Sorex fumeus (smoky shrew): 130037447
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Entry
130037447 CDS
T10594
Symbol
XPC
Name
(RefSeq) DNA repair protein complementing XP-C cells
KO
K10838
xeroderma pigmentosum group C-complementing protein
Organism
sfum Sorex fumeus (smoky shrew)
Pathway
sfum03420
Nucleotide excision repair
Brite
KEGG Orthology (KO) [BR:
sfum00001
]
09120 Genetic Information Processing
09124 Replication and repair
03420 Nucleotide excision repair
130037447 (XPC)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
sfum03400
]
130037447 (XPC)
DNA repair and recombination proteins [BR:
sfum03400
]
Eukaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
GGR (global genome repair) factors
XPC-HR23B-CETN2 complex
130037447 (XPC)
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
BHD_3
Rad4
BHD_1
BHD_2
Motif
Other DBs
NCBI-GeneID:
130037447
NCBI-ProteinID:
XP_055985266
LinkDB
All DBs
Position
Unknown
AA seq
1015 aa
AA seq
DB search
MARDGAAAREPRRRGARGAKAQRQEQEADSDFEDEKPAKKRPPARVSPGKRKRGRSNPGG
PADGPTQKKVAQRTGKPARSQVAGKDALSAGKGRRASPGPRQKAQRPRSETPPADTGSLE
GEDEDESEDDWEEVEDSDFEDEKPAKKRPPARVSPGKRKRGRSDPGGPADSPTQKKVAQR
TGKPARSQVVGEDALSAGKGRRASPRPHQKAQHPKSETPPADMDSLEGEDEDEDESEDDW
EEVEELGEAGPDPTGESAAFSSPVKPVEIEIETPEQAKKRERSEKLKTEFETYVRRMMKR
FNKEVHENTHKVHLLCLLARGLQRNHICCQPDLLAIGLSIVPANFTKVPPQDVDIRYLSN
LVKWFIGTFTVNAELSTDDHHDLQTTLERRFAIYAARDEEELVYIFLLILRALQLLSRLV
LSLQPIPLKVTAAKGKKPPQKEPADSARGSSAAPSPVAGHQLKPKAAGPGGSSRPRAKGK
RSKTSTAGRKRGAAASSGEDNEEEEDGEQEGAPRARRGRERRAAARRSYKEESGSDEAGS
GSGPELSGEDASPSRPQKRRTKAGSSSDSYSPPRRSPPLSPGLPTASVSSKRGRTASKGA
PGPGVDQWLEVFCEREEKWLSVDCVLGVVAEPRACYQHATKPLTYVVGIDSDGRVRDITQ
RYDPVWMTVTRKSRVDAEWWAETLRPHQSPLLEREKKEDLEFQAKHLDQPLPTAIGTYKN
HPLYALKRHLLKYEAIYPETAAILGYCRGEAVYSRDCVHTLHSRDTWLKQARVVRLGEVP
YKMVKGYSNRARKARQAEPQLRDQNDLALFGRWQTEEYQPPVAVDGKVPRNEFGNVYLFL
PSMMPVGCVQLHLPNLHRVARKLDIDCVPAVTGFDFHGGYSHPVTEGFIVCEEYKDVLLA
AWENEQALLEKKEREKREKRALGNWKLLVRGLLIRERLRRRYGAKSEPVAPHADAGGGLS
SDEEEGTSAQATARVLAASWPQNRKAEEEQKPEQPKKTKRRRKEEESHLFPFEKL
NT seq
3048 nt
NT seq
+upstream
nt +downstream
nt
atggctcgggacggcgccgcagcccgggagccgcgccgacgcggagcgcgcggcgcgaag
gcccagcgccaggagcaggaggcggattctgactttgaagatgagaaacctgccaagaag
cgcccgccggccagggtctccccaggaaagaggaagaggggccgcagtaacccggggggc
ccagcagacggccccacacagaagaaagtggcccagaggactggaaagcccgccaggtcc
caggtggctgggaaggacgccctcagcgcggggaagggtcgcagggcatcccctggaccc
cgccagaaggcccagcgccccaggagcgagacgccacccgcggacacaggcagtctggaa
ggagaggatgaggacgagagtgaggatgactgggaggaggtagaagattctgactttgaa
gatgagaaacctgccaagaagcgcccgccggccagggtctccccaggaaagaggaagagg
ggccgcagtgacccagggggcccagcagacagccccacacagaagaaagtggcccagagg
actggaaagcccgccaggtcccaggtggtaggggaggacgccctcagcgcggggaagggt
cgcagggcgtcccccaggccccaccagaaggcccagcaccccaagagcgagacgccgccc
gcggacatggacagcctggaaggagaagacgaggacgaggatgagagcgaagatgactgg
gaagaggtggaagaactgggtgaggcgggtcccgaccccaccggagagagcgcggccttc
tccagccctgtgaagccagtggagatcgagatcgagacgccggagcaggcaaagaaaaga
gagaggagtgaaaagttgaagacggagtttgagacctacgtccggaggatgatgaagcgt
ttcaacaaagaagtgcacgagaacacacacaaggtccacctcctgtgcctgctggcccgc
ggccttcagcgcaaccacatctgctgccagcccgacctgctggccatcggcctgtccatc
gtgccggctaacttcaccaaagtgcctccccaggacgtggacatccgctacctgtccaac
ctggtgaaatggttcatcggcaccttcaccgtgaacgctgagctctccaccgacgaccac
catgacctgcagaccaccctggagaggagattcgccatttacgccgcccgcgacgaggag
gagttggtctacatcttcctgctgatcctccgggccctgcagctcctcagccgcctggtc
ctgtccctgcagcccatcccgctcaaggtcacggccgccaagggaaagaagccgccccag
aaggaacccgcagacagtgcccggggctcctccgcagcccccagccccgtggccggacac
cagctcaaaccgaaggcggccggaccagggggcagcagccgaccccgtgccaaagggaag
aggagcaagacctccacagccggcaggaaacggggtgccgcagcctccagcggggaagac
aacgaggaggaggaggacggggagcaggaaggagccccgagagcccgtcgtggccgggag
cggcgggcggccgccagaaggtcctacaaagaggagagcgggagcgatgaggcgggcagc
ggctctggccctgagctctccggcgaggacgcctcgcccagccggccccagaagcggagg
accaaggcagggtcctccagcgactcctacagcccccctcgcagaagccccccgctgtct
ccgggcctgcccacggcttctgtgagcagtaagagaggcaggaccgcatccaaaggggcc
ccagggcccggggtggaccagtggctggaggtgttctgtgagcgggaggagaagtggctg
agcgtggactgcgtccttggcgtggtggccgagccccgggcctgctaccagcatgccacc
aagcccctgacctacgtggtgggcatcgacagcgacggccgcgtccgggacatcacccag
aggtatgaccccgtctggatgacggtgacccgcaagagccgagtggacgccgagtggtgg
gcagagaccttgaggccacaccagagccccctgttggagagagaaaagaaggaggacctg
gagttccaggcaaagcacctggaccagcctctgcccactgccatcggcacctacaagaac
caccccctgtacgccctgaagcggcacctgctgaagtacgaggccatctaccccgagacg
gccgccatcctcggctactgccgcggggaagccgtgtactccagggactgcgtgcacacg
ctgcactcccgggacacatggctgaagcaggcgagagtggtgcgtctgggagaagtgccg
tacaagatggtcaagggctactccaatcgggcccggaaagcacgccaggccgagccccag
ctgcgcgaccagaacgacctggccctgttcggccggtggcagacagaggagtaccagccg
cctgtggctgtggacggcaaggttccccggaacgagtttgggaacgtgtacctcttcctg
cccagcatgatgcccgtgggctgcgtccagctacatttgcccaacctgcaccgcgtggcc
cgcaagctggacatcgactgtgtcccggcagtcactggctttgacttccacggaggctac
tcccaccccgtgacggagggcttcatcgtgtgcgaggagtacaaggatgtgctgctggcc
gcctgggagaacgagcaggcgctgcttgagaagaaggagcgggagaaacgagagaagcgg
gccctggggaactggaagctgctggtccggggactgctcatccgggagcggctgcggagg
cgctacggggccaagagcgagcccgtggctccccacgcagatgccggagggggactgtcg
tctgatgaggaggagggcaccagtgcccaggccacggccagggtcctagctgcctcctgg
ccccagaaccgcaaggccgaagaggagcagaagccggagcagcccaagaaaaccaagagg
agaaggaaggaggaagagtcccacctcttccctttcgagaagctgtga
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