Salvelinus fontinalis (brook trout): 129857924
Help
Entry
129857924 CDS
T11136
Name
(RefSeq) platelet-derived growth factor receptor beta-like isoform X1
KO
K05089
platelet-derived growth factor receptor beta [EC:
2.7.10.1
]
Organism
sfon Salvelinus fontinalis (brook trout)
Pathway
sfon04010
MAPK signaling pathway
sfon04020
Calcium signaling pathway
sfon04510
Focal adhesion
sfon04518
Integrin signaling
sfon04540
Gap junction
sfon04810
Regulation of actin cytoskeleton
Brite
KEGG Orthology (KO) [BR:
sfon00001
]
09130 Environmental Information Processing
09132 Signal transduction
04010 MAPK signaling pathway
129857924
04020 Calcium signaling pathway
129857924
09133 Signaling molecules and interaction
04518 Integrin signaling
129857924
09140 Cellular Processes
09144 Cellular community - eukaryotes
04510 Focal adhesion
129857924
04540 Gap junction
129857924
09142 Cell motility
04810 Regulation of actin cytoskeleton
129857924
09180 Brite Hierarchies
09181 Protein families: metabolism
01001 Protein kinases [BR:
sfon01001
]
129857924
09183 Protein families: signaling and cellular processes
04090 CD molecules [BR:
sfon04090
]
129857924
Enzymes [BR:
sfon01000
]
2. Transferases
2.7 Transferring phosphorus-containing groups
2.7.10 Protein-tyrosine kinases
2.7.10.1 receptor protein-tyrosine kinase
129857924
Protein kinases [BR:
sfon01001
]
Receptor tyrosine kinases (RTK)
PDGFR family [OT]
129857924
CD molecules [BR:
sfon04090
]
Proteins
129857924
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
PK_Tyr_Ser-Thr
Ig_PDGFR_d4
Pkinase
Ig_3
I-set
Ig_2
ig
V-set
C2-set_2
PKD
RIFIN
Ig_VEGFR-1-like_5th
VEGFR-1-like_Ig-like
SOI
Haspin_kinase
Motif
Other DBs
NCBI-GeneID:
129857924
NCBI-ProteinID:
XP_055782599
LinkDB
All DBs
Position
6:complement(46690723..46741129)
Genome browser
AA seq
1096 aa
AA seq
DB search
MRSVRVCTLHLTTILTALLHFCPEFCCLEISPSNSEVVMAAGDSMTITCSGWGTVEWKFK
RDDNVPYFGVENQNTTSVLILENVMWSQTGVYVCAEAWTNKTIEVAVFVPDPDVWFIESF
HGMVTKISEEGIIPCVVTNPQINVTLYERDSDMHLKGVYIPSEGYRAPLEDRTYVCRGEL
NGEEKESQAFYVLSIAVPETIDAYINASKTVLKQGEPLTVNCTVQGVDLVSFSWDYPNRD
VDSIEPLTDVLSSQKMRSRLIVSKVTLANTGQYACHVHEGVQDQRATANVNITILEQGFV
ELRSVQDRNVSAQLHQNVELRVEIEAYPPPRVRWTKDDATVNGDNVVITRQEHETRYFST
LTLVRIRTEQKGLYTVHVANGDDTKKLTFDLEVKVPPQITDLSDHHLPGKRHAVTCVAEG
VPSPTIQWFSCDSMLKCSNRSTVWQPLVSDPETLSVQTNVSFNESRKVGQVRSQVIFHKP
QQVSVRCEASNERGLRRRDVKLVSSTFFSQVAVLAAVLALVVIVIISIIILIAVWRKKPR
YEIRWKVIESVSLDGHEYIYVDPIHLPYDLAWEMPRDSLVLGRTLGSGAFGRVVEATAYG
LGHSQSSTKVAVKMLKSTARRSETQALMSELKIMSHLGPHLNIVNLLGACTKQGPLYLVT
EYCRYGDLVDYLHKNKHTFLQYYLEKNQEDSGCRISGGSTPLSQRKGYVSFGSECDGGYM
DMSKDEPTVYVPMQELKDTITYADIQPSPYESPYQHDHYQEQDQTTMDPALFISDSTTLS
YTDLIGFSYQVAKGMEFLASKNCVHRDLAARNVLICEGKLVKICDFGLARDIMHDSNYIS
KGSTFLPLKWMAPESIFHNLYTTLSDVWSYGILLWEIFTLGGTPYPDLPMNELFYSALKR
GYRMAKPNHATDEVYEVMQKCWDEKHEKRPEFSFLVHTMGNMLTDSYKKRYCQVNDEFFK
SDHPAVVRTKPRLSSPFPTPAITPSTTPDTLQDLNPCPLTGDFRSEADREEVTTSYNDYI
IPIPDPKPQEEVFSEANTLPMESPASSLALEDDEADSISQETAEADTIPEEEDLHANQAL
IPLESSGTPEVEDSFL
NT seq
3291 nt
NT seq
+upstream
nt +downstream
nt
atgaggagtgtcagagtatgcactctccatctgacaaccattcttacagctcttttacac
ttctgtcctgagttctgttgcctggagatctcccctagcaacagtgaagttgtcatggca
gcgggtgactccatgaccattacctgttccggctgggggacggtcgaatggaagttcaag
cgggatgacaacgttccctattttggagtggagaaccagaacacgaccagtgttctcatt
ctggaaaatgtgatgtggagccaaacgggagtatatgtctgtgccgaggcttggactaac
aagactatagaggtggcagtctttgtgccagaccctgatgtgtggttcattgagagtttc
cacggcatggtgaccaagatcagcgaggaggggatcatcccgtgtgtggtcaccaacccc
cagatcaacgtcaccctctacgaaagagacagtgacatgcacctgaagggggtctacatc
ccaagtgagggctacagggcacccctggaggacaggacctatgtgtgccgaggagagctg
aacggggaggagaaagagtcccaggctttctacgtcttaagcattgctgttccggagacg
atcgacgcctacatcaatgcgtctaagacggtgctgaagcagggcgagcctctgacagtg
aactgcacggtgcagggagtggacctggtctccttctcctgggactatcccaatagagac
gtggactccattgagcctctgactgacgtcctgtcatcccagaagatgcgctcacgcctc
atagtctccaaggtgacgctggccaacacgggccagtacgcgtgtcatgtccacgagggt
gtccaggaccagagagccacagccaacgtcaacatcaccatccttgagcaaggcttcgtg
gagctgaggtccgtccaggatcgtaatgtctcggcccagctgcaccagaacgtagagctg
agggtggagattgaagcttacccccctccacgtgtccgctggaccaaagatgatgccacg
gtcaacggggacaacgtcgtaatcaccaggcaggagcatgagaccaggtacttcagcacg
ttgaccctggtgaggatcaggacagaacagaaaggcctctacaccgttcacgtcgccaac
ggagatgacaccaagaaattgacctttgatctagaggtcaaagtcccccctcagatcaca
gacctgtcggaccaccacctccctgggaagaggcatgccgtgacctgtgtggctgagggg
gtaccttcccccaccatccagtggttcagctgtgacagcatgctcaagtgcagtaaccgg
agcacagtgtggcagccgctagtgtcagaccctgagaccctgagcgtccagaccaacgtc
agcttcaacgagagccgtaaggtgggccaggtccgcagccaggtcatcttccacaagccc
cagcaggtgagcgtccgctgcgaggccagcaacgagagaggactccgcaggagggacgtc
aaactggtgtccagcactttcttctcccaggtggcagtgttggctgcggttctagccctg
gtagtcatcgtcatcatctccatcatcatcctcatcgctgtgtggaggaagaagcctcgc
tatgagatcaggtggaaggtgatcgagtcagtgagtctggacggacatgagtacatctac
gttgaccccatccatctgccctatgaccttgcctgggagatgccccgagacagcctggtg
ctaggtcgtactcttgggtccggagcattcggcagggtggtcgaagcgaccgcgtatggt
ctcggtcattcccagtccagcacgaaagtggcagtgaaaatgctcaaatccacggccagg
aggagtgagacccaggctctaatgtcagagctgaagatcatgagccacctggggcctcac
ctcaacattgtcaacctgctgggggcctgcaccaaacagggccctctctacctggtgaca
gagtactgtcgctatggagacctggtggactacttacacaagaacaagcacacgttcctg
cagtactaccttgagaagaaccaggaggactctggctgccgcatctctggagggagcacc
cctctcagccagaggaaaggctacgtgtcatttggcagtgagtgtgacggtggttacatg
gacatgagtaaggacgagcccacagtgtacgtccccatgcaggagctgaaagacaccatc
acatacgctgacatccagccttctccctatgagtctccctatcagcacgaccattaccag
gaacaagaccagaccacaatggaccctgccctgttcatcagtgactctaccaccctcagc
tatactgacctcatcggcttcagctaccaggtggccaaaggcatggagttcctcgcctcc
aagaactgtgtccatcgtgacctggccgccaggaacgtgttgatctgtgaggggaaactg
gtgaagatctgtgactttggcctagccagagacatcatgcacgattccaactacatctcc
aaaggcagcacatttctgcccctgaagtggatggccccagagagtatcttccataacttg
tacaccaccctgagtgacgtgtggtcctacggcatcttgctctgggagatattcaccctt
ggaggaaccccttaccctgaccttcctatgaatgagctgttctacagtgccttaaagaga
ggctatcgcatggccaaacctaaccacgccacagacgaagtttatgaagtcatgcagaag
tgctgggatgagaagcatgagaagaggccagagttctcctttctggtgcacaccatgggg
aacatgctcactgacagctataaaaagagatactgccaagtcaacgacgagttcttcaag
agtgaccacccggccgtggtccgaaccaaacccaggctctcctcccccttccccacccca
gccatcaccccctccaccacccctgacaccctccaggacctcaacccctgccctctaact
ggagactttagatcggaggcagatagagaggaagtgacgacctcctacaatgactacatc
attcccattccggaccccaagcctcaggaggaagtcttctccgaggccaacaccttgcca
atggaaagccctgcgagctctctggctctggaggatgacgaggctgattccatctcccag
gagacagcagaggcagacaccattccagaagaggaggatctccatgccaaccaggctctg
attccactggaatcttctggaacaccggaagtggaagacagcttcctgtag
DBGET
integrated database retrieval system
