Salvelinus fontinalis (brook trout): 129866795
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Entry
129866795 CDS
T11136
Name
(RefSeq) CCR4-NOT transcription complex subunit 1 isoform X1
KO
K12604
CCR4-NOT transcription complex subunit 1
Organism
sfon Salvelinus fontinalis (brook trout)
Pathway
sfon03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
sfon00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
129866795
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
sfon03019
]
129866795
Messenger RNA biogenesis [BR:
sfon03019
]
Eukaryotic type
mRNA surveillance and transport factors
mRNA cycle factors
P-body specific factors
129866795
mRNA degradation factors
3'-5' decay
Ccr4-NOT complex
129866795
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Not1
CNOT1_CAF1_bind
NOT1_connector
ARM_Cnot1
CNOT1_TTP_bind
DUF3819
CNOT1_HEAT
CNOT1_1st
Motif
Other DBs
NCBI-GeneID:
129866795
NCBI-ProteinID:
XP_055795658
LinkDB
All DBs
Position
12:complement(11512711..11530735)
Genome browser
AA seq
2419 aa
AA seq
DB search
MNLDSLSLALSQISYLVDNLTKKNYRASQQEIQHIVNRHGPEADRHLLRCLFSHVDFSGD
GKSSGKDFHQFLIQECVSLISKPNFISTLCYAIDNPLHYQKSLKPSAHLFTQLSKVLKLS
KVQEVIFGLALLNSCNADLRGFAAQFVKQKLPDLLRSYVDADLGVNQEGGFQDIAIEVLH
LLLSHLLFGQKGASGVGQEQIDAFLKTLCRDFPQARCPVVLAPLLYPEKRDILMDRILPD
SGELAKTMMESSLAEFMQEVGYGFCASLDECRNIILQYGVREVTASQVARVLGMMARTHS
GLSDGIPLQSISAPGSGIWSDGKDKSDGSQAHTWNVEVLIDVVKEVNPNLNFKEVTYELD
HPGFMIRDSKGLQMVVYGIQRGLGMEVFPVDLIYRPWKHAEGQLSFIQHSLMSPDVFCFA
DYPCHTVAIDILKAPPEDDNREIATWKSLDLVESLLRLSEVGQYEQVKQLFSFPIKHCPD
MLVLALLQISTSWHTLRHELISTLMPIFLGNHPNSAIILHYAWHGQGQSPSIRQLIMHSM
AEWYMRGEQYDQAKLSRILDVAQDLKSLSMLLNGTPFAFVIDLAALASRREYLKLDKWLT
DKIREHGVGGEPFIQACVTFLKRRCPSIMGGLAPEKDQPKSAQLPPETMATMLGCLQSCA
GSVSQELSETILTMVANCSNVMNKARQPPPGVMPKGRAPSTSSLDAISPVQVSVSPLQMD
PLTAMGSLNLSSSATSHTQSMQGFPTPLGSAFSNPQSPAKAFPPLSNPNPSTPFGGIGSL
SSQLGNTGPLGSGIGSGLGMPAVSSDPFGTRKMSTPGLNPTTFQQTDLSQVWPEANQHFS
KEIDDEANSYFQRIYNHPPHPTMSVDEVLEMLQRFKDSTIKREREVFNCMLRNLFEEYRF
FPQYPDKELHITACLFGGIIEKGLVTYMALGLALRYVLEALRKPFGSKMYYFGIAALDRF
KNRLKDYPQYCQHLASIGHFLQFPLTLQECVQYIEYGQQSRDPPVKMQGSITTPGSLALA
QAQAQSQPPKAPQSGQPSTLVTTATATTTVAKTTTITRPSPGSFKKDVPPSINTTNIDTL
LVATDQTERIVEPPENVQEKIAFIFNNLSQSNMTQKVEELKETVKEEFMPWVSQYLVMKR
VSIEPNFHSLYSNFLDTLKNPEFVKMVLNETYRNIKVLLTSDKAAANFSDRSLLKNLGHW
LGMITLAKNKPILYTDLEVKSLLLEAYVKGQQELLYVVPFVAKVLESSLRSVIFRPQNPW
TMAIMNVLAELHTEHDLKLNLKFEIEVLCKNLSLDINDLKPGTLLKDKDKLKSLEEQLSA
PKKEAKPPEEMIPIVSTGIQHFQTGMPLVGDFLPFAAAPSTPAPTTTCSATGPPTPQFSY
HDINVYALAGLAPHINININIPLLQAHPQLKQCVRQSIERAVQELVHPVVDRSIKIAMTT
CEQIVRKDFALDSEESRMRVAAHHMMRNLTAGMAMITCREPLLMSIATNLKNSFAAALRA
PTPQQREMMEEAAARVAQDNCELACCFIQKTAVEKAGPEMDKRLATEFELRKHARQEGRR
YCDPVVLTYQAERMPEQIRLKVGGVDPKQLAVYEEFARNVPGFLPSNDLSQPTGFLAQPM
KQQAWATDDVAQIYDKCMADLEQHLHAIPPALAMNPQTQALRSLLEAVALARNSRDGIAA
LGLLQKAVEGLLDATSGADADLLLRYRECHLLVLKALQDGRAYGPLWCNKQITRCLIECR
DEYKYNVEAVELLIRNHLVNMQQYDLHLAQSMENGLHYMAVAFAMQLVKLLLVDERSVSH
ITEADLFHTIETLMRTSAHSRANAPEGLPQLMDVVRSNYEAMIDRAHGGPNFMMHSGISQ
ASEYDDPPGLREKAEYLLREWVNLYHSAAAGRDSTKAFSAFVGQMHQQGILKTDDLITRF
FRLCTEMCVEISYRAQAEQQHNPAASAAIIRAKCYHNLDAFVRLIALLVKHSGEATNTVT
KINLLNKVLGIVVGVLIQDHDVRQTEFQQLPYHRIFIMLLLELNAPEHVLETINFQTLTA
FCNTFHILRPTKAPGFVYAWLELISHRIFIARMLAHTPQQKGWPMYAQLLIDLFKYLAPF
LRNVELNKPMQILYKGTLRVLLVLLHDFPEFLCDYHYGFCDVIPPNCIQLRNLILSAFPR
NMRLPDPFTPNLKVDMLSEINIAPRILTNFTGVMPSQFKKDLDSYLKTRSPVTFLSELRS
NLQVGGATLGPWKYLQHNDTSLEQVSNEPGNRYNIQLINALVLYVGTQAIAHIHNKGSTP
SMSTITHSAHMDIFQNLAVDLDTEGRYLFLNAIANQLRYPNSHTHYFSCTMLYLFAEANT
EAIQEQITRVLLERLIVNRPHPWGLLITFIELIKNPAFKFWSHDFVHCAPEIEKLFQSVA
QCCMGQKQAQQVMEGTGAS
NT seq
7260 nt
NT seq
+upstream
nt +downstream
nt
atgaatcttgactcgctctcgctggctttgtctcaaatcagctacctggtggacaattta
acaaagaaaaactacagagccagccagcaggaaatacagcatattgtgaatcgtcacggc
cctgaggcggacaggcatttattacgctgtctcttctcccatgtggatttcagtggtgat
ggtaaaagcagtggcaaagattttcatcagtttctgatccaggagtgtgtttcactgatt
tcaaagcctaattttatttcaacactttgctacgccatcgacaatcctttgcactaccag
aagagtttgaagccgtcggcccacttgtttactcagttgagtaaagttctcaagctaagc
aaggttcaagaagtgatatttggccttgctttgctcaattcgtgcaacgcagaccttcgt
ggttttgccgcgcagttcgtcaaacaaaagctccctgatctcctccgctcgtacgtggac
gcggaccttggcgttaaccaggaaggtggcttccaagatattgccatagaggtcctgcac
ctgctcctctcccatcttctgtttggccagaagggagccagtggcgtcggacaagagcag
attgacgctttcctcaagacactgtgcagagatttcccgcaggcgcgctgccctgtggtg
cttgcaccgctgctgtaccctgaaaaacgggacattctgatggacaggattctgccagac
tcgggagagttagccaagaccatgatggagagttctcttgcagagttcatgcaggaagtt
ggctatggcttttgtgctagtcttgatgaatgccgcaacataattctgcagtatggggtg
cgagaggttactgccagccaggtggccagggtcctggggatgatggctcgtacccactct
ggcttgtctgatggaatccccctacagtccatctctgctccgggcagtggcatttggagt
gatggaaaggacaaaagtgatggttctcaggcccacacttggaatgtagaagttctgatt
gacgtagtcaaagaagttaaccccaatctgaacttcaaagaggtgacctacgagctcgat
caccctggctttatgatccgggacagtaagggacttcagatggtggtgtatgggatccag
aggggcctgggcatggaggtgttccctgtcgacctcatctaccggccctggaagcatgct
gagggacagctgtcattcattcagcactccctcatgagcccagatgtgttctgcttcgct
gactacccctgccacaccgtagccatcgacatactgaaggcgccacccgaggacgataac
agggagatagccacctggaagagcctggacctggtggagagcctcctgcgcctctctgag
gtgggccagtacgagcaggtgaagcagctcttcagtttccccatcaagcactgtcctgac
atgctggtgctggcgctgctgcagatcagcacctcctggcacaccctgcgccacgagctc
atctccaccctcatgcccatcttcctgggcaaccatcccaactctgccatcatcttgcac
tacgcgtggcacggacagggccagtccccctctatccgtcagctgatcatgcactcgatg
gcagagtggtacatgagaggagagcagtacgaccaggccaagctgtcccgcatcctggat
gtggcccaggacttgaagtctctttcaatgctgctaaatggtactccatttgcctttgtt
attgaccttgctgcacttgcctctcgccgtgaatacctcaaacttgacaaatggctgact
gacaaaatccgagagcacggggtgggtggcgagcccttcatccaggcatgtgtaacgttc
ctgaagagacgctgtccctctattatgggtggtctggccccagagaaggaccagcccaaa
agcgcccagctccccccggaaacgatggctaccatgctgggctgtctgcagtcctgtgca
gggagtgtgtctcaagagctctctgagactatcttgaccatggttgccaactgtagcaac
gtcatgaacaaagcccgccagccaccaccgggggtcatgccaaagggacgtgctcccagc
accagcagcctagacgccatttcccctgtgcaggtatcggtgtctcctctccagatggat
cccctgacagccatgggttcgctgaacctgagcagctctgccacctctcacacacagagc
atgcagggcttccctaccccgctgggctctgccttcagcaacccccagtccccagctaag
gccttccctccactgtccaaccccaaccccagcacaccatttggggggattggaagcctc
tcttcacagctaggtaacacaggtccgctgggatcaggcattggttctggtcttggaatg
ccagcggtgagcagcgatccgtttgggacgaggaagatgagcacaccgggcctgaatccg
accacctttcagcagactgacctatctcaggtgtggcccgaggctaaccagcactttagt
aaggagattgacgatgaggctaacagttacttccagcgcatctacaatcaccccccacac
cccaccatgtctgtggatgaggtgctggagatgttgcagaggttcaaggactccaccatc
aagcgagagcgggaggtctttaactgtatgctgaggaacttgtttgaggagtaccgcttc
ttcccccagtaccctgacaaggagctgcacatcaccgcctgcctgttcggggggatcatc
gagaagggtcttgtcacctacatggcccttgggctggccctcagatatgtccttgaagcc
ttaaggaagccatttggatccaaaatgtattactttggaatcgctgctctagatagattc
aaaaataggctgaaggactatccccaatattgtcagcatttggcctcgatcggccacttt
ctgcaattcccccttactttacaagagtgtgtgcagtatatcgagtatggccaacagtca
cgggatcctccagtgaagatgcaaggatccatcaccacccctgggagcctggcgttggct
caagctcaggcccagtctcagcctcccaaagccccccagtctggacagcccagcaccctg
gtcaccacagctactgccaccaccactgtcgccaaaaccactaccatcacacgaccttcc
cctggcagcttcaagaaggatgtgccgccctccatcaacaccacaaacattgacactctg
ctagtagcaacagaccaaaccgagaggattgtggaacccccagaaaatgttcaagagaaa
attgctttcatcttcaataacctttcacaatccaacatgacacagaaggttgaggagtta
aaggaaactgtgaaagaggagtttatgccctgggtctcccagtatctggtcatgaagagg
gtcagcatcgagcccaacttccacagcctatactccaactttctagacactctgaagaac
cctgagtttgtcaaaatggtcctgaatgaaacttacagaaacatcaaggttctccttacc
tctgataaggcagctgcaaacttctctgatcgatccctactgaagaatttgggccactgg
cttggcatgatcactctggcaaaaaacaagcccatcctgtacacggatttggaggtaaaa
tccctcttgttggaagcctatgtcaaggggcagcaggagctactgtatgtggtcccgttt
gtggccaaagtcctggaatccagtttgcgtagtgtgatcttccgacctcagaatccctgg
accatggccatcatgaatgttctggcagagttgcatacggaacatgatctgaagctgaac
ttaaagtttgagattgaggtgctgtgtaagaacttatcactggacatcaatgacctgaag
cctggcaccctgctgaaagacaaagacaagttgaagagtctggaggagcagctctctgca
ccaaagaaagaggccaagccccctgaagaaatgatccctattgttagcacaggtatccag
cactttcaaactgggatgccccttgtcggagactttcttccatttgcagctgcaccatcc
actcccgccccaaccaccacttgctcagctactgggccccctaccccgcagtttagctat
catgacattaatgtgtacgcccttgcagggctagcccctcacatcaatatcaacatcaac
atccccttgcttcaagcccaccctcagctcaagcagtgtgtgagacagtccattgagcgg
gccgtgcaagagctcgtccaccccgtagtggaccgctccatcaagatcgccatgacaacc
tgcgagcagatcgtcaggaaggactttgctctggactcggaggagtcgcgcatgcgtgtg
gcagctcatcatatgatgcgcaacctgactgccggcatggccatgatcacctgccgggag
cccctgctcatgagcatcgccaccaacctgaagaacagctttgccgctgccctcagggcc
cccaccccccagcagagagagatgatggaggaggctgctgccagggtcgcccaggacaac
tgtgagctggcctgctgcttcatccagaagactgcagtggagaaggctggtccagagatg
gacaagaggctggcgacggagtttgagctgaggaagcatgcccgtcaggagggccgtcgc
tactgtgaccctgttgtgctgacctaccaggccgagcgcatgccagagcagatcagactc
aaggttggaggcgtagaccccaaacagctggcagtgtatgaggagtttgcccgtaatgtt
ccaggcttcctacccagcaacgacctgtctcagcccacaggattccttgcccaacccatg
aagcaacaggcatgggccacggatgacgtggctcagatctatgacaagtgcatggcagac
ctggagcagcacctccatgccatccctcccgcgctggccatgaaccctcagacccaggct
ttgcgcagcctgctggaagccgtggccctagccaggaactcccgggacggcatcgccgct
ctgggcctgctgcagaaggctgtggagggtctgctggatgctaccagtggtgccgatgct
gacttgcttctgcggtatagagagtgccacctgctggtgctcaaagccctccaggacggc
cgggcatacgggccactgtggtgcaacaagcagattaccaggtgcctgattgagtgccgt
gatgagtacaagtacaacgtggaggctgtggagctgctgatcagaaaccacctggtcaac
atgcagcagtatgacctgcacctggcacagtctatggagaatgggctgcactacatggca
gtggcgtttgccatgcagctggtgaagctgctgttggtggatgagcgcagtgtgagccac
attaccgaggcagacttgttccacactatcgagactctgatgcgaaccagcgcccactcc
agggccaacgcacctgaggggcttcctcagctgatggacgtggtccgttccaactacgag
gccatgatcgaccgggcccacggaggacccaactttatgatgcactctggcatctcccag
gcatccgagtacgacgacccgccgggcctgagggagaaggctgagtacctgctgagggaa
tgggtcaacctgtaccattctgcagccgccggccgggacagcaccaaggccttctctgcc
tttgtgggacagatgcaccagcagggcattctgaagaccgatgacctgatcactcgtttc
ttccggctgtgcacggagatgtgtgtggagatcagctaccgtgcgcaggccgagcagcag
cacaaccccgcggccagcgccgccatcatcagggccaagtgttaccacaacctggacgcc
tttgtgcgcctcatcgccctgctggtcaagcactccggagaggccaccaacactgtcacc
aagatcaacctactcaacaaggttctaggtattgtggttggagtgttgatccaggaccat
gatgtgagacagactgagttccagcagttgccttaccaccgcatcttcatcatgctgttg
ctcgagctcaatgcccccgagcacgtgctcgagaccatcaacttccagaccctcaccgcc
ttctgcaacactttccacatcctgaggcctaccaaagcccctggctttgtttacgcttgg
ctggagttgatctctcaccgtatcttcatcgccaggatgctggcgcacaccccacagcag
aagggttggcccatgtatgcgcaacttctcattgatctgttcaagtacctggcgcccttc
ctgaggaatgttgagcttaacaaacctatgcaaatcctctacaagggtaccctgcgtgtc
cttctggtcctactgcatgacttcccagagttcctgtgcgactaccactacggcttctgc
gacgtcatcccgcccaactgcatccagctccgcaacctgattctgagtgccttcccacgc
aacatgaggcttccagaccccttcactcccaatctgaaggttgacatgctcagcgagatc
aacatcgctccgcgcatcctcacaaacttcaccggagtgatgccctctcagttcaagaag
gatctggactcgtacctgaagacacgctcccccgtcaccttcctctctgagctccgcagc
aatctgcaggtagggggcgccactctgggtccctggaagtatttgcagcacaacgacaca
tctttagaacaggtgtcaaatgagccaggcaaccgttacaacatccagctgatcaacgct
ctggtgctgtatgtgggaacccaggccatcgcacacatccacaacaagggcagcaccccc
tccatgagcaccatcactcactcagcccacatggacatcttccagaacctggctgtggac
ctggacactgaggggcgttatctcttcctgaatgccattgccaatcagctgcgctaccca
aacagccacacccattacttcagctgcaccatgctgtacctgtttgctgaggccaacact
gaggcaatccaggagcagattaccagggttcttctggagaggctgattgtgaacaggcct
catccctggggactgctcatcaccttcatcgagctcatcaagaatcccgccttcaagttc
tggagccacgactttgtacactgtgccccggagatcgagaagttgttccagtcagtggct
cagtgctgcatggggcaaaagcaggctcagcaggtgatggagggcactggtgccagttag
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integrated database retrieval system
