Streptococcus gallolyticus UCN34: GALLO_0084
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Entry
GALLO_0084 CDS
T01171
Symbol
rpoB
Name
(GenBank) RNA polymerase (beta subunit)
KO
K03043
DNA-directed RNA polymerase subunit beta [EC:
2.7.7.6
]
Organism
sga
Streptococcus gallolyticus UCN34
Pathway
sga03020
RNA polymerase
Brite
KEGG Orthology (KO) [BR:
sga00001
]
09120 Genetic Information Processing
09121 Transcription
03020 RNA polymerase
GALLO_0084 (rpoB)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
sga03021
]
GALLO_0084 (rpoB)
03400 DNA repair and recombination proteins [BR:
sga03400
]
GALLO_0084 (rpoB)
Enzymes [BR:
sga01000
]
2. Transferases
2.7 Transferring phosphorus-containing groups
2.7.7 Nucleotidyltransferases
2.7.7.6 DNA-directed RNA polymerase
GALLO_0084 (rpoB)
Transcription machinery [BR:
sga03021
]
Prokaryotic type
Bacterial type
RNA polymerase
Core subunits
GALLO_0084 (rpoB)
DNA repair and recombination proteins [BR:
sga03400
]
Prokaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TCR (transcription coupled repair) factors
DNA-directed RNA polymerase complex (RNAP)
GALLO_0084 (rpoB)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNA_pol_Rpb2_6
RNA_pol_Rpb2_2
RNA_pol_Rpb2_3
RNA_pol_Rpb2_7
RNA_pol_Rpb2_1
RNA_pol_Rpb2_45
Peptidase_M23
NusG_add
Motif
Other DBs
NCBI-ProteinID:
CBI12576
UniProt:
A0AA36JVW6
LinkDB
All DBs
Position
92935..96507
Genome browser
AA seq
1190 aa
AA seq
DB search
MAGHEVQYGKHRTRRSFSRIKEVLDLPNLIEIQTDSFKDFLDNGLREVFEDVLPITNFTD
TMELEFVGYELKEPKYTLEEARIHDASYSAPIFVTFRLINKETGEIKTQEVFFGDFPIMT
EMGTFIINGGERIIVSQLVRSPGVYFNDKVDKNGKVGYGSTVIPNRGAWLELETDSKDIA
YTRIDRTRKIPFTTLVRALGFSGDDEIMDIFGDSELVRNTIEKDIHKNPADSRTDEALKE
IYERLRPGEPKTADSSRSLLVARFFDPRRYDLAAVGRYKINKKLNVKTRLLNQTIAENLV
DAETGEILVEAGTVMTRDVIDSIAEQLDGDLNKFVYTPNDYAVVTEPVVLQKFKVVSPVD
PNRVVTIVGNANPDDKARALTPADILAEMSYFLNLAEGLGKVDDIDHLGNRRIRAVGELL
ANQFRIGLARMERNVRERMSVQDNEVLTPQQIINIRPVTAAVKEFFGSSQLSQFMDQHNP
LSELSHKRRLSALGPGGLTRDRAGYEVRDVHYTHYGRMCPIETPEGPNIGLINNLSTYGH
LNKYGFIQTPYRKVDRATGVVTNEIVWLTADEEDEYTVAQANSKLNEDGTFAEEIVMGRH
QGNNQEFPSNIVDFVDVSPKQVVAVATACIPFLENDDSNRALMGANMQRQAVPLIDPHAP
YVGTGMEYQAAHDSGAAVIAKHDGRVVFSDAEKVEVRREDGSLDVYHITKFRRSNSGTAY
NQRTLVKVGDIVEKGDFIADGPSMEKGEMALGQNPIVAYMTWDGYNYEDAVIMSERLVKE
DVYTSVHLEEFESETRDTKLGPEEITREIPNVGEEALKDLDEMGIIRIGAEVKEGDILVG
KVTPKGEKDLSAEERLLHAIFGDKSREVRDTSLRVPHGGDGVVRDVKIFTRANGDELQSG
VNMLVRVYIAQKRKIKVGDKMAGRHGNKGVVSRIVPVEDMPYLPDGTPVDIMLNPLGVPS
RMNIGQVMELHLGMAARNLGIHIATPVFDGATSEDLWDTVREAGMDSDAKTVLYDGRTGE
PFDNRVSVGIMYMIKLHHMVDDKLHARSVGPYSLVTQQPLGGKAQFGGQRFGEMEVWALE
AYGASNVLQEILTYKSDDVTGRLKAYEAITKGKPIPKPGVPESFRVLVKELQSLGLDMRV
LDEDDNEVELRDLDEGEDDDVMHVDDLEKARQKQETESAEKVEVSAEENK
NT seq
3573 nt
NT seq
+upstream
nt +downstream
nt
ttggcaggacatgaagttcagtacgggaaacaccgtacacgtcgtagcttttcaagaatc
aaggaagttcttgatttacctaacttgattgaaattcaaacggattcttttaaagacttc
ttggataatggattgagagaagtttttgaagatgtacttccgattacaaactttacggat
actatggagcttgaatttgttggttacgaattaaaagagcctaaatatacgcttgaagaa
gctcgtatccacgatgcatcttattcagcacctatttttgtaaccttccgtttgattaat
aaagaaacaggagaaatcaaaactcaagaagttttcttcggtgatttcccaatcatgacc
gaaatgggtacattcatcatcaatggtggtgaacgtattatcgtttctcagttggttcgt
tctcctggtgtttatttcaacgataaagttgataaaaacggtaaagttggttacggttca
actgtaattcctaaccgtggagcttggcttgaattagaaacagattcaaaagacattgct
tacacacgtattgaccgtacacgtaaaattccatttacaacacttgtacgtgcgcttggt
ttctcaggtgatgatgaaatcatggatatctttggtgatagcgagctcgttcgtaatact
attgaaaaagatattcacaaaaatccagcagattcacgtactgacgaagcacttaaagaa
atttacgaacgccttcgtccaggtgaaccaaaaacagctgatagctcacgtagtttgctt
gtagctcgtttctttgacccacgtcgttatgacttggcagctgttggacgttacaaaatc
aataaaaaacttaacgtcaagactcgtctcttgaaccaaaccattgctgaaaacttggtt
gatgctgaaactggtgaaatccttgttgaagctggtaccgtaatgacacgtgacgtgatt
gattcaattgctgaacaattagacggtgaccttaacaaatttgtttacacaccaaatgat
tacgctgttgtcactgaacctgttgttcttcaaaaattcaaagttgtgtcaccagttgac
ccaaaccgcgttgttacaatcgtaggtaatgccaatcctgatgataaagcgcgtgcgctt
acaccagcagacatcttggctgaaatgtcatacttccttaatcttgctgaaggtcttggt
aaagttgacgatatcgaccaccttggtaaccgtcgtattcgtgccgttggtgaattgctt
gctaaccaattccgtattggtcttgctcgtatggaacgtaatgttcgtgaacgtatgtca
gttcaagacaatgaagtgttgacaccacaacaaatcatcaacattcgtcctgtaactgcg
gctgttaaagaatttttcggttcttctcaattgtcacagttcatggaccaacacaaccca
ctttctgaattgtctcacaaacgtcgtttgtcagccttaggacctggtggtttgactcgt
gaccgtgctggttatgaagttcgtgacgtgcactacactcactatggtcgtatgtgtccg
attgaaactcctgaaggacctaacatcggtttgattaataacttgtcaacatacggacat
cttaataaatatggtttcatccaaacaccatatcgtaaagttgaccgtgctactggtgtg
gttacaaacgaaattgtttggttgactgccgatgaagaagatgaatacacagtagcgcaa
gctaactcaaaacttaacgaagatggaacattcgctgaagaaatcgttatgggacgtcat
caaggtaataaccaagaattcccatcaaacatcgttgacttcgtagatgtttctcctaaa
caagtagttgccgttgcgacagcatgtattcctttccttgaaaatgatgactcaaaccgt
gcccttatgggtgccaacatgcaacgtcaagcggtgccattgattgacccacatgcacca
tatgttggtactggtatggaatatcaagcagctcacgattctggtgccgctgttatcgct
aaacacgatggacgcgtagttttctcagatgctgaaaaagttgaagttcgtcgtgaagat
ggttcacttgatgtttaccacattactaaattccgtcgttcaaactcaggtacagcatac
aatcaacgtacacttgttaaagttggtgatattgttgaaaaaggtgacttcattgctgac
ggaccttctatggaaaaaggtgaaatggcacttggtcaaaacccaatcgttgcctacatg
acatgggatggttacaactatgaagatgccgttatcatgagcgaacgtcttgttaaagaa
gatgtttacacatcagttcacttggaagaatttgaatcagaaacacgtgatactaagtta
ggccctgaagaaatcactcgcgaaattccaaacgttggtgaagaagctcttaaagacctt
gacgaaatgggtattatccgtatcggtgctgaagttaaagaaggtgatatccttgtaggt
aaagtaacacctaaaggtgaaaaagacctttctgctgaagaacgccttcttcacgcaatc
ttcggtgataaatctcgtgaagtacgtgatacatcacttcgtgtgccacacggtggagac
ggtgttgttcgtgatgttaaaatcttcacacgtgctaacggtgatgaattgcaatcaggt
gtcaacatgctcgttcgtgtttacattgcacaaaaacgtaaaatcaaagtcggagataaa
atggccggtcgtcacggaaacaaaggggttgtttctcgtatcgttcctgttgaagacatg
ccatatcttccagacggaactccagttgatatcatgttgaaccctcttggggtgccatct
cgtatgaatatcggacaagttatggaacttcaccttggtatggcagctcgtaacctcggt
attcacattgcaactccagtctttgacggggcaacttcagaagacctttgggatactgtt
cgtgaagctggtatggatagcgacgctaagacagttctttatgacggtcgtacaggtgaa
ccatttgataatcgtgtctctgttggtatcatgtacatgatcaaacttcaccacatggtt
gatgataaacttcacgctcgttcagttggtccttactcacttgttacacaacaacctctt
ggtggtaaagcacaatttggtggacaacgtttcggtgaaatggaagtttgggctttggaa
gcttatggtgcatcaaatgtccttcaagaaatcttgacatacaagtcagatgatgtgact
ggacgtcttaaagcttatgaagctatcactaaaggtaaaccaattccaaaaccaggtgta
ccagaatcattccgagtgcttgttaaagaattgcaatcacttggtcttgatatgcgtgtg
cttgatgaagatgacaacgaagtagaacttcgtgatcttgatgaaggtgaagacgacgat
gttatgcacgttgatgaccttgaaaaagctcgtcaaaaacaagaaactgaatctgctgaa
aaagtagaagtttctgctgaagaaaataaataa
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integrated database retrieval system
