Salvelinus fontinalis (brook trout): 129862406
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Entry
129862406 CDS
T11136
Name
(RefSeq) CCR4-NOT transcription complex subunit 1-like isoform X1
KO
K12604
CCR4-NOT transcription complex subunit 1
Organism
sfon Salvelinus fontinalis (brook trout)
Pathway
sfon03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
sfon00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
129862406
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
sfon03019
]
129862406
Messenger RNA biogenesis [BR:
sfon03019
]
Eukaryotic type
mRNA surveillance and transport factors
mRNA cycle factors
P-body specific factors
129862406
mRNA degradation factors
3'-5' decay
Ccr4-NOT complex
129862406
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Not1
CNOT1_CAF1_bind
NOT1_connector
ARM_Cnot1
CNOT1_TTP_bind
DUF3819
CNOT1_HEAT
CNOT1_1st
Motif
Other DBs
NCBI-GeneID:
129862406
NCBI-ProteinID:
XP_055790010
LinkDB
All DBs
Position
9:30257866..30305625
Genome browser
AA seq
2425 aa
AA seq
DB search
MNLDSLSLALSQISYLVDNLTKKNYRASQQEIQHIVNRHGPEADRHLLRCLFSHVDFSGD
GKSSGKDFHQTQFLIQECVSLISKPNFISTLCYTIDNPLHYQKSLKPSTHLFTQLSKVLK
LSKVQEVIFGLALLNSCNADLRGFAAQFVKQRLPDLLRSYVDADLGGSQEGGFQDIAIEV
LHLLLSHLLFGQKGASGVGQEQIEAFLKTLCRDFPQERCPVVLAPLLYPEKRDILMDRIL
PDSGELAKTMMESSLAEFMQEVGYGFCASLDECRNIILQYGVREVTASQVARVLGMMART
HSGLSDGIPLQSISAPGSGIWSDGKDKSDGSQAHTWNVEVLIDVVKEVNPNLNFKEVTYE
LDHPGFIIRDSKGLQMVVYGIQRGLGMEVFPVDLIYRPWKHAEGQLSFIQHSLMSPDVFC
FADYPCHTVAIDILKAPPEDDNREIATWKSLDLVESLLRLSEVGQYEQVKQLFSFPIKHC
PDMLVLALLQISTSWHTLRHELISTLMPIFLGNHPNSAIILHYAWHGQGQSPSIRQLIMH
SMAEWYMRGEQYDQAKLSRILDVAQDLKSLSMLLNGTPFAFVIDLAALASRREYLKLDKW
LTDKIREHGVSGEPFIQACVTFLKRRCPSIIGGQALEKDQPKSALLPPETMATMLGCLQS
CAGSVSQELSETILTMAANCSNVMNKARQPPPGVMPKGRAPSTSSLDAISPVQVSVSPLQ
MDPLTAMGSLNLGSSATSHTQSMQGFPTPLGSAFSNPQSPAKAFPALSNPSTPFGGIGSL
SSQLGNPGPLGSGIGSGIGSGLGMPAVSSDPFGTRKMSTPGLNPPTFQQSKMASDLSQVW
PEANQHFSKEIDDEANSYFQRIYNHPPHPTMSVDEVLEMLQRFKDSTIKREREVFNCMLR
NLFEEYRFFPQYPDKELHITACLFGGIIEKGLVTYMALGLALRYVLEALRKPFGSKMYYF
GIAALDRFKNRLKDYPQYCQHLASIGHFLQFPHHLQECVQYIEYGQQSRDPPVKMQGSIT
TPGSLALAQAQSQPPKAPQPGQPSTLVTTATTTTTVAKTTTITRPTPGSFKKDVPPSINT
TNIDTLLVATDQTERIVEPPENVQEKIAFIFNNLSQSNMTQKVEELKETVKEEFMPWVSQ
YLVMKRVSIEPNFHSLYSNFLDTLKNPEFVKMALNETYRNIKVLLTSDKAAANFSDRSLL
KNLGHWLGMITLAKNKPILYTDLEVKSLLLEAYVKGQQELLYVVPFVAKVLESSLRSVIF
RPQNPWTMAIMNLLAELHTEHDLKLNLKFEIEVLCKNLSLDINDLKPGTLLKDKDKLKSL
EEQLSAPKKEAKPPEEMLPVVSTGIQHFQIGMPLVGDFLPFAAAPSTPAATTTCSATGPP
TPQFSYHDINVYALAGLAPHINININIPLLHAHPQLKQCVRQSIERAVQELVHPVVDRSI
KIAMTTCEQIVRKDFALDSEESRMRVAAHHMMRNLTAGMAMITCREPLLMSIATNLKNSF
AAALRAPTPQQREMMEEAAARVAQDNCELACCFIQKTAVEKAGPEMDKRLATEFELRKHA
RQEGRRYCDPVVLTYQAERMPEQIRLKVGGVDPKQLAVYEEFARNVPGFLPSNDLSQPTG
FLAQPMKQQAWATDDVAQIYDKCMADLEQHLHAIPPALAMNPQTQALRSLLEAVALARNS
RDGIAALGLLQKAVEGLLDATSGADADLLLRYRECHLLVLKALQDGRAYGPQWCNKQITR
CLIECRDEYKYNVEAVELLIRNHLVNMQQYDLHLAQSMENGLHYMAVAFAMQLVKLLLVD
ERSVSHITEADLFHTIETLMRTSAHSRANAPEGLPQLMDVVRSNYEAMIDRAHGGPNFMM
HSGISQASEYDDPPGLREKAEYLLREWVNLYHSAAAGRDSTKAFSAFVGQMHQQGILKTD
DLITRFFRLCTEMCVEISYRAQAEQQHNPAASAAIIRAKCYHNLDAFVRLIALLVKHSGE
ATNTVTKINLLNKVLGIVVGVLIQDHDVRQTEFQQLPYHRIFIMLLLELNAPEHVLETIN
FQTLTAFCNTFHILRPTKAPGFVYAWLELISHRIFIARMLAHTPQQKGWPMYAQLLIDLF
KYLAPFLRNVELNKPMQILYKGTLRVLLVLLHDFPEFLCDYHYGFCDVIPPNCIQLRNLI
LSAFPRNMRLPDPFTPNLKVDMLSEINIAPRILTNFTGVMPSQFKKDLDSYLKTRSPVTF
LSELRSNLQVGGATLGPWKYLQHNDTSLDQVSNEPGNRYNIQLINALVLYVGTQAIAHIH
NKGSTPSMSTITHSAHMDIFQNLAVDLDTEGRYLFLNAIANQLRYPNSHTHYFSCTMLYL
FAEANTEAIQEQITRVLLERLIVNRPHPWGLLITFIELIKNPAFKFWSHDFVHCAPEIEK
LFQSVAQCCMGQKQAQQVMEGTGAS
NT seq
7278 nt
NT seq
+upstream
nt +downstream
nt
atgaatcttgactcgctctcgctggctttgtctcaaatcagctacttggtggacaattta
actaagaaaaactacagagccagccagcaggaaatacaacatattgtgaatcgtcacggc
cctgaggcagacaggcatttattacgctgtcttttctcccatgtggatttcagtggcgat
ggtaaaagcagtggcaaagatttccatcagacacagtttctgatccaggagtgtgtttca
ctgatttcaaagccaaattttatttcaacactctgctacacaatcgacaatcccttgcac
taccagaagagtttgaagccttccacccacttgtttactcagttgagtaaagttctcaag
ctaagcaaggttcaagaagttatatttggccttgctttgctgaattcgtgcaacgcagac
cttcgtggttttgccgcgcagttcgtcaaacaaaggctcccggacctcctccgctcgtac
gtggacgcagaccttggaggaagccaggaaggtggcttccaagatattgccatagaggtc
ctgcacctgctcctctcccatcttctgtttggccagaagggagccagtggggtcggacaa
gagcagattgaagcgttcctcaagacactgtgtagagatttcccgcaggagcgctgccct
gtggtgctcgcaccactgctataccctgaaaaacgggacattctgatggacaggattctg
ccagactcgggagagttagccaagaccatgatggagagttctctcgcagagttcatgcag
gaagttggctatggcttttgtgcaagtctcgatgaatgccgcaacataatcctacagtat
ggggtgcgagaggttactgccagccaggtggccagggtcctggggatgatggctcgcacc
cactctggcttgtctgatggaatccccctacagtccatctcggctccgggcagtggcatt
tggagcgatggaaaggacaaaagtgatggctctcaggcgcacacctggaatgtagaagtt
ctaattgatgtggtcaaagaagttaaccccaatctgaactttaaagaggtgacctacgag
ctcgatcaccctggcttcataatccgggacagcaagggactgcagatggtggtgtatggg
atccagaggggcctgggcatggaggtgttccctgtcgacctaatctaccggccctggaag
catgctgaaggacagctgtcattcatccagcactccctcatgagcccagatgtgttctgc
tttgctgactacccctgccacaccgtagcaatcgacatactgaaggccccacctgaggac
gataaccgagagatagccacctggaaaagcctagacctggtggaaagcctcctgcgcctc
tctgaggtgggccagtacgagcaggtaaagcagctcttcagctttcccatcaagcactgt
cccgacatgctggtgctggcgctgctgcagataagcacctcctggcacaccttgcgccac
gagctcatctccaccctcatgccaatcttcctgggcaaccaccccaactctgctatcatc
ttacactacgcctggcatggacagggccagtccccctctatccgtcagctgattatgcac
tctatggctgagtggtacatgagaggggagcagtacgaccaggccaagctgtcccgcatc
ctggatgtggcccaggacttgaagtctctatctatgctgctaaatggtactccatttgcc
ttcgttattgaccttgctgcacttgcctctcgccgtgaatacctcaaacttgacaaatgg
ctgactgacaaaatccgagagcatggggtgagtggtgagcccttcatccaggcgtgtgtt
acgttcctgaagagacgttgtccctctatcattggtggtcaggccctagaaaaggaccag
cccaaaagcgccctccttcccccggaaacgatggctaccatgctgggttgtctgcagtct
tgtgctgggagtgtctctcaagagctctccgagactatcttgaccatggctgccaactgt
agcaacgtcatgaacaaagcccgccagccgccaccaggggtcatgccaaagggacgtgct
cccagcaccagcagccttgatgcaatttcccctgtgcaagtgtcggtgtctcctctccag
atggatcccctgacagccatgggctccctcaacctgggcagctctgccacctctcacaca
cagagtatgcagggctttcccaccccgctgggctctgctttcagcaacccccagtcccca
gctaaggccttccctgcactgtccaaccccagcacaccatttggggggattggaagtctc
tcttcacagctaggtaacccaggtccgctgggatcaggcattggctctggtattggttct
ggtcttggaatgccagcggtgagcagtgatccgtttgggacgaggaagatgagcacacca
ggcctgaatccgcccacctttcagcagagtaagatggcctctgacctatctcaggtgtgg
ccagaggctaaccagcactttagtaaggagattgacgatgaggctaacagctacttccag
cgcatctacaaccaccccccacaccccaccatgtctgtggatgaggtgctggagatgctg
cagaggttcaaggactccaccatcaagcgagagcgtgaggtctttaactgtatgctgagg
aacttgtttgaggagtaccgcttcttcccccagtaccctgacaaggagctacacatcacc
gcctgcctgttcggggggatcattgagaaaggccttgtcacctacatggccctcggactg
gccctccgatatgtactcgaagccttgaggaaaccatttgggtccaaaatgtattacttt
ggaatcgctgctctagatagattcaaaaatagactgaaggactatccccaatattgtcag
cacttggcctcaattggccactttctgcagttcccccatcatttacaagagtgtgtgcag
tatatcgagtatggccaacagtcacgggaccctccggtgaagatgcagggatccatcacc
accccaggaagcctggcgttggctcaagctcagtctcagcctcccaaagccccccagcct
ggacagcccagcacactggtcaccacagctaccaccaccaccactgttgccaaaaccact
accatcacccggcctacccctggcagcttcaagaaggatgtgccaccctccatcaacacc
acaaacatcgacacacttctagtagcaacagaccaaaccgagaggattgtggaaccccca
gaaaatgttcaagagaaaattgctttcatcttcaataacctgtcacaatccaacatgaca
cagaaggttgaggagttaaaggagactgtcaaagaggagttcatgccctgggtctctcag
tatctggtcatgaagagggtcagcattgagcccaacttccacagcctgtactccaacttc
ctggacaccctgaagaacccagagtttgtcaaaatggcactgaatgaaacttacagaaac
atcaaggttctccttacctctgataaggcagctgcaaacttctctgatcgatccctactg
aagaatttgggtcactggcttggtatgatcactctggctaaaaacaagcccatcctgtac
acagatttggaggtgaaatccctcttgttggaagcgtatgtcaaggggcagcaggagcta
ctatatgtggtcccgtttgtggccaaagtcctggaatccagtttacgtagcgtgattttc
cgaccccagaatccctggacgatggccatcatgaatcttctggcagaactgcatacggag
catgatctcaagctgaacttgaagtttgagattgaggtgctgtgtaagaacttatcattg
gacatcaatgacctgaagcctggcacccttctgaaggacaaagacaagttgaagagcctg
gaggaacagctctctgcaccaaagaaagaggctaagccccctgaagaaatgctccctgtt
gttagcacaggtatccagcactttcaaattgggatgccccttgtcggagactttcttcca
tttgcagctgcgccatccactcctgccgcaaccaccacttgctcagctactgggccccct
accccacagtttagctatcatgacatcaatgtgtacgcccttgcagggctagcccctcac
atcaatatcaacatcaacatccccttgctccatgcccaccctcagctgaagcagtgtgtg
agacagtccattgagcgggccgtgcaggagctcgttcaccctgtggtggaccgttccatc
aagattgccatgactacctgcgagcagatcgtcaggaaggactttgccctggactccgag
gagtcgcgcatgcgtgtggccgcccatcacatgatgcgtaacctgaccgccggcatggcc
atgatcacctgccgggagcccctgctcatgagtatcgctaccaacctgaagaacagcttt
gccgcagccctcagggcccccaccccccagcagagagagatgatggaggaggctgctgct
agggttgcccaggacaactgtgagctggcatgctgcttcatccagaagactgcggtggag
aaggctggcccagagatggacaagagactggccacggagtttgagctgaggaagcacgcc
cgtcaggagggtcgtcgctactgcgaccctgtggtgctgacctaccaggcagagcgcatg
ccagagcagatcagactcaaggttggaggagtagaccccaaacagctggcggtgtacgag
gagtttgccaggaatgttccaggcttcctacccagcaacgacctgtctcagcccactgga
ttccttgcccagcccatgaagcaacaggcatgggccacagacgacgtggctcagatctat
gacaagtgcatggcggacctggagcagcacctccatgccatccccccagcgctggccatg
aacccccagacccaggccctgcgcagtctgctggaggcagtggccctggccaggaactcc
cgggatggcattgctgctctgggcctgctgcagaaggctgtggagggtctgctcgatgcc
accagtggtgccgatgctgacctgctcctgcggtacagagagtgtcacctgctggtgctc
aaagccctccaggacggccgtgcatacggaccacaatggtgcaacaaacagattaccagg
tgcctgattgagtgccgtgatgagtacaagtacaacgtggaggctgtggagctgctgatc
agaaaccacctggtcaacatgcagcagtacgacctgcacttggcacagtctatggagaac
ggtctgcactacatggcagtggcatttgccatgcagctggtaaagctgctgctggtggat
gagcgcagtgtgagccacatcacagaggccgacctgttccacaccatcgagactctgatg
agaaccagcgcacactccagggccaatgcacccgaggggcttcctcagctgatggatgtg
gtccgctctaactacgaggccatgatcgaccgggcccatggagggcccaactttatgatg
cactctggcatctcccaagcgtctgagtacgacgacccgccgggcctgagggagaaggca
gagtacttgctgagggaatgggtcaacctgtaccactctgcagccgccggccgggacagc
accaaggccttttctgcttttgtgggccagatgcaccagcagggcattctgaagactgat
gacctgatcacgcgtttcttccggctgtgcacagagatgtgtgtggagatcagctaccgc
gcccaggccgagcagcagcacaatcctgcagccagcgccgccatcatcagagccaagtgc
taccacaacctggacgcctttgttcgcctcatcgctttgctggtcaagcactctggagag
gccaccaacacagtcaccaagatcaacctgctcaacaaggttctaggtattgtggttgga
gtgctgatccaggaccatgatgtaagacagacagagtttcaacaattgccttaccaccgc
atcttcatcatgctgctgctcgagctcaatgcccccgagcatgtgctggagaccatcaac
ttccagacactcaccgccttctgcaacactttccacatcctgaggcctaccaaagcccct
ggctttgtctacgcttggctggagttgatctctcaccggatcttcatcgcaaggatgctg
gcacacaccccacagcagaagggttggcccatgtatgcccagctgctcattgatcttttc
aaatacctagcgcccttcctgaggaatgttgagctcaacaaacctatgcaaatcctctac
aagggtaccctgcgtgtcctgcttgtcctgctgcatgacttcccagagttcctgtgtgac
taccactacggcttctgtgacgtcatcccgcccaactgcatccagctccgcaacctgatc
ctgagtgccttcccacgcaatatgagacttccagaccccttcactcccaatctgaaggtt
gacatgctcagcgagatcaacattgctccgcgcatcctcactaacttcaccggagtgatg
ccctctcagttcaagaaggatctggattcgtacctgaagacgcgctcccctgtcaccttc
ctctctgagctccgcagcaatctgcaggtagggggcgccactctgggtccctggaagtat
ttgcagcacaacgacacatctttagaccaggtgtcaaatgagccaggcaatcgttacaac
atccagctgatcaatgcactggtgctgtatgtggggacccaggccatcgcacacatccac
aacaagggcagcactccctccatgagcaccatcactcactcagcccacatggacatcttc
cagaacctggctgtggacctggacactgaggggcgctatctcttcctgaatgcgattgct
aatcagctgcgctacccaaacagccacacccattacttcagctgcaccatgctctatctg
tttgctgaggccaacacagaggcaatccaggagcagatcaccagggttcttctggagagg
ctgattgtgaacaggcctcacccctggggactgctcatcacgttcatcgagctcatcaag
aaccctgccttcaagttctggagccacgactttgtgcactgtgccccggagatcgaaaag
ttgttccagtcagtggctcagtgctgcatggggcaaaagcaggctcagcaggtgatggag
ggcactggtgccagttag
DBGET
integrated database retrieval system
