Streptomyces globisporus: WQO_24475
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Entry
WQO_24475 CDS
T04209
Name
(GenBank) ATP-dependent DNA ligase
KO
K01971
bifunctional non-homologous end joining protein LigD [EC:
6.5.1.1
]
Organism
sgb
Streptomyces globisporus
Pathway
sgb03450
Non-homologous end-joining
Brite
KEGG Orthology (KO) [BR:
sgb00001
]
09120 Genetic Information Processing
09124 Replication and repair
03450 Non-homologous end-joining
WQO_24475
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
sgb03400
]
WQO_24475
Enzymes [BR:
sgb01000
]
6. Ligases
6.5 Forming phosphoric-ester bonds
6.5.1 Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
6.5.1.1 DNA ligase (ATP)
WQO_24475
DNA repair and recombination proteins [BR:
sgb03400
]
Prokaryotic type
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
Two-component NHEJ DNA repair complex
WQO_24475
BRITE hierarchy
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Paralog
Gene cluster
GFIT
Motif
Pfam:
LigD_Prim-Pol
DNA_primase_S
Motif
Other DBs
NCBI-ProteinID:
ALU96197
UniProt:
A0A0U3C349
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All DBs
Position
complement(5518463..5519353)
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AA seq
296 aa
AA seq
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MTPITEVEGRRVSLSNLDKVLYPATGTTKGEVLHYYAATVGSVILPHLADRPVSFLRYPD
GPGGQLFFTKNPPPGTPAWVETAPVPRSEDQGARQVVVRDLASLMWAANLVVEFHTPQWR
TGAPGVADRMVFDLDPGPPATVVECCAVALWLRERLADDGLAAYGKTSGSKGLHLLVPLE
PTPSGEVSAYAKRLAMEAEEALPALALHRMKRALRPGKVFVDFSQNSASKTTATPYTLRA
RPEPTVSAPVTWDEITGCREAGALVFRAGDMAARLDRHGDLLAPLNDPERAHPLPA
NT seq
891 nt
NT seq
+upstream
nt +downstream
nt
atgacgccgatcaccgaggtggaggggcgacgggtctcgctcagcaatctcgacaaggtc
ctgtatccggccacgggaacgaccaagggcgaggtgctgcactactacgcggccaccgtg
ggcagcgtgatcctgccccacctggccgaccgccccgtgtccttcctgcggtatccggac
gggccgggcggccagctcttcttcaccaagaatccgccaccgggtacacccgcctgggtg
gagacggccccggtcccccggagcgaggaccagggggcgcgacaggtggtcgtgcgcgat
ctggcctcgttgatgtgggcggcgaacctggtggtggagttccacaccccgcagtggcgc
acgggggcgccgggggtcgccgaccggatggtcttcgacctggaccccggcccccccgcg
accgtcgtggagtgctgcgcggtggcgctctggctgcgggagcggctcgcggacgacggg
ctggcggcgtacgggaagacgtccgggtccaaggggctgcatctgctggttccgctggag
cccacgccgtccggcgaggtgtccgcgtacgcgaagcggctcgccatggaggcggaggag
gccctgccggctcttgccctgcaccggatgaagcgcgccctgcggccgggcaaggtgttc
gtcgacttcagccagaactccgcgtcgaagacgaccgccacgccctacaccctgcgcgcc
cggcccgagcccaccgtctcggcccccgtcacctgggacgagatcacggggtgccgggag
gccggggccctggtgttccgcgccggggacatggccgcccggctggaccggcacggcgat
ctgctcgccccgctgaacgacccggaacgggcgcatccgctgcccgcgtga
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