Salvelinus fontinalis (brook trout): 129855413
Help
Entry
129855413 CDS
T11136
Name
(RefSeq) nucleoprotein TPR-like isoform X1
KO
K09291
nucleoprotein TPR
Organism
sfon Salvelinus fontinalis (brook trout)
Pathway
sfon03013
Nucleocytoplasmic transport
Brite
KEGG Orthology (KO) [BR:
sfon00001
]
09120 Genetic Information Processing
09122 Translation
03013 Nucleocytoplasmic transport
129855413
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
sfon03019
]
129855413
Messenger RNA biogenesis [BR:
sfon03019
]
Eukaryotic type
mRNA surveillance and transport factors
Transport factors
Nuclear pore complex
129855413
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
TPR_MLP1_2
Motif
Other DBs
NCBI-GeneID:
129855413
NCBI-ProteinID:
XP_055779028
LinkDB
All DBs
Position
5:complement(26450468..26497927)
Genome browser
AA seq
2354 aa
AA seq
DB search
MSAVLLQALERAEITKLPKAVQNKLEKLLSDLQYEIDFLKAHQEQFRVDSEQQFFEKVQR
LEQSQEQFVTQTEQHYKLREEFTKINEELKSVRENNKKCEINQDKFTSEQAQFSKAKDEL
ESEKRELVHTLERRSQEVDYLSEDLQRLNDKVSEVNTTKMGLQLKLDELESSEVNIKYRE
KRMEQEKELLQGQTAWLNGELKAKSEELLALSRQKGNEILELKCSLENKEDELNRVQDQV
TTLKTSSESLQKQTEDMISKLKEAKEQHASMEEKFRNELNANIKLSNLYKGAAADSESKS
EELSGAVEELHKLLKDAVEANKALEVKLQEMDACRIKEVAELKESISSLEKELDNANELL
SDTKLRGAASVLSEETITTMSPTAAAVAKIVKPGMKLTELYTAYVESQEVLELQRVENKR
VNKYLDDIVQEVEAKGPILKRQRDEHERMQKSVASLSSKLEQAVKEVQRLQKVTDEANKQ
SSVLERDNHRSEVQLADMAQQIRVLLIELEEARGNHVVPDEEVSSADISSTSEVITQHLV
TFRGVEELQQQNQRLLVALRELSDAQEREETETTGTKHSELERSLEKAQAELEALREQRS
HQMQLAESIVRQRDMYRVLLAQATGVSFPQQGAATEEFSLTSTPHRSPAATPTTATPTGI
ITMATESTEAVEAKAALRQLQEVFSSYKRERSESDKALAEQTEKLQEQVSDQRSQNAKIS
TQLEFTSKRYEMLQDNVEGYRKDIASLKEKGQKMAAVAQKNEQTVNTMTEDLRVAQEKLN
MAEGRAESLRKERDMLKLVESRLTQEKEAIQTQQRGQNMLLANLKTIQATLERSETDTRQ
RLSAQIEKQEREIGQLQKRLGHDVEQRHLLGRNQDLQLMDAKRQLETQTGLLQKTRDQLS
AAQLEMSSLRLQQVSEEGGRPSLGSQSSPSIPMGLKGLHGSKGDSEDLGGRLRQAETQAE
ELAEQLRTATSSKEQYRAMAQSLEESMDKEKQVMEQARSSMEERVKEAQEQHRQLERKLL
EAEKEKQGLQEEKRKALASVEQQVAELRRSLSSVQADHQEALQRAAVAAAQEQQAILDSQ
EQATLASEAQDKYEREMMLHAADVEALQAAKAQALQAATLRQQLEERAQRASAQLLEARV
SWEEQERILKEEMSKVASRSEELQRQNSLLHEQIQTMSSKIAATLQRQVNECPLNISLTE
QGKSQDQVLEILRFVRREKEIAESRFEVAQGESLRHRLRVEHLERELRELQESFSAEREM
MQVTAKTLAQHDELMKKTETMSVLMETNKMLREEKERMEQELQQTQAKVRKLELDVMPMQ
ESNAELSEKSGMLQAEKRILEEDIKRWKARTQQLVSQQKDPEEYKRLHFEKEAHLKRIQQ
LTEETGRLKAEVTRSVGSVTSLQSQVQMLREGLGKVSSERDALRRDVEAKNLDIQDKFRT
ITQVRKIGRRYKTQYDELKVEHDKMVSEAASTPAQEQEVQQASAQEVQVLRDSLGQSETR
TRDLEGQLDNLNKVVAEREAEVRGAQEQASGLQTELTRLRQELQEKASQEDTLRQQMSEK
EEKTRKALVGAKQKINQLIGSKDQLQKENEELKQQREELEVRVSALKSQYEGRLSRQERE
LRDLREQQERHGEQRDEPPEQGLSKAQEQQRTTEQRGPLKTTPAADRGSASTSEPPTANI
KPTPLGAQGQSKPPVNPGNKSTPRASIRPMITPATVPTPTPTATVMPTTQVENQEAMQSS
EGPLEHVTVYGSASGSVRSTSPSVQNTNPVLAVQQNQTTAFVQPTQQQSLPHTEPANQEQ
PLAPVVIEAAPSSQVERPSTSTAVFGTVSATPGTSSKRPREEEQDTSTVTDTDTPQEDPS
EPPIPKKLRIIQRVDPEEPEAQEEVLAESSTEGLVPGESHEAPESSQQVVEEYPVLDEAD
EGTASQSVPVELLLSQPTEVTLSYDSPEESPQHDVIVIVTDSESEDEQEDDEEEEPDYDE
EEEEEDEDEEDGGMGEEGEESNEGSGDGNEAYEDDYTEGADATDPGTETEESLGASDSTQ
RPYDSQTHSFEGSSSMEAFSSEPTSSAPRMPRSPRRAPHPLPPRLNITQELGPPAQVQPS
MRRQSVGRVPQLTPGMASSGQHYFDDDDRMVPSTPTLVVPHRSDGFAEAIHSPQVSGVPR
FRFGTPEDLISQTSHSDLGQLASQGGLGMFDSPLFLPGHEDESGGRSVPTTPLQVAAPVS
IFTEVPSSDCPEHSSLSVPMVTSSTPGQAVAGGPPPGDESDVLMEPEGDRVEVSLEPVAS
QAGEMEEPAQPSDDASLPSTSQEPSSSSADTSSTQPKPSRPGPSRQLQRWTENHMRRGML
PSRGVTGTGRRFAR
NT seq
7065 nt
NT seq
+upstream
nt +downstream
nt
atgtctgcagtgctactacaagctctggagcgcgcggagataacgaaactcccgaaagct
gttcaaaataaactggaaaagctcctctctgatctgcaatatgaaatagatttcctcaag
gcacaccaggagcaatttagagtcgatagtgaacaacagttctttgagaaagtgcagcgt
cttgagcagagtcaggaacagtttgtgacccagactgaacagcactacaaactccgagag
gagttcaccaagatcaatgaagaactcaagagtgtgcgggaaaataataaaaagtgtgaa
atcaaccaagacaagtttacatctgaacaggcccagttctcaaaagccaaagatgaactg
gagtcagagaagagggagcttgtgcatacactggagaggagatctcaggaagtggactat
ctgagtgaggacttgcagcgcctcaatgacaaagtgtcagaagtcaataccacaaagatg
gggctgcagctcaagctggacgagctcgaatcctcagaggtcaacatcaagtaccgtgag
aagcgtatggagcaggagaaggagctgttgcagggccagacggcctggctgaacggagag
ctcaaggctaagagtgaggagctgctggcgctgtcacgtcagaagggcaacgagatcctg
gagctcaagtgcagccttgagaacaaagaggatgagttgaacagagtccaggaccaagtg
acaactttaaagacttcaagtgaaagccttcagaagcagactgaagacatgatcagcaaa
ctgaaagaggctaaggagcagcacgctagcatggaggagaagtttaggaatgagctgaat
gccaacataaagctctccaacttgtacaagggagctgctgcagactctgagtccaagagt
gaggagttgagtggggctgtagaggagctgcacaagctgctgaaggatgctgtagaagcg
aacaaggccctggaggtgaaactgcaggagatggatgcctgtcggatcaaggaggttgct
gagctgaaggagagtatctccagtctggagaaagaactggacaacgccaacgaactgctg
tccgacaccaagctcagaggtgcagcctcagtgttgtcagaggaaacgattaccaccatg
tccccaactgcagccgccgtggccaagattgtcaaacctggcatgaagctgactgagttg
tatacggcgtatgtggagtcccaggaggtgctggagctgcagcgtgtggagaacaaacgg
gtgaataagtacctggatgacatagtgcaggaggtggaggccaagggtcccatcctcaaa
cgccagcgggacgaacatgagcgcatgcagaagtctgtggccagcctgtcgtccaagctg
gaacaggcagttaaggaggtgcaacgtctgcagaaggtgactgacgaggccaacaagcaa
tcttctgtcctggagagagacaaccataggtctgaggtgcagctggcagacatggcgcag
cagatccgtgtcctactaattgagctggaggaggcacgtggcaaccacgtagtgcccgac
gaggaggtgagctctgctgacatcagcagcacgtcggaggtcatcacacagcacctggtg
acgttccgtggcgtggaggagctccagcagcagaaccagcgcctcctggtggccctccga
gagctcagtgacgcacaggagagagaggagactgagaccacaggcaccaagcacagtgag
ctggagcgtagtctggagaaggcccaggcagagctggaggctctgagggagcagcggagc
caccagatgcagctggctgagtccattgtaaggcagagagacatgtaccgtgtgctgctg
gctcaggccactggagtcagcttccctcagcaaggtgcagccaccgaggaattctccctg
acctccaccccccaccgctctccagctgccacccccaccacagccacgcccactggaatc
attactatggcgacagagtcaaccgaggcggtggaggccaaggcagccctccgacagttg
caggaggtgttctcctcctataagagggagaggtctgagagtgacaaggccctggcggaa
cagactgagaagctacaggagcaggtctctgaccagagatcacagaatgccaagatatcc
acccaactggagtttacctccaagaggtatgagatgctgcaggataatgtggagggctac
aggaaggatattgcctctttgaaggagaagggacagaagatggctgctgttgcccagaag
aatgagcaaactgttaacaccatgacagaggacctgagggttgcacaggagaaactcaac
atggcagagggtcgtgctgagagcctccggaaggagagggatatgctgaagctagtggag
tccagactgacccaggagaaagaggccatccagacccaacaacgaggacagaacatgctg
ctcgccaatctcaagaccatacaggccacattggagcgctcagagacggacaccaggcag
cgcctgagcgcccagatagagaagcaggaaagagagatcggccagctgcagaagagactg
gggcacgatgtggagcaacgccacctgctgggcagaaaccaagatttgcagctgatggat
gccaaaaggcagctggagacccagacaggcctgctccagaagaccagggatcagctgagt
gctgcccagctggagatgagctctctcaggctgcagcaggtcagtgaagaaggcggtcgt
ccgtccctgggctcccaaagctccccgtccattcccatgggcctcaaaggactccatggt
tcaaaaggggactctgaggatctgggaggccgcctgaggcaggccgagacgcaggcagag
gagctggcagagcagttgaggacagccacctccagcaaagagcagtacagagccatggcc
cagagcctagaggagtccatggataaggagaagcaggtgatggagcaggctcggtcctcc
atggaggagcgtgtaaaggaggctcaggagcagcaccgtcaactggagaggaagctcctg
gaagcagagaaggagaagcagggcctgcaggaggagaagaggaaagccctggcctccgta
gagcagcaggtggctgagctgaggaggagtctgagcagtgtgcaggcggaccaccaggag
gcgctacagagggcggcggtggcagcagcccaggaacagcaggccatactggacagccag
gagcaggcaacgctggcgtcggaggctcaggataagtatgagcgtgagatgatgcttcac
gctgcagacgtggaggccctccaggcagcgaaggcccaggctctgcaggcagccacgctc
agacaacagctggaggagagggcccagagagcctctgctcagctgctggaggccagagtc
tcctgggaggaacaggagaggatcctcaaggaggagatgtctaaggtggcgtctcgctct
gaggagctgcagaggcaaaacagcctcctccatgaacagattcagaccatgagcagcaag
atagccgccaccttgcagcgccaggtcaacgagtgccctctgaacatctccctcactgag
cagggaaagtctcaggaccaggtcctcgagatactcaggtttgtgcgtcgggagaaggag
atagcggagtcacggttcgaggtggcccagggagaaagtcttcgccacaggctgagagtg
gagcacctggagagagagctgagagaactgcaggagagctttagtgctgagcgggaaatg
atgcaggtgacagctaagaccctggctcagcacgatgagctgatgaagaagactgagacc
atgagtgtcctgatggagacaaacaagatgctgagggaggagaaggagaggatggagcag
gagctgcagcagacacaggctaaagtgcgtaagctggagttagacgtaatgcccatgcag
gagtccaacgctgaactgagtgagaagagcggcatgctgcaggcagagaagaggattctg
gaagaggacatcaaacgctggaaggccagaacacagcaactggtgagccagcagaaggac
ccggaggagtacaagcgtctccactttgagaaagaggctcacctcaaacgcatccagcaa
ctcactgaggagacaggcaggctcaaggctgaggtgaccaggagtgtcgggtcggtgaca
tccctgcagagccaggtgcagatgctgcgtgaaggcctggggaaggtgagctctgagagg
gatgcgctgaggagggacgtagaggccaagaacctggacatccaggataagttccgcacc
atcactcaggtcaggaagatcggccgccgctacaagacccagtatgatgagctcaaggtg
gagcacgacaagatggtgtcagaggcagcatccacaccagcccaggagcaggaggtccag
caggcctcagcccaggaggtccaggtactgagagactccctgggacagtctgagacccgg
actagagacctagagggacagctggataacctcaacaaggtggtggctgagcgtgaggca
gaggtgcgtggggcccaagagcaggcctccgggctgcagacggagctgaccaggttgaga
caggagctgcaggagaaggcctcccaggaggacaccctcagacagcagatgtctgagaag
gaggagaagaccagaaaagccctcgtaggggccaagcagaagatcaaccagctcatcggc
tccaaggaccagctgcagaaggagaacgaggagctgaagcaacagagggaggagctggag
gtcagggtcagtgctctgaagtcacagtatgagggccgtctgagccgacaggagagggag
ctgcgggacctgagggagcagcaggagagacatggggagcagagggatgagcctcctgaa
cagggcctcagcaaggcccaggaacagcagaggaccaccgagcagagaggaccactgaag
accaccccagctgcagacaggggcagcgccagtacctcagagccccccactgccaacatc
aagcccactcctctgggggcccagggccagagcaagccccctgtcaaccctgggaacaag
tccactccccgggccagcatccggcccatgatcacccccgccactgtgcccacccccact
cctactgctaccgtcatgcccaccacacaggtggagaaccaggaagccatgcagtcttct
gagggcccgctggagcatgtgaccgtgtatggcagtgccagcggttcagtacggtcaacc
agccccagcgttcagaacaccaacccagtgctggcggtccagcagaaccagaccacagcc
tttgtccaaccaacacagcaacagagcctgccccacactgaaccagccaatcaagagcag
cccctggccccagtcgtcattgaagctgcacccagctcgcaagtggagaggccttcaacg
tccacagctgtgtttgggacagtttcagccaccccagggacatcctccaagagaccgcgt
gaggaggagcaggacacctctacggtgactgacacggacaccccccaggaggacccgtct
gaacctcccatccccaagaagctacgcatcatccagagggtagacccagaggagccagag
gcccaggaggaggtgctggctgagagcagtacagagggattggtgcctggagagagtcac
gaggccccagagagcagccagcaggtggtggaggagtacccagtactagacgaggctgat
gaggggacagcgtctcagtctgtccccgtagagctacttctgtcccagcccacagaggtt
acactctcatacgactcccccgaagaatcccctcagcacgatgtcatcgtcatagtgact
gactcggagagcgaggatgagcaggaggatgacgaggaagaggaaccggactatgatgaa
gaggaggaggaggaagatgaggatgaagaggatggcgggatgggagaagagggagaggag
agcaacgaaggtagcggagacggcaacgaggcatacgaagacgactacacagagggtgct
gacgcgacagacccaggcacggagacagaggagagtctaggagcatcggactccactcag
cgcccgtacgactcccagacacacagctttgagggcagcagcagtatggaagccttctcc
agtgaaccaaccagttctgctcccagaatgccccggtctccacggagggcaccccacccg
ctgcccccccgtctcaacatcacccaggaactgggcccccctgctcaggtacagccctcc
atgcgtcggcagtctgtaggcagagtccctcagctcacccctgggatggccagcagcgga
cagcactactttgacgatgatgacaggatggtacccagtactcctactctggtggtgcca
caccgctctgacggctttgcagaagctatccattctccccaggtgtctggtgttccccgg
ttcaggttcggcaccccagaggacttgatatcccagacctcccactctgaccttggacag
ctggcatcacaaggaggtctggggatgtttgatagtcctctgttcctgccaggtcatgag
gatgagtctgggggccgcagtgttcccaccacacccctgcaggtggctgccccagtgtcc
atattcacagaggtcccgtcctctgactgccccgaacactcctccctgtctgttcctatg
gtaaccagctctaccccgggccaggcggtggctggaggaccccctcctggggacgagagc
gatgtcttaatggagcctgagggagaccgtgtggaggtgtctctggagcctgtggcgtct
caggcaggggagatggaggaacctgcccagccctcagacgacgcaagcctgccttctacc
agccaggaaccctcctccagctctgcagacactagtagcactcagcccaaaccctctaga
ccaggacccagccgacagctccaacgctggacagagaaccatatgaggagagggatgttg
ccatcacggggtgtaactgggactgggaggagattcgccagatga
DBGET
integrated database retrieval system
