQTDPDAFVMLGFLNEHLQLKKQAVLAYQRAVELLQATPSVELLAFS
LGSYGRALCNTGQWEEAVYVYSSTSLEVLHDLAGLALAYCRAGLIPESISAYEKALMVAS
TEKEKAYILTSLALLQHRLGNMDSAKTLLFKCSMLKEPVPESLLCLCALGLVHGDSTLAS
AALTELLKQGRATGAAVEQRCLLTCTLLALQGNYSAVQREASRAVHSNPGNPSLWALLSR
LVPQYYPRKAKGGAVAGHVACLSSMTQGKRALLYSGVNQLACGRHSGEDRSRNALKTMQR
AVLLCPDDPAVWAGLMAACHTENTACSLSGSTPGRRGLEQVLMAVVSEKVRNVEEVEQPL
AQALEGWVLQQAVTGLTSGGQLEQAEALCSQVLSVSPEHPAVVLLLRQVQCEHLLLSSAG
TALPASVLEQLSSAVLANHTSVAAWHWLAEVYRTQGLLVQAVMAYRQSLQLASQLDLHSG
KMACLLRLALLALSPCMAKVPGDEWKELVLEATTEALKLGPSPVALLVQALLHFATKMAA
RETRRLLERLVYFPSQGYPETVACVARWYLLRHLHAKDDLELMDTLVDDAKASGDGRLLE
FHTRLTSC
NT seq
4707 nt
NT seq
+upstream
nt +downstream
nt
atgtcaaacaaagaagttaaatcagctctaaaaaatgccagagatgccataaagaacaag
gaatttaaagaggcgctaaaacactgcaaggctgccctgaagctagagcagaacaattac
aatgcctgggtgttcattggtgtggccgcgagcgagctggagcaaccagaccaggcccag
acagcctacaggaaggctctggagctggagccagagcagcttctggcctggcagggatta
gcaaacctgtatgagaaaagtgaccaatcggattttaaagcggaactacccaaagtctac
cagaaactcattgagctttatgaaagttcagacaaaacaaaatgttatgaagtgatcaga
aaactggcagacatcttccatatggagaaggactatttacaggtggccagggtgtggcga
aggctgattcagctgaaggaaggagaaggtgctgacaaggcagagctgctgcagctatgg
caacagatgacctgccttctctcagacagcatggaggaacacgacaatgagactcagcag
cacttaattgcagcctttgagaaggccatggttctctccgacaatgtgcctggcgaggac
catcggaagctctcagctgactacctcaaatgcctttcacaactttcgcatgaagagtgt
aaaatgaaagaggcctgtgagtccatattggccctctatccctcacaaacattccctttg
gagatcctcggtgcacatcatctcaagtcaggggtctgcagtgaggacgcgggccgttgt
ttctcccgtctcttggagttggacccagacagtggcttaggccatctgggtttgggcatc
agagctctggaggagggaaaatgtgacgactccattaagtatctggcccaaggactgaag
cgaatgcgctccagcttggtgggctggtgcagccttgctcaggcccagctgaaaatgcac
cgatattccgactgcgcaacatcctgctcccaaggtctgaagctgggtgggcctggagaa
gaggcactgggacaaaagctcctgaggctgagactagaggcccttgtgaggactgaggat
gagcacactgcagaccaagccctggagagcctctcacagctttcagatgctaacaatgac
cctgtcctggtagccttaaaaggaagagcgtatttgcaaaaaggacaaattgaccaagtg
ctccaggtgtcgacggagctgctgaactctcaccctgacctggctgagggactggcgctg
aggggactggcacacattgcacagggccatcaccaactagcagaacagagcctcctgcag
gctgcagcccagagcccagcctgtggagagtactacttcctgttggggcggctgtactgg
gacatgggggaggagagtcgcagggacaggagcaaggcccacacccatctactgaaggct
gccaaactggatccgtacctgggctctgtgttctgctacctgggccattactaccgggag
gtggccagggaccagggtcgagccaggggctgctacaagagagcctttgagctggacagc
aacgacgcagagtccggggctgcctctgtggatctgagcatgaaggagggggacatggac
actgccctggctgtgctccagtcagtgatccagagagccacccctggttcagcaaagtgg
gcctggatgagacgaggcctttaccacctgaaggtgggccagcacccccaggcctgtgca
gatctgcaggctgctctgagggctgacccccaggactgggtgtgctgggaatgtctgggc
gaggcctacctgaaccgccggagcttcacgtcggccctgaaggcctttgccaaggcccag
ctgctcaacccctcctctatatacagcctctaccagactgctgccatcaaacagaccctg
ggcaagttcaaagaggctgctgcagagtacctgcagatcatagcccaggaggactatgtg
cctgcactcaaaggccttggggagtgtctgctgtccttggccagaggcctgatggaggac
tatagagatggaggagccatagacctcatccaacaggccatccagtacctcttcagggct
gtagagctgcgtccagacctgtcctgtctgtggaagttactgggagacgcctgcacctca
gtcagcactgtggcccccaacagggcccgcgttgtggtgccaggacccctggccgggtta
caacccccagaccagggccaccttctcaaccaagaacacaccctccgagtgggggagaga
tgctatgggcgtgctctgaagctgatgcctgagagctccagcctgtggtatgacctgggt
ctcaactactaccaccaggcctgtctgcctgtctgccttcaggagatggagcacaacacc
ctgctactgctgctggagaaggctctgcagtgtgtgaaaaaggccatcatgttgaacagt
agtaaccatagctactggaatgccctgggagtggtcgccatgagcaaaggacttgagaac
tatgcccttgcccaacacagcttcattaagtcagtgcaagtggaacccaataatgttgtt
gcttggacaaacctgggtgctttgtatctgaagaaagccagtgttgagctctcccatgaa
gcctttaagatcgcccagtctttggaaccactgtatgtcaactgctggattggacaggcc
cttattgcagagatggtgggcagttatgataccatggatctgttcagacacaccacagag
ctcagtacacacacggagggggtaaagggctatgcttactgggtttgtgccactctgctg
gataagagcaacagggactctgagctctatcgctacaacatcgtccagatgaacgcggtg
tctgccgctcaggtggctttgagcaagtacacagagcggatccagacagaccctgatgcc
ttcgtcatgctgggtttcctcaacgagcacctgcagctgaagaaacaggcagtgctggct
taccagagagctgtggagttgctgcaggcgacgccttccgtggagttactggccttctcc
ctgggaagctatggccgggccctctgcaacacaggccaatgggaggaggcggtgtatgtt
tactcttccacatctctagaggtgctccacgacttggctggcctggcgctggcctactgc
agagcaggactcatcccagagagcatcagtgcctatgagaaggcgctgatggtggcctct
actgagaaagagaaggcctacattctgacttctctggctctgctgcagcacagactgggg
aacatggactctgctaaaacactgctcttcaaatgctccatgctgaaggaacctgtgcca
gagtctctgctgtgcctgtgtgctctggggctggtccatggggacagcaccctggccagc
gcggccctcactgagctgctgaagcagggcagggccacaggggctgccgtggagcaacgc
tgcctgctcacctgcaccctgctggccctgcagggcaactacagcgctgtgcagcgagag
gcctccagggccgtccacagtaaccctggcaacccttccctgtgggccctgctttccaga
ctggtgccacagtattaccccaggaaggccaagggaggtgcagtggcaggccacgtggcg
tgtctctccagcatgacccaaggaaagagggcactgctgtacagtggagtgaaccagctg
gcatgtggcaggcactctggagaagatcgcagcaggaacgctctgaagaccatgcagagg
gctgtgctgctctgccccgatgacccggcggtgtgggcggggctaatggctgcttgtcac
acagagaacacagcctgctccctctctggctccacccctggcagacgaggcttggagcag
gtgctcatggccgtggtgtcagagaaagtgcggaatgtggaggaggtggaacagcctctg
gcccaggctctggagggttgggtgctgcagcaggctgtgacaggactgacaagtggaggc
cagctagagcaggctgaggccctctgctctcaggtcctgagtgtgtctcctgagcacccc
gctgtagtcctgctgttgaggcaggtgcagtgtgaacacctcctcctgtccagtgccggt
actgccctgccagcttccgtcctggagcagctcagcagtgccgtcttagccaatcacacc
tcagtggccgcctggcactggctggcggaggtgtatcgtacccagggtctgctggtacag
gcagtaatggcctacagacaaagcctgcagctggcctcccagcttgaccttcacagtggg
aaaatggcatgtcttctgcgcctagccctgctggccctcagcccctgcatggcgaaggtc
cctggtgatgaatggaaggagctggttctggaggcgaccaccgaggctctgaagctgggc
ccctcccctgtagccctccttgtccaggccctgctacacttcgccaccaagatggccgcc
agggagacgaggcgtctgttggagaggctggtgtacttcccctcccaaggttacccagag
acggtggcgtgtgtggctcgctggtacctcctacgccacctgcatgccaaagatgacctg
gagctgatggacaccctggtggatgacgccaaagccagtggagacggcagactgctagag
ttccacacacggctcacctcttgctga
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integrated database retrieval system
