Sorex fumeus (smoky shrew): 130038059
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Entry
130038059 CDS
T10594
Symbol
TAF1
Name
(RefSeq) transcription initiation factor TFIID subunit 1 isoform X1
KO
K03125
transcription initiation factor TFIID subunit 1 [EC:
2.3.1.48
2.7.11.1
]
Organism
sfum Sorex fumeus (smoky shrew)
Pathway
sfum03022
Basal transcription factors
Brite
KEGG Orthology (KO) [BR:
sfum00001
]
09120 Genetic Information Processing
09121 Transcription
03022 Basal transcription factors
130038059 (TAF1)
09180 Brite Hierarchies
09181 Protein families: metabolism
01001 Protein kinases [BR:
sfum01001
]
130038059 (TAF1)
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
sfum03021
]
130038059 (TAF1)
03036 Chromosome and associated proteins [BR:
sfum03036
]
130038059 (TAF1)
Enzymes [BR:
sfum01000
]
2. Transferases
2.3 Acyltransferases
2.3.1 Transferring groups other than aminoacyl groups
2.3.1.48 histone acetyltransferase
130038059 (TAF1)
2.7 Transferring phosphorus-containing groups
2.7.11 Protein-serine/threonine kinases
2.7.11.1 non-specific serine/threonine protein kinase
130038059 (TAF1)
Protein kinases [BR:
sfum01001
]
Serine/threonine kinases: Other
TAF1 family
130038059 (TAF1)
Transcription machinery [BR:
sfum03021
]
Eukaryotic type
RNA polymerase II system
Basal transcription factors
TFIID
130038059 (TAF1)
Chromosome and associated proteins [BR:
sfum03036
]
Eukaryotic type
Histone modification proteins
HATs (histone acetyltransferases)
130038059 (TAF1)
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
DUF3591
Bromodomain
TBP-binding
zf-CCHC_6
Cac1_C
Motif
Other DBs
NCBI-GeneID:
130038059
NCBI-ProteinID:
XP_055985964
LinkDB
All DBs
Position
Unknown
AA seq
1886 aa
AA seq
DB search
MSDTDSDEDSAGGGPFSLAGFLFGNINGAGQLEGENVLDDECKKHLAGLGALGLGNLITE
LTANEELAGTDGALVNDEGWIRSTEDAVDYSDINEVAEDESRRYQQTMGSLQPLYHLGIR
HMASHMQSKYSTGYDEDDYDADCEDIDCKLMPPPPPPPGPMKKDKDQDAIITVSEDGEGI
ILPSIIAPSSLASEKVDFSSSSDSESDMGPQEASQTESEDGKLTLPLAGIMQHDATKLLP
SVTELFPEFRPGKVLRFLRLFGPGKNVPSVWRSARRKRKKKHRELIQEEQTQEVESSVDL
EVDQKSLWNYDYAPPPPPEQCLSDDEITMMAPLESKFSQSTGDIDKVTDTKPRVAEWRYG
PARLWYDMLGVSEDGSGFDYGFKLRKMEHEPVIKCRTVEDLKKFEEGSGVDLLADENFLM
VTQLHWEDDIIWDGEDVKHKGTKPQRASLAGWLPSSMTRNAMAYNVQQGFAATLDDDKPW
YSIFPIDNEELVYGRWEDNIIWDAQAMPRLLEPPILTLDPNDENLILEIPDEKEEAASNS
PSKENKKESSLKKSRILLGKTGVIKEEPQQNMSQPEVKDPWNLSNDEYYYPKQQGLRGTF
GGNIIQHSIPAVELRQPFFPTHMGPIKLRQFHRPPLKKYSFGALSQPGPHSVQPLLKHIK
KKAKMREQERQASGGGEMFFMRTPQDLTGKDGDLILAEYSEENGPLMMQVGMATKIKNYY
KRKPGKDPGAPDCKYGETVYCHTSPFLGSLHPGQLLQAFENNLFRAPIYLHKMPETDFLI
IRTRQGYYIRELVDIFVVGQQCPLFEVPGPNSKRANTHIRDFLQVFIYRLFWKSKDRPRR
IRMEDIKKAFPSHSESSIRKRLKLCADFKRTGMDSNWWVLKSDFRLPTEEEIRAMVSPEQ
CCAYYSMIAAEQRLKDAGYGEKSFFAPEEENEEDFQMKIDDEVRTAPWNTTRAFIAAMKG
KCLLEVTGVADPTGCGEGFSYVKIPNKPTQQKDDKEPQPVKKTVTGTDADLRRLSLKNAK
QLLRKFGVPEEEIKKLSRWEVIDVVRTMSTEQARSGEGPMSKFARGSRFSVAEHQERYKE
ECQRIFDLQNKVLSSTEVLSTDTDSSSAEDSDFEEMGKNIENMLQNKKTSSQLSREREEQ
ERKELQRMLLAAGSASAGNNHRDDDTASVNSLNSSATGRCLKIYRTFRDEEGKEYVRCET
VRKPAVIDAYVRIRTTKDEEFIRKFALFDEQHREEMRKERRRIQEQLRRLKRNQEKEKLK
GPPEKKPKKMKERPDLKLKCGACGAIGHMRTNKFCPLYYQTNAPPSNPVAMTEEQEEELE
KTVIHNDNEELIKVEGTKIVLGKQLIESADEVRRKSLVLKFPKQQLPPKKKRRVGTTVHC
DYLNRPHKSIHRRRTDPMVTLSSILESIINDMRDLPNTYPFHTPVNAKVVKDYYKIITRP
MDLQTLRENVRKRLYPSREEFREHLELIVKNSATYNGPKHSLTQISQSMLDLCDEKLKEK
EDKLARLEKAINPLLDDDDQVAFSFILDNIVTQKMMAVPDSWPFHHPVNKKFVPDYYKVI
VSPMDLETIRKNISKHKYQSRESFLDDVNLILANSVKYNGPESQYTKTAQEIVNVCYQTL
TEYDEHLTQLEKDICTAKEAALEEAELESLDPMTPGPYTPQPPDLYDNNTSLSVSRDASV
FQDESNMSVLDIPAASPEKPVIQEGEDADGDLADEEGTVQQTQASVLYEDLLMSEGEDDE
EDAGSDEEGDNPFSAIQLSESGSDSDVGSGGIRSKLPRMLQENTRMGMENEESMMSYEGD
GGEASHGLEDSNISYGSYEEPDPKSNTQDTSFSSIGGYEVSEEEDDEEEEQRSGPSVLSQ
VHLSEDEEDSEDFHSIAGDSELDSDE
NT seq
5661 nt
NT seq
+upstream
nt +downstream
nt
atgtccgacacggatagcgacgaagattcggctggaggcggtcccttttctttagccggt
tttctttttggcaacattaatggagccggacagctagagggggaaaacgtcttggatgat
gagtgtaagaagcacttggcaggcttgggagctttgggtctgggcaacctgatcactgaa
ctgacggcgaatgaagaattggctgggactgatggtgccctggtcaatgatgaaggctgg
atcagaagtacagaagacgctgtggactactctgatatcaatgaggtagctgaggacgaa
agccgaagataccagcagacaatggggagcttacagcccctttaccacttaggaatcagg
cacatggcgtcacacatgcaaagcaagtactctactggttatgatgaagatgactatgat
gctgattgtgaagacattgattgcaagttgatgcctcctccacccccacctccaggacca
atgaagaaggataaggaccaggatgctattatcactgtgtctgaggatggagaaggcatc
atcttgccctccatcattgctccttcctctttggcctcagagaaagtggacttcagtagt
tcctctgactcagaatctgacatgggacctcaggaagcatcacagacagaatctgaagat
ggaaagctgaccctaccattggctgggattatgcagcatgatgccaccaagctgttgcca
agtgtcacagaacttttcccagaatttcggcctgggaaggtattgcgcttcctacgtctt
tttggaccaggcaagaatgtcccatcagtttggcggagtgctcggagaaaaagaaaaaag
aagcaccgtgagctgatacaggaagaacagacccaggaggtggaaagctcagtagactta
gaagttgaccagaagtctttgtggaactatgactatgctccaccaccacctccggagcag
tgtctttctgatgatgaaatcacaatgatggctcccttggagtccaagttttcccaatca
actggagatatagataaagtgacagatactaaaccaagagtggctgagtggcgttatggg
cctgctcgactatggtatgatatgctgggtgtctctgaagatggcagtgggtttgactat
ggcttcaaactaagaaagatggaacatgaacctgttataaaatgtagaacagtagaggac
ttaaagaaatttgaggaaggcagtggcgtggatcttctggctgatgaaaacttcctgatg
gtgacacagttgcattgggaagatgatatcatctgggatggagaggatgtcaaacacaag
gggacaaaacctcaacgtgcaagcctcgcaggctggcttccttccagtatgacgaggaat
gccatggcttataatgtgcagcaaggtttcgcagccactttggatgatgacaagccttgg
tattccattttccccattgacaatgaggagctagtatatggacgctgggaggacaatatc
atttgggatgcccaggccatgccccgactgttggagcctcctattttgacacttgatccc
aatgatgaaaaccttattttggaaatacctgatgagaaggaagaggctgcttctaactcc
ccctccaaggagaataagaaggagtcatctctgaaaaagagtcggattctcttagggaaa
acaggagtcatcaaggaagaaccacagcagaacatgtctcagccagaagtgaaagatcca
tggaatctctctaatgatgagtattactaccctaagcaacagggtcttcgaggcaccttt
ggaggaaatattatccagcattcaattcctgctgtggaattacggcagcccttctttccc
acccatatgggacctatcaaactccgacagttccatcgtccacctctgaaaaagtattcc
tttggggcactgtctcagccaggtcctcactcagtccaacccttattaaagcacatcaaa
aaaaaggccaagatgagagaacaagagagacaagcttcaggtggtggagagatgttcttt
atgcgcacacctcaggatctcactggcaaagatggagacctaattcttgcagagtacagt
gaggagaatgggccattaatgatgcaggttggcatggcaacaaagattaaaaactactat
aagaggaaacctggaaaagatccaggagcaccagattgtaagtatggagaaactgtttac
tgccatacatctcctttcctgggctctcttcatcctggacagttattgcaggcatttgaa
aacaacctttttcgtgccccaatttatcttcacaagatgccagaaacagactttcttatc
attcgaacaaggcaaggttactatattcgggaattagtggatatttttgtggttggtcag
cagtgccccttgtttgaagttccagggcccaactccaaaagggcgaatacacatattcga
gactttcttcaggtttttatttaccgtctcttctggaagagtaaagatcgaccacggcgg
atacgaatggaagatattaaaaaagcctttccttcacattctgaaagcagcatccggaag
agattaaagctctgtgctgacttcaaacgcacaggaatggactcaaattggtgggtgctg
aagtctgattttcgcttgccaactgaagaggaaatcagggctatggtgtctccagagcaa
tgctgtgcttattatagcatgatagctgcagagcagcgactgaaggatgctggctatggt
gagaagtccttttttgctccagaagaagaaaatgaggaagatttccagatgaagatagat
gatgaggttcgtactgctccttggaataccacaagggccttcattgctgccatgaagggc
aaatgtctcttggaggtgactggggtagcagatcccaccgggtgtggtgaagggttctcg
tatgtgaagattccaaacaaaccaacacaacagaaggatgataaagagcctcagccagtg
aagaagacagtaacgggaactgatgcagaccttcgtcgcctttcactgaaaaatgccaag
caacttcttcggaaatttggtgtgcctgaggaagagattaaaaagttgtcccgctgggaa
gtgattgatgtagtacggacaatgtcaacagaacaggcccgctctggagaggggcccatg
agtaaatttgcccgtggatcaagattttctgtggctgagcatcaagagcgttacaaagag
gaatgccagcgcatctttgaccttcagaacaaggttttgtcatccactgaagtcttatca
actgacacagacagcagctcagctgaagacagcgactttgaagaaatgggaaagaacatt
gagaacatgttacagaataagaaaaccagctctcagctgtcacgtgaacgggaagaacag
gagcggaaggaactacagaggatgctgttggcagcgggctcagcatcagcaggcaataat
cacagagatgatgacacagcttctgtaaatagccttaactcttctgccactggccggtgt
ctcaagatttaccgtacatttcgagatgaagaggggaaagagtatgttcgctgtgagaca
gttcgaaagccagctgtcattgatgcctatgtgcgcatacggaccacaaaagatgaggaa
ttcattcgtaaattcgccctttttgatgaacaacatcgtgaggagatgcgaaaagaacgg
cggaggattcaagagcaactgaggcggcttaagcggaaccaggaaaaagagaaacttaag
ggtcctcctgagaagaaaccgaaaaaaatgaaggagcgtcctgatctaaaactgaaatgt
ggagcttgtggtgccattgggcatatgaggacaaacaaattctgtcccctctattatcaa
acaaatgctccaccatccaaccctgttgccatgaccgaggagcaggaggaggagttggaa
aagacagtcattcataatgataatgaagagcttatcaaggttgaagggaccaaaattgtc
ttggggaaacagctcattgagagtgcagatgaggttcgtagaaaatctctggttctcaag
ttccctaaacagcaacttcctcccaagaagaaacgtcgagttggaaccactgttcactgt
gactatttgaatagacctcataagtctatccaccggcgccggacagatcccatggtgaca
ctgtcatccattttggagtctatcatcaatgacatgagagatcttccaaatacatatcct
ttccacacgccggtcaatgcaaaggttgtaaaggactactacaaaatcatcactcggcca
atggacttgcaaacactccgagaaaatgtgcggaaacgcctttatccatctcgggaagag
ttcagagagcatttggaattaattgtgaaaaatagcgcaacctataatggcccgaagcac
tcattaacacagatctctcaatccatgctggatctctgtgatgaaaaactcaaagagaaa
gaagataaattggctcgtttggagaaagctatcaaccccttattggatgatgatgaccaa
gtggcattttctttcattctagacaacattgtgacccagaaaatgatggcagttccagat
tcatggccatttcatcacccagttaataagaagtttgttccagattattataaagtgatt
gtcagtccaatggatttagagactatacgtaagaatatctccaagcacaagtatcagagt
cgggagagcttcctagatgatgtcaatttaattctagcgaatagtgttaaatataatgga
cctgagagtcagtatactaagactgctcaggaaattgtgaatgtctgttaccagacattg
actgagtatgatgaacatttgactcaacttgagaaggatatttgtacagctaaagaagca
gctttggaagaagcagaattagaaagcttggacccaatgaccccagggccctatacacct
cagcctcctgatttatatgataacaacacatccctcagtgtgtctcgtgatgcctctgta
ttccaagatgagagcaatatgtctgtcctagatattcctgctgcctctccagaaaaacca
gtgatacaggaaggtgaagatgcagatggtgatctagcagatgaagaaggaactgtgcaa
caaactcaagccagtgtcctatatgaggatttgcttatgtctgaaggagaagatgatgag
gaagatgctggaagtgatgaagaaggagataatcctttttctgcaatccagctgagtgaa
agtggaagtgactctgatgtgggatctggtggaataagatccaagctgccacgcatgctt
caggagaacacaaggatgggcatggaaaatgaagaaagcatgatgtcctatgagggagac
ggtggggaggcttcccatggtttggaggatagcaatatcagttatgggagctatgaggag
cctgatcccaagtcgaacacccaagacacaagcttcagcagcatcggtgggtatgaggta
tcagaggaggaagacgatgaggaggaagagcagcgctctgggccgagcgtactaagccag
gtccatctgtcagaggacgaggaggacagtgaggatttccactccattgctggggacagt
gagttggactctgatgaatga
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integrated database retrieval system
