Stenotrophomonas geniculata: RKE57_03615
Help
Entry
RKE57_03615 CDS
T09411
Symbol
rpoB
Name
(GenBank) DNA-directed RNA polymerase subunit beta
KO
K03043
DNA-directed RNA polymerase subunit beta [EC:
2.7.7.6
]
Organism
sgen
Stenotrophomonas geniculata
Pathway
sgen03020
RNA polymerase
Brite
KEGG Orthology (KO) [BR:
sgen00001
]
09120 Genetic Information Processing
09121 Transcription
03020 RNA polymerase
RKE57_03615 (rpoB)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
sgen03021
]
RKE57_03615 (rpoB)
03400 DNA repair and recombination proteins [BR:
sgen03400
]
RKE57_03615 (rpoB)
Enzymes [BR:
sgen01000
]
2. Transferases
2.7 Transferring phosphorus-containing groups
2.7.7 Nucleotidyltransferases
2.7.7.6 DNA-directed RNA polymerase
RKE57_03615 (rpoB)
Transcription machinery [BR:
sgen03021
]
Prokaryotic type
Bacterial type
RNA polymerase
Core subunits
RKE57_03615 (rpoB)
DNA repair and recombination proteins [BR:
sgen03400
]
Prokaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TCR (transcription coupled repair) factors
DNA-directed RNA polymerase complex (RNAP)
RKE57_03615 (rpoB)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNA_pol_Rpb2_6
RNA_pol_Rpb2_1
RNA_pol_Rpb2_3
RNA_pol_Rpb2_7
RNA_pol_Rpb2_2
RNA_pol_Rpb2_45
PrmC_N
Motif
Other DBs
NCBI-ProteinID:
WNF11243
LinkDB
All DBs
Position
788246..792400
Genome browser
AA seq
1384 aa
AA seq
DB search
MTSYSFTEKKRIRKDFGKQRSILEVPFLLAIQVDSYREFLQENVDPAKRTDHGLHAALKS
VFPIASYSGNAALEYVGYKLGEPVFDERECRQRGMSYGAPLRVTVRLVIYDRESSTKAIK
YVKEQEVYLGEIPLMTENGTFIVNGTERVIVSQLHRSPGVFFDHDRGKTHSSGKLLYSAR
IIPYRGSWLDFEFDPKDALFTRIDRRRKLPVSILLRALGYSNEEMLAEFFEINTFHINPD
EGVQLELVPERLRGETLGFDLADGDKVIVEAGKRITARHIKQLEASGIAALAVPDDYIVG
RILSHDVVDASTGELLAQANDEITDEQLQAFRKAGVDAVGTLWVNDLDRGPYLSNTLRID
PTKTQLEALVEIYRMMRPGEPPTKDAAQNLFHNLFFTFERYDLSAVGRMKFNRRVGRKET
TGEAVLYDRKYYGERNDEESKRLVAAHGDSSDILDVIKVLTEIRNGRGVVDDIDHLGNRR
VRSVGEMAENVFRVGLVRVERAVKERLSMAESEGLTPQELINAKPVAAAIKEFFGSSQLS
QFMDQNNPLSEVTHKRRVSALGPGGLTRERAGFEVRDVHPTHYGRVCTIETPEGPNIGLI
NSLAVYARTNQYGFLETPYRKVVDGKVYDEVEFLSAIEENEYVIAQANALTNADSMLTEQ
FVPCRFQGESLLKPPAEVHFMDVSPMQTVSIAAALVPFLEHDDANRALMGANMQRQAVPT
LRAQKPLVGTGIERAVARDSGVTVNARRGGEIVQIDAARIVVKVNEEEIVGATDAGVDIY
NLVKYTRSNQNTCINQRPLVQVGDVIARGDVLADGPSTDIGELALGQNMLIAFMPWNGYN
FEDSILLSERVVEEDRYTTIHIEELTCVARDTKLGPEEISADIPNVSEQALNRLDESGVV
YIGAEVRAGDIMVGKVTPKGESQLTPEEKLLRAIFGEKASDVKDSSLRVPPGMDGTVIDV
QVFTRDGIEKDKRARQIEESEIKRVKKDFDDQFRILEAAIYMRLRSQIVGKVVNGGAGLK
KGDVISDAFLDGLKKADWFALRMKDEDASEAIERAQKQIQAHEKEFERRFADKRGKITAG
DDLAPGVLKMVKVFLAVKRRIQPGDKMAGRHGNKGVVSNVVPVEDMPYMASGETVDIVLN
PLGVPSRMNIGQILEVHLGWAAKGLGRKIQAMMEAQAAVADLRKFLDDIYNHDDTNVANR
VDLSQFSDEELLRLARNLTDGVPMATPVFDGATEAEIKRMLELADLPSSGQTQLYDGRTG
EAFDRHTTVGYMHYLKLNHLVDDKMHARSTGPYSLVTQQPLGGKAQFGGQRFGEMEVWAL
EAYGAAYTLQEMLTVKSDDVQGRNQMYKNIVDGEHEMVAGMPESFNVLVKEIRSLAINME
LEDN
NT seq
4155 nt
NT seq
+upstream
nt +downstream
nt
atgacgtcctattcgttcaccgaaaaaaagcgtatccgcaaggatttcggcaagcagcgc
tcgattctcgaagtgccgttcctgctcgccatccaggtggattcctatcgtgaattcctg
caggaaaacgtcgatccggccaagcgcacggaccacggcctgcacgctgcgctgaagtcg
gtcttcccgatcgccagctacagcggcaatgccgccctggaatacgtcggctacaagctg
ggcgaaccggtcttcgacgagcgtgagtgccgccagcgtggcatgagctacggcgccccg
ctgcgcgtgaccgtgcgcctggtgatctacgaccgtgagtcgtcgaccaaggccatcaag
tacgtgaaggagcaggaggtctatctgggcgaaatcccgctgatgaccgagaacggcacc
ttcatcgtcaacggcaccgagcgcgtcatcgtctcgcagctgcaccgctcgccgggtgtg
ttcttcgaccacgaccgtggcaagacccacagctcgggcaagctgctgtacagcgcccgc
atcattccttaccgcggttcctggctggacttcgagttcgacccgaaggacgcgctgttc
acccgtatcgaccgccgccgcaagctgccggtgtcgatcctgctgcgcgcgcttggctac
agcaacgaagagatgctggccgagttcttcgagatcaacaccttccacatcaacccggat
gaaggcgtccagctggagctggtgccggagcgcctgcgtggcgaaaccctgggctttgac
ctcgccgacggcgacaaggtcatcgtggaagccggcaagcgcatcaccgcgcgccacatc
aagcagctggaagcctcgggcatcgccgccctggccgtgccggacgactacatcgtcggc
cgcatcctgtcgcacgacgtggtcgacgcctcgaccggcgaactgctggcccaggccaat
gacgagatcaccgacgagcagctgcaggccttccgcaaggctggcgtggatgccgtgggc
accctgtgggtgaacgatctggatcgtggcccgtacctgtccaacaccctgcgcatcgac
ccgaccaagacccagctggaagccctggtcgagatctaccgcatgatgcgtccgggcgag
ccgccgaccaaggatgccgcgcagaacctgttccacaacctgttcttcaccttcgagcgc
tacgacctgtccgcggtcggccgcatgaagttcaaccgtcgcgtgggccgcaaggaaacc
accggcgaagccgtgctgtacgaccgcaagtactacggtgagcgcaacgacgaagagtcc
aagcgcctggtcgccgcccatggcgacagctccgacatcctggacgtgatcaaggtcctg
accgagatccgcaacggtcgcggcgtggtcgacgatatcgaccacctgggcaaccgtcgc
gtgcgttcggtcggtgaaatggccgagaacgtgttccgcgtgggcctggtccgcgtcgag
cgcgcggtcaaggagcgcctgtcgatggccgagtcggaaggcctgaccccgcaggaactg
atcaacgccaagccggtcgccgctgccatcaaggagttcttcggctcctcgcagctgtcg
cagttcatggaccagaacaacccgctgtcggaagtgacccacaagcgtcgcgtctcggcc
ctgggcccgggcggcctgacccgtgagcgcgccggcttcgaagtgcgtgacgtgcacccg
acccattacggccgcgtctgcaccatcgaaaccccggaaggcccgaacatcggcctgatc
aactcgctggccgtgtacgcccgcaccaaccagtacggtttccttgagaccccgtaccgc
aaggtcgtggacggcaaggtctatgacgaagtcgagttcctgtcggcgatcgaagaaaac
gagtacgtcattgcgcaggccaacgccctgaccaatgccgacagcatgctgaccgagcag
ttcgttccgtgccgcttccagggcgaatcgctgctgaagccgccggcagaagtccacttc
atggacgtctcgccgatgcagaccgtgtcgatcgcggccgcgctggttccgttcctggag
cacgatgacgccaaccgcgcactgatgggcgccaacatgcagcgtcaggccgtgccgacc
ctgcgtgcgcagaagccgctggtcggtaccggtatcgaacgcgccgtggcgcgtgactcc
ggtgtgaccgtgaacgcccgtcgtggtggcgagatcgtgcagatcgacgccgcccgcatc
gtggtcaaggtcaacgaggaagagatcgttggcgccaccgacgcaggcgtggacatctac
aacctggtcaagtacacccgttcgaaccagaacacctgcatcaaccagcgtccgctggtc
caggtgggtgacgtcatcgcccgcggcgacgtgctggccgacggtccgtccaccgacatc
ggcgaactggccctgggccagaacatgctgatcgcgttcatgccgtggaacggctacaac
ttcgaagactccatcctgctctccgagcgcgtggtggaagaggatcgttacaccacgatc
cacatcgaagagctgacctgcgttgcgcgtgacaccaagctggggccggaggaaatctcc
gccgacatcccgaacgtctccgagcaggcgctgaaccgcctggacgagagcggcgtggtg
tacatcggtgccgaagtccgcgccggcgacatcatggtcggcaaggtcaccccgaagggc
gaaagccagctgaccccggaagagaagctgctgcgcgcgatcttcggcgagaaggcttcg
gacgttaaggacagctcgctgcgcgttccgccgggcatggacggcaccgtcatcgacgtg
caggtcttcacccgcgacggcatcgagaaggacaagcgcgcccgccagatcgaagagtct
gaaatcaagcgcgtcaagaaggacttcgacgaccagttccgcatcctggaagccgccatc
tacatgcgtctgcgttcgcagatcgtgggcaaggtggtcaacggtggcgctggcctgaag
aagggtgacgtgatcagcgacgccttcctggacggcctgaagaaggctgactggttcgcc
ctgcgcatgaaggacgaggacgcttcggaagccatcgagcgcgcgcagaagcagatccag
gcgcacgagaaggagttcgagcgtcgcttcgccgacaagcgcggcaagatcaccgccggt
gacgacctcgccccgggcgtgctgaagatggtcaaggtattcctggccgtgaagcgccgc
atccagccgggcgacaagatggcaggccgccacggcaacaagggtgtggtctccaacgtg
gtgccggtcgaggacatgccgtacatggcctcgggcgaaaccgtggacatcgtgctgaac
ccgctgggcgttccgtcgcgtatgaacatcggccagatcctggaagtgcacctgggctgg
gccgccaagggcctgggccgcaagatccaggcgatgatggaggcccaggccgccgttgcc
gacctgcgcaagttcctggatgacatctacaaccacgacgacaccaacgtggccaaccgt
gtcgacctgtcgcagttcagcgacgaggaactgctgcgtctggcccgcaacctgaccgac
ggcgtgccgatggccactccggtgttcgacggcgccaccgaagcggaaatcaagcgcatg
ctggaactggccgacctgccgagcagtggccagacccagctgtacgacggccgcaccggt
gaagcgttcgatcgccacaccaccgtgggttacatgcactacctgaagctgaaccacctg
gtcgacgacaagatgcacgcccgttcgaccggtccgtactcgctcgtcacccagcagccg
ctgggcggcaaggcgcagttcggcggccagcgcttcggtgaaatggaagtctgggcgctg
gaagcctacggcgcggcctacaccctgcaggaaatgctgacggtgaagtccgatgacgtg
cagggccgcaaccagatgtacaagaacatcgtcgacggtgagcacgagatggtcgcgggc
atgccggaatccttcaacgtgctcgtgaaggaaatccgctcgctggctatcaacatggaa
ctggaagacaactga
DBGET
integrated database retrieval system
