Salvelinus fontinalis (brook trout): 129868365
Help
Entry
129868365 CDS
T11136
Symbol
capn1a
Name
(RefSeq) calpain 1, (mu/I) large subunit a
KO
K01367
calpain-1 [EC:
3.4.22.52
]
Organism
sfon Salvelinus fontinalis (brook trout)
Pathway
sfon04141
Protein processing in endoplasmic reticulum
sfon04210
Apoptosis
sfon04217
Necroptosis
sfon04218
Cellular senescence
sfon04382
Cornified envelope formation
Brite
KEGG Orthology (KO) [BR:
sfon00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
04141 Protein processing in endoplasmic reticulum
129868365 (capn1a)
09140 Cellular Processes
09143 Cell growth and death
04210 Apoptosis
129868365 (capn1a)
04217 Necroptosis
129868365 (capn1a)
04218 Cellular senescence
129868365 (capn1a)
09150 Organismal Systems
09158 Development and regeneration
04382 Cornified envelope formation
129868365 (capn1a)
09180 Brite Hierarchies
09181 Protein families: metabolism
01002 Peptidases and inhibitors [BR:
sfon01002
]
129868365 (capn1a)
Enzymes [BR:
sfon01000
]
3. Hydrolases
3.4 Acting on peptide bonds (peptidases)
3.4.22 Cysteine endopeptidases
3.4.22.52 calpain-1
129868365 (capn1a)
Peptidases and inhibitors [BR:
sfon01002
]
Cysteine peptidases
Family C2: calpain family
129868365 (capn1a)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Peptidase_C2
Calpain_III
EF-hand_6
EF-hand_1
EF-hand_7
CAPN13-like_C_EFh
Motif
Other DBs
NCBI-GeneID:
129868365
NCBI-ProteinID:
XP_055798307
LinkDB
All DBs
Position
1:6765097..6812211
Genome browser
AA seq
702 aa
AA seq
DB search
MSGGISASIATSRLQAEGMGSNDHAVPFLNQDYEALRQECLETGCLFQDPYFLAEPPSLG
FKELAPFSSKTRDVEWMRPTELTGDPQFILGGATRTDICQGALGDCWLLAAIASLTLNER
LLHRVVPHGQSFQEDYAGIFHFQFWQFGEWVDVVIDDRLPTKDGEIMFVHSAEGNEFWSA
LLEKAYAKLNGSYEALSGGSTTEGFEDFTGGVSEMYELRKAPRDLYRIISKALDRGSLLG
CSIDITSAFDMESVTFKKLVKGHAYSVTGLKKVDYQSQVERLIRVRNPWGQVEWTGAWSD
NSPEWDELDPSEREDLHLKMEDGEFWMSFQEFLRQFSRLEICNLTADALSEDGLSHWNTI
KFHGMWRRGSTAGGCRNHPNTFWINPQYKITLLEEDDDPEDDEVACSFLVALMQKDRRRY
RKQGQDMHTIGFAIYEIPEEYRGCQNVHLKKDFFLTHSSCARSETFVNLREVSNRLCLPP
GEYLIVPSTFESGQEADFVLRVFTEKQSETEELDDEIAADLEDEDDISEDDIEDSFKSMF
AQLAGEDMEISVRELRTILNRVVTRHEDLKTDGFSMESCRTMVNLMDKDGTARLGLVEFQ
MLWNKIRKWLVIYREYDMDKSGSMSSYEMRLAVESAGFKLNNRLNQVLVARYAENEAIDF
DNFICCLVKLEAMFRSFQQLDKEGEGVAELNITEWLYMTMCG
NT seq
2109 nt
NT seq
+upstream
nt +downstream
nt
atgtcagggggaatctctgctagcatagccaccagcagactgcaagctgagggaatgggc
tccaacgaccacgccgtacccttccttaaccaggactatgaggctttgaggcaggagtgt
ctggagacggggtgtctgttccaggacccctacttcctagccgagcctccctctctgggc
ttcaaggaactggcccccttctcctccaagaccagggacgtggaatggatgagacccacg
gagctgacaggcgaccctcagttcatcctgggaggagctaccagaacagacatctgtcag
ggagctctaggtgattgctggctcctagcagccatagcctctctaaccctcaatgagagg
ctgctccaccgagtggtcccacatggtcagtccttccaagaggactatgctgggatcttc
cactttcagttctggcagtttggtgagtgggtggacgtggtgattgacgaccggctgcca
acgaaggatggagagatcatgttcgttcactcagccgagggcaatgagttctggagcgcc
ctgctggagaaggcctacgccaagttgaatggttcctacgaggctctgtctggaggcagc
accacagaaggctttgaggacttcaccggcggtgtgtctgagatgtacgagctccgtaag
gctccacgggacctgtacaggatcatcagcaaagccctggacagaggctccttgctgggc
tgctccatcgacatcaccagtgcctttgacatggagtctgtgacgttcaagaagctggtg
aaaggtcatgcttactcagtcaccggcctaaagaaggtggactaccagagtcaggtggag
aggctgatcagggtgagaaacccctggggacaggtggagtggactggcgcctggagtgac
aattctcctgagtgggatgagttggacccatctgagagagaggacctgcatctaaagatg
gaggatggcgagttctggatgtcattccaggagttcctgaggcagttttcccgtctggag
atctgtaacctgacggcggacgctctgagtgaggacggcctcagccactggaacaccatc
aagttccacggcatgtggagacgggggagtaccgccgggggctgccgcaaccaccccaac
acgttctggatcaacccccagtataagatcactctgctagaggaggatgacgaccctgag
gatgacgaggtggcttgtagcttcctggtggcgttgatgcagaaggacaggaggaggtac
cggaaacagggacaggacatgcacaccatcgggttcgccatctacgagattccagaagag
tacaggggctgtcagaacgtgcacctgaagaaagacttcttcctgacccattcatcctgc
gctcgctctgagaccttcgtcaacttgagagaggtcagcaaccgtctctgtctgcctccg
ggagaatatctcatcgtcccctccaccttcgagtctggccaggaggccgactttgtcctg
agagtcttcactgagaaacagtctgagacagaagagctagacgatgaaatcgcagcagac
ctggaagatgaggatgacatcagtgaagatgacatcgaagactcattcaaatccatgttt
gctcagctggcaggagaggatatggagatttctgtccgtgagcttaggaccatcctgaac
agagtagtgactagacacgaagacctgaagacagacggcttcagtatggagtcctgtagg
accatggtcaaccttatggataaggatggcactgcccgtcttggcctggtagagttccag
atgctctggaataagatcaggaagtggctggtcatctatagagaatatgacatggacaag
tcgggatccatgagctcctatgagatgcgacttgctgtggagtcggcaggttttaaactg
aacaacagactgaatcaggtcctagtggctcgctatgctgagaatgaggccatagacttt
gacaacttcatctgctgtctggtcaaactggaagccatgtttagatctttccagcagcta
gacaaagagggagaaggagtggctgagctgaacatcactgagtggctgtatatgaccatg
tgtggttga
DBGET
integrated database retrieval system
