Sorex fumeus (smoky shrew): 130037851
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Entry
130037851 CDS
T10594
Symbol
UPF3A
Name
(RefSeq) LOW QUALITY PROTEIN: regulator of nonsense transcripts 3A
KO
K14328
regulator of nonsense transcripts 3
Organism
sfum Sorex fumeus (smoky shrew)
Pathway
sfum03013
Nucleocytoplasmic transport
sfum03015
mRNA surveillance pathway
Brite
KEGG Orthology (KO) [BR:
sfum00001
]
09120 Genetic Information Processing
09122 Translation
03013 Nucleocytoplasmic transport
130037851 (UPF3A)
03015 mRNA surveillance pathway
130037851 (UPF3A)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
sfum03019
]
130037851 (UPF3A)
Messenger RNA biogenesis [BR:
sfum03019
]
Eukaryotic type
mRNA surveillance and transport factors
Surveillance factors
Surveillance complex
130037851 (UPF3A)
mRNA cycle factors
P-body specific factors
130037851 (UPF3A)
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
Smg4_UPF3
Motif
Other DBs
NCBI-GeneID:
130037851
NCBI-ProteinID:
XP_055985793
LinkDB
All DBs
Position
Unknown
AA seq
481 aa
AA seq
DB search
MRPEKAGPGGAGAAAARGAGGREKPSSVEVQFRWESPPRQAEGPRASSSGGGGGAGDPRE
EKRPVLSKVVIRRLPPGLTKEQLEEQLRPLPAHDYFEFRAADLSLHPHLYSRAYINFRNP
DDILLFRDRFDGYIFIDSKGLEYPAVVEFAPFQKITKKKLKKKDVKTGSIEDDPEYKKFL
ETYCIEEEKTSANPETLLGDIEAKTRELIARRTTPLLEYIKNRKLEKQRIREEKREERRR
RELEKKRLREEEKKKRREEERFKKKEADKQKKPAEKEVRIKLLKQPEKGEEVPLEKARER
GEEMDAGDGKQEHCPGCASVRPRPHEGSLEELQESEPTAADSEHRVISREASRERTASSR
YHLDDSKKPGAYYEFDRLLEKNDEEPKXGKGLAPDRGKKGRQEGGAALEALERXKREQKS
ADGRASEQERMGSKDWPALQLXQPGACIQAREYGGRASEEDRDGRRGELKRPREWIHAPC
L
NT seq
1446 nt
NT seq
+upstream
nt +downstream
nt
atgcgcccggagaaggcaggccccgggggcgccggggcggcggcggcgcggggcgcgggc
ggcagggagaagccgtcgtccgtcgaggtgcagttccgctgggagtcgcccccacggcag
gccgaggggcctcgggcctcgtcctccggcggcgggggcggcgcgggcgaccctcgcgag
gaaaagaggccggtcctgagcaaggtggtgatccggcgcctcccgccgggcctcaccaag
gagcagctggaggagcagctgcgcccgctgcccgcgcacgactacttcgagttccgcgcc
gccgacctcagtcttcatcctcatctctactcaagggcatacattaatttcagaaatccc
gatgacatccttctttttagagatcgttttgatggatatatcttcattgacagtaaaggc
ctagaatatcctgcagtggtagagtttgctccattccagaagataactaaaaagaagcta
aagaaaaaagatgtcaaaactggaagcattgaagatgacccagaatataagaaatttcta
gaaacttactgtatagaagaagagaaaactagtgccaatcctgaaactcttctgggagac
atagaggcaaagacaagagaacttattgctcgaagaaccacacctcttttggaatatatt
aaaaatagaaaattagaaaagcagagaattcgagaagagaaaagagaagagaggaggcgg
cgggagttggagaagaaacgcttacgtgaggaagaaaaaaagaagagaagagaagaagaa
agatttaagaagaaagaggcagacaaacagaaaaaacctgctgagaaagaagtaaggatt
aagctacttaagcagccagaaaagggagaggaagtcccccttgagaaagcccgagaaaga
ggtgaggagatggatgctggcgatgggaagcaggagcactgccctggctgtgcctctgtg
cggccccggccccacgagggatcacttgaggagctccaggaaagtgagccaacggctgca
gacagtgagcacagagtgatatcaagagaagcttctagagaaagaactgcaagctccaga
taccacttggatgacagtaaaaaacctggagcttactatgagtttgacaggttgttagaa
aaaaatgatgaagagccaaaataggggaaaggacttgctcctgacagagggaagaagggg
cgtcaagagggtggtgctgctctggaggctttggaacganccaagagagagcagaagagt
gctgatggccgggcatccgaacaggagcgcatgggaagcaaggactggccagctttgcag
ctctagcagccaggagcttgcatccaagcccgagagtatggtggcagagcctctgaggag
gaccgtgatgggaggaggggtgagctcaaaaggcccagggaatggattcatgcgccatgt
ttgtga
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