Shewanella frigidimarina: Sfri_0141
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Entry
Sfri_0141 CDS
T00395
Name
(GenBank) DNA-directed RNA polymerase, beta subunit
KO
K03043
DNA-directed RNA polymerase subunit beta [EC:
2.7.7.6
]
Organism
sfr
Shewanella frigidimarina
Pathway
sfr03020
RNA polymerase
Brite
KEGG Orthology (KO) [BR:
sfr00001
]
09120 Genetic Information Processing
09121 Transcription
03020 RNA polymerase
Sfri_0141
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
sfr03021
]
Sfri_0141
03400 DNA repair and recombination proteins [BR:
sfr03400
]
Sfri_0141
Enzymes [BR:
sfr01000
]
2. Transferases
2.7 Transferring phosphorus-containing groups
2.7.7 Nucleotidyltransferases
2.7.7.6 DNA-directed RNA polymerase
Sfri_0141
Transcription machinery [BR:
sfr03021
]
Prokaryotic type
Bacterial type
RNA polymerase
Core subunits
Sfri_0141
DNA repair and recombination proteins [BR:
sfr03400
]
Prokaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TCR (transcription coupled repair) factors
DNA-directed RNA polymerase complex (RNAP)
Sfri_0141
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNA_pol_Rpb2_6
RNA_pol_Rpb2_1
RNA_pol_Rpb2_3
RNA_pol_Rpb2_7
RNA_pol_Rpb2_45
RNA_pol_Rpb2_2
Motif
Other DBs
NCBI-ProteinID:
ABI70004
UniProt:
Q089R1
LinkDB
All DBs
Position
157329..161360
Genome browser
AA seq
1343 aa
AA seq
DB search
MVYSYSEKKRIRKDFGKRPKVLDIPYLLSIQLDSFKKFTDHDPTGERGLEAAFRSVFPIK
SFSGYSELQYVSYKLGEPVFDVKECQIRGVTYSAPLRVKLRMVLFDREAAAGTVKDIKEQ
EVYMGDIPMMTNNGTFVINGTERVIVSQLHRSPGVFFDHDRGKTHSSGKVLYNARIIPYR
GSWLDFEFDPKDALFVRIDRRRKLPATIILRALEYSTQDILDLFFERIEFKIKKDSLVMA
LVPDRLRGETAGYDIKDAEGALLVEAGRRITARHIKQLEKTNTTELEVPVDYIVGKYAAQ
DYIDEDTGEVLVTANSEITLEDLAKLSLAGIKNIDTLFINDLDHGAYIADTLRIDSTTNR
LEALVEIYRMMRPGEPPTKDAAEGLFQNLFFSEERYDLSKVGRMKFNRRLEIAEDEGNGV
LSKEDIVSVMKKIIEIRNGYDEVDDIDHLGNRRIRSVGEMAENQFRVGLVRVERAVRERL
SLGDLNELMPQDLINAKPISAAVKEFFGSSQLSQFMDQNNPLSEVTHKRRISALGPGGLT
RERAGFEVRDVHPTHYGRLCPIETPEGPNIGLINSLASFARTNSYGFLETPYRKVVDGVI
TDDVEYLSAIEEGRYVIAQANIEVDADGRMAEEQIACRHKGESTFMRAADVQYMDVSPQQ
IISVAASLIPFLEHDDANRALMGANMQRQAVPTLRADKPLVGTGIERTLAVDSGVVVAAK
RGGVVDYVDASRIVVKVNEDELHAGEAGIDIYNLTKYTRSNQNTCINQRPCCSVGEPVVR
GDVLADGPSTDLGDLALGQNMRIAFMPWNGYNFEDSILISERVAQEDRFTTIHIQELSCI
ARDTKLGSEEITADIPNVGESALSKLDESGIVYIGAEVKGGDILVGKVTPKGETQLTPEE
KLLRAIFGEKASDVKDSSLRVPNSVKGTIIDVQVFTRDGVEKDKRALEIEDMHVRQARKD
LGEEFKILEEGVLGRARNLLLSVGYSEAKLAEIPRKDVLIQVIDDETKQTELEQLAEQHE
ELKADFDKTFEIKRRKITQGDDLAPGVLKIVKVYLAVKRTIQPGDKMAGRHGNKGVISKI
CPVEDMPYDEEGNPVDIVLNPLGVPSRMNIGQVLEVHMGAAAKGIGNKITAMLEEQREIA
ELRGYIKQVYELGDDVLQRVDIDSFTDDEVVRLATNLKGGIPIATPAFDGAKEKEIKQML
ALAGLPESGQLTLCDGRTGNEFERKVTVGYMYMLKLNHLVDDKMHARSTGSYSLVTQQPL
GGKAQFGGQRFGEMEVWALEAYGAAYTLQEMLTVKSDDVNGRTQMYKNIVDGNHQMQPGM
PESFNVLLKEIRSLGINIELDQE
NT seq
4032 nt
NT seq
+upstream
nt +downstream
nt
atggtttactcctattctgaaaagaagcgtattcgcaaagactttggtaagcgtccaaaa
gttttggacatcccttatttattgtctatccagttagactcttttaagaagttcaccgat
catgaccctacgggtgagcgtggcttagaagccgcattccgtagcgtttttcctatcaag
agcttttctggctattctgagctgcaatatgtcagctacaagctaggtgagccagttttt
gatgtgaaagaatgtcagatccgcggtgtaacttattcggcaccactacgcgttaaatta
cgcatggtgttgttcgaccgtgaagctgctgctggcactgttaaagacattaaagagcaa
gaagtctacatgggtgatattcctatgatgactaataacggtactttcgttattaacggt
actgagcgtgtaatcgtgtctcagttacaccgttctccaggtgtgttctttgatcatgac
cgtggtaaaacccactcttctggtaaggtgctgtataacgcacgtattattccttaccgt
ggttcatggcttgactttgaatttgatcctaaagatgctctattcgttcgtattgaccgt
cgtcgcaaattaccagcgactattatcttacgtgcacttgaatattctactcaagatatc
ctcgatttattcttcgagcgtattgagtttaagattaaaaaagattcattagtcatggca
cttgtgcctgaccgtctacgtggtgaaactgctggctatgacattaaagatgctgaaggc
gctttattggttgaagctggtcgtcgcatcactgcacgtcatattaagcaacttgaaaaa
accaatactactgagctagaagtgccagtagattatattgttggtaagtatgctgctcaa
gactacatcgatgaagataccggtgaagttttagtgactgcaaacagcgagattacctta
gaagatttagctaagttatcacttgctggtattaagaatattgatactttatttatcaat
gatcttgatcacggtgcttatattgctgatacattgcgcattgattcaacaactaaccgc
ttagaagcactagttgaaatctatcgtatgatgcgtcctggcgagccaccaaccaaagat
gcagctgaaggtttattccaaaacctattcttcagtgaagagcgttatgacctatctaaa
gtaggtcgtatgaagttcaaccgtcgtcttgagattgctgaagacgaaggtaacggtgtg
ttgtctaaagaagacatcgtatctgttatgaagaaaatcatcgaaatccgtaacggttat
gatgaagtcgacgatattgaccacttaggtaaccgtcgtattcgtagcgttggtgaaatg
gctgaaaatcagttccgtgttggtttagtccgtgttgagcgtgctgttcgtgaacgtcta
tctttaggcgatttaaacgagcttatgccacaagacttaattaacgctaagccaatttct
gcggcagtgaaagaattctttggttcttcacagttgtcacagtttatggatcaaaacaac
ccgctatcagaagtaacgcataagcgtcgtatttctgcgcttggtccaggtggtttgact
cgtgagcgtgctggtttcgaagttcgtgacgtacatccaactcactacggtcgtttatgt
ccaattgagaccccagaaggtccaaacattggtctaatcaactcgttagcaagttttgca
cgtactaactcttacggctttttagaaacaccttaccgcaaagtggttgatggtgtgatt
actgatgatgttgaatacttatcagcaatcgaagaaggtcgttacgttattgctcaggct
aacatcgaagttgatgctgatggccgtatggcagaagaacaaattgcttgtcgccacaaa
ggtgaatctacctttatgcgcgcagctgatgttcagtatatggacgtatctccacaacag
attatttctgttgcagcatcattaattccgttcttagaacacgatgatgctaaccgcgca
ttgatgggtgcaaacatgcaacgtcaagcagtacccactttacgtgctgataagccgtta
gtcggaacgggtattgaacgtactcttgctgttgactctggtgtggttgtagctgctaaa
cgtggcggtgtggttgattatgttgatgctagtcgtatcgtagttaaagtaaatgaagat
gagctacacgcaggtgaagccggtatcgacatttataacctaactaaatatacccgttca
aaccaaaacacttgtattaaccaacgtccttgttgttctgttggtgagcctgtggttcgt
ggtgacgtattggcagatggtccatctaccgatttaggtgatttggctcttggtcagaac
atgcgtatcgcgttcatgccttggaacggttataacttcgaagattcgatcttaatttct
gagcgcgtagcgcaagaagaccgtttcactactatccatatccaagagctttcttgtatt
gctcgtgatactaaattgggtagcgaagaaatcactgctgatattccaaacgtaggtgag
tctgctttatctaaactagatgaatcaggtatcgtttatattggtgcagaagtgaagggt
ggcgacattctagtgggtaaagtgacacctaaaggtgaaacacagttaacccctgaagag
aaactactccgagctatttttggtgaaaaagcgtctgatgttaaggacagctcattacgt
gttcctaactcagtgaaaggcaccatcatcgacgtacaggtatttacccgtgacggcgtt
gagaaagacaagcgtgcgcttgaaattgaagacatgcacgttcgtcaagctcgtaaagac
ttaggcgaagagttcaagatccttgaagaaggcgtattgggccgtgcacgtaacttgtta
ctgtctgtgggttattctgaagctaagttagctgagatcccacgtaaagacgtattgatt
caagttatcgacgacgaaactaaacaaactgaattagagcagttagctgaacagcacgaa
gagctaaaagctgactttgataagacatttgaaattaagcgtcgtaagatcacccaaggt
gatgacttggctcctggtgtattgaagattgttaaggtttaccttgcagttaaacgtact
atccagcctggtgacaagatggcgggtcgtcatggtaacaaaggtgttatctcgaagatt
tgtcctgttgaagacatgccatacgacgaagaaggtaatcctgtagacatcgtacttaac
ccattgggcgtaccatcgcgtatgaacatcggtcaggtacttgaagtccacatgggcgca
gcagctaaaggtatcggtaataagattactgctatgcttgaagagcagcgtgaaattgcc
gaacttcgtggttacatcaagcaagtatacgaattaggtgatgacgtgcttcagcgcgtt
gatatcgattcgtttactgatgatgaagttgtgcgcttggctaccaaccttaaaggtggt
attccaattgcaacaccagcattcgacggtgctaaagagaaagagatcaagcaaatgctt
gctcttgcaggcttacctgagtctggccagttgacattatgtgacggccgtaccggtaac
gaatttgagcgtaaagtaaccgttggttacatgtatatgcttaaattgaaccacttagtt
gatgacaagatgcatgctcgttctacgggttcatacagcttagtgactcaacaaccattg
ggcggtaaagctcaattcggtggtcagcgtttcggtgagatggaagtgtgggcacttgaa
gcatatggtgctgcttatactctacaagaaatgctaacagttaagtcagatgacgttaac
ggtcgtactcagatgtataaaaacatcgtcgacggtaaccatcagatgcaaccaggcatg
cctgagtctttcaacgtattgttgaaggaaattcgttcacttggtattaatatcgagttg
gaccaagagtaa
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