KEGG   Shigella flexneri 8401 (serotype 5b): SFV_1146
Entry
SFV_1146          CDS       T00377                                 
Symbol
ycfD
Name
(GenBank) conserved hypothetical protein
  KO
K18850  50S ribosomal protein L16 3-hydroxylase [EC:1.14.11.47]
Organism
sfv  Shigella flexneri 8401 (serotype 5b)
Brite
KEGG Orthology (KO) [BR:sfv00001]
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03009 Ribosome biogenesis [BR:sfv03009]
    SFV_1146 (ycfD)
Enzymes [BR:sfv01000]
 1. Oxidoreductases
  1.14  Acting on paired donors, with incorporation or reduction of molecular oxygen
   1.14.11  With 2-oxoglutarate as one donor, and incorporation of one atom of oxygen into each donor
    1.14.11.47  [50S ribosomal protein L16]-arginine 3-hydroxylase
     SFV_1146 (ycfD)
Ribosome biogenesis [BR:sfv03009]
 Prokaryotic type
  ribosomal protein modification factors
   SFV_1146 (ycfD)
SSDB
Motif
Pfam: JmjC_2 WHD_ROXA Cupin_1 Cupin_2 AraC_binding TonB_dep_Rec_b-barrel Tup_N
Other DBs
NCBI-ProteinID: ABF03355
UniProt: Q0T5R0
LinkDB
Position
complement(1191654..1192784)
AA seq 376 aa
MLNMEYQLTLNWPDFLERHWQKRPVVLKRGFNNFIDPISPDELAGLAMESEVDSRLVSHQ
DGKWQVSHGPFESYDHLGETNWSLLVQAVNHWHEPTAALMRPFRELPDWRIDDLMISFSV
PGGGVGPHLDQYDVFIIQGTGRRRWRVGEKLQMKQHWPHPDLLQVDPFEAIIDEELEPGD
ILYIPPGFPHEGYALENAMNYSEGFRAPNTRELISGFADYVLQRELGGNYYSDPDVPPRA
HPADVLPQEMDKLREMMLELINQPEHFKQWFGEFISQSRHELDIAPPEPPYQPDEIYDAL
KQGDVLVRLGGLRVLRIGDDVYANGEKIDSPHRPALDALASNIALTAENFGDALEDPSFL
AMLAALVNSGYWFFEG
NT seq 1131 nt   +upstreamnt  +downstreamnt
atgcttaacatggaataccaactcactcttaactggcccgattttcttgaacgtcactgg
cagaaacgcccggtggtgttaaaacgcggctttaataattttattgacccgatctctcca
gacgagttggcgggtctggcgatggaaagcgaagttgacagtcgactggtcagtcaccag
gatggcaaatggcaggtcagccacggcccgttcgaaagctacgatcatctcggtgaaacc
aactggtcattactggtacaggcagtaaaccactggcatgagccgaccgccgcgctgatg
cgaccgttccgtgaactaccggactggcgtattgatgatctgatgatttctttttctgta
cctggcggcggcgtcggcccgcatctcgatcagtacgacgtgtttatcattcagggtacc
ggacgtcgtcgctggcgagtgggcgaaaagctgcaaatgaaacagcactggccacatccg
gatctgttacaggtcgatccgttcgaagccatcatcgatgaagagctggagcctggtgat
attctttatattccgccaggattcccgcatgaaggctacgcgctggaaaatgcgatgaac
tattccgagggttttcgcgcgccaaatacgcgggaattaattagcggatttgccgattat
gtgctgcaacgtgaactgggcggcaactactacagcgatccggatgttccacctcgtgct
catcctgcggatgttctgccgcaagagatggataaactgcgtgagatgatgctcgaattg
atcaaccagccggaacactttaagcaatggtttggcgagtttatatcccagtcacgtcat
gaactggatatcgcgccgccggaaccgccttatcagccagatgaaatctacgatgcgctg
aaacaaggtgatgtgctggtgcgcctgggtggtctgcgcgtattgcgcattggcgacgac
gtgtatgccaatggtgagaagatcgattccccgcaccgtccggcactggatgcactcgcc
agcaacattgcgctgactgcggagaattttggcgatgcgctggaagatccgtcattcctc
gcgatgctcgcggcgctggtcaatagcgggtattggttcttcgaagggtaa

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