Sinocyclocheilus grahami (golden-line barbel): 107572701
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Entry
107572701 CDS
T04918
Name
(RefSeq) CCR4-NOT transcription complex subunit 1 isoform X1
KO
K12604
CCR4-NOT transcription complex subunit 1
Organism
sgh
Sinocyclocheilus grahami (golden-line barbel)
Pathway
sgh03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
sgh00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
107572701
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
sgh03019
]
107572701
Messenger RNA biogenesis [BR:
sgh03019
]
Eukaryotic type
mRNA surveillance and transport factors
mRNA cycle factors
P-body specific factors
107572701
mRNA degradation factors
3'-5' decay
Ccr4-NOT complex
107572701
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
Not1
CNOT1_CAF1_bind
NOT1_connector
ARM_Cnot1
CNOT1_TTP_bind
DUF3819
CNOT1_HEAT
CNOT1_1st
Motif
Other DBs
NCBI-GeneID:
107572701
NCBI-ProteinID:
XP_016114618
LinkDB
All DBs
Position
Unknown
AA seq
2378 aa
AA seq
DB search
MNLDSLSLALSQISYLVDNLTKKNYRASQQEIQHIVNRHGPEADRHLLRCLFSHVDFSGD
GKSSGKDFHQTQFLIQECVCLITKPNFISTLCYAIDNPLHYQKSLKPSPHLFTQLSKVLK
LSKVQEVIFGLALLNSSNADLRGFAAQFVKQKLPDLLRSYVDADLGGNQEGGFQDIAIEV
LHLLLSHLLFGQKGSSGVGQEQIDAFLKTLCRDFPQERCPVVLAPLLYPDKRDILMDRIL
PDSGELNKTMMESSLADFMQEVGYGFCASLEECRNIILQYGVREVTASQVARVLGMMART
HSGLSDGIGLQSISNPVGGGIWSDGKDKSDGSQAHTWTVEVLIDVVKEVNPNLNFKEVTY
ELDHPGFLIRDSKGLQIVVYGIQRGLGMEVFPVDLIYRPWKHAEGQLSFIQHSLMSPEVF
CFVDYPCHTVAIDILKAPPEDDNREIATWKSLDLVESLLRLSEVGHYEQVKQLFSFPIKH
CPDMLVLALLQISTSWHTLRHELISTLMPIFLGNHPNSAIILHYAWHGQGQSPSIRQLIM
HSMAEWYMRGEQYDQAKLSRILDVAQDLKSLSMLLNGTPFAFVIDLAALASRREYLKLDK
WLTDKIREHGEPFIQACVTFLKRRCPSIMGGLAPEKDQPKSAQLPPETLATMLACLQSCA
GSVSQELSETILTMVANCSNVMNKARQPPPGVLPKGRAPSTSSLDAISPVQMDPLSAMGS
LSLGVSSTTSHTPSMQGFPSLQGSAFSNPQSPAKAFSNLPNPNPSTAFPGINPLSSQLQG
PLSSSLTGIGSGLGMPAVSSDPFGTRKMSTPGLNPPTFQQTDLSQVWPEANQHFSKEIDD
EANSYFQRIYNHPPHPTMSVDEVLEMLQRFKDSNIKREREVFNCMLRNLFEEYRFFPQYP
DKELHITACLFGGIIEKGLVTYMALGLALRYVLEALRKPFGSKMYYFGIAALDRFKNRLK
DYPQYCQHLASIAHFLQFPHHLQEYIEYGQQSRDPPVKMQGSITTPGSLALAQAQAQSQT
PKAPLPGQASTLVTTATTTTTAAKTTTITRPTAVGPKKDVPPSINTTNIDTLLVATDQTE
RIVEPPENVQEKIAFIFNNLSQSNMSQKVEELKETVKEEFMPWVSQYLVMKRVSIEPNFH
SLYSNFLDTLKNPEFVKMVLNETYRNIKVLLTSDKAAANFSDRSLLKNLGHWLGMITLAK
NKPILYTDLELKSLLLEAYVKGQQELLYVVPFVAKVLESSLRSVIFRPQNPWTMGIMNVL
AELHQEHDLKLNLKFEIEVLCKNLSLDISELKPGNLLRDKDKLKNLEEQLSAPKKETKPP
EEMLPIVTTGVDSVPFTAAPSTPATTTTCTATGPPTPQFSYHDINVYALAGLAPHININI
NIPLLQAHPQLKQCVRPAIERAVQELVHPVVDRSIKIAMTTCEQIVRKDFALDSEESHMR
VAAHHMMRNLTAGMAMITCREPLLISIATNLKNSFAAALRAPTPQQREMMEEAAARIAQD
NCELACCFIQKTAVEKAGPEMDKRLATEFELRKHARQEGRRYCDPMVLTYQAERMPEQIR
LKVGGVDPKQLAVYEEFARNVPGFLPSNDLSQPTGFLAQPMKQQAWPTDDVAHIYDKCIS
DLEQHMHAIPPALAMNPQTQAIRSLLEAVVMARNSRDGIAALGLLQKAVEGLLDATSGAD
PDLLLSYRECHLLVLKALQDGRAYGPQWCNKQITRCLIECRDEYKYNVEAVELLIRNHLV
NMQQYDLHLAQSMENGLNYMAVAFAMQLVKLLLVDERSVSHITEADLFHTIETLMRTNAH
SRANAPEGLPQLMDVVRSNYEAMIDRHHGGPNFMMHSGISQASEYDDPPGLREKAEYLLR
EWVNLYHSAAAGRDSTKAFSAFVGQMHQQGILKTDDLITRFFRLCTEMCVEISYRAQAEQ
QHPTTSPAIIRAKCYHNLDAFVRLIALLVKHSGEATNTVTKINLLNKVLGIVVGVLIQDH
DVRQTEFQQLPYHRIFIMLLLELNAPEHVLETINFQTLTAFCNTFHILRPSKAPGFVYAW
LELISHRIFIARMLAHTPQQKGWPMYAQLLIDLFKYLAPFLRNVELNKPMQILYKGTLRV
LLVLLHDFPEFLCDYHYGFCDVIPPNCIQLRNLILSAFPRNMRLPDPFTPNLKVDMLSEI
NIAPRILTNFTGVMPSQFKKDLDSYLKTRSPVTFLSELRSNLQVSNEPGNRYNIQLINAL
VLYVGTQAIAHIHNKGSTPSMSTITHSAHMDIFQNLAVDLDTEGRYLFLNAIANQLRYPN
SHTHYFSCTMLYLFAEANAEAIQEQITRVLLERLIVNRPHPWGLLITFIELIKNPAFKFW
SHDFVHCAPEIEKLFQSVAQCCMGQKQAQQVMEGTGAS
NT seq
7137 nt
NT seq
+upstream
nt +downstream
nt
atgaatcttgactcgctctcgctggctttgtctcaaatcagctacctggtggacaattta
actaagaaaaactacagagccagccagcaggaaatacaacatattgtgaatcgtcacggc
cctgaggcagaccggcatttattacgctgtctcttttcccatgtggatttcagtggcgat
ggtaaaagcagtggcaaagatttccaccagacacaatttctgatccaggagtgtgtgtgt
cttattacgaaaccaaattttatttcaacgctttgctacgccattgacaatcccctgcac
tatcaaaagagtttgaaaccatcacctcatttatttactcagctgagtaaagttcttaag
ctaagcaaggttcaggaggtgatttttggccttgctctgttgaactccagtaacgcagac
ctccgagggtttgctgctcaatttgtgaagcagaagctccctgacctcctccgctcgtac
gtggacgcagacctcggaggtaatcaggaaggtggcttccaggacattgccatagaggtt
ctgcatctgctcctctcccatcttctgttcggccagaagggctcgagcggagtcggacaa
gagcagattgacgcattcctcaaaacactgtgcagagatttcccacaggagcgctgtcct
gtggtgctcgcaccactgctgtaccctgacaaacgggacattctcatggaccggatcctg
ccagactctggagaattgaacaagaccatgatggagagttcacttgctgacttcatgcaa
gaagttggctatggcttttgtgcaagtcttgaagagtgcaggaacataatcctgcagtat
ggggtgcgagaggtgacagccagtcaggtggccagagtgctgggcatgatggcccgcact
cactctgggctatctgatggcatcggcctgcagtccatctcaaatccagtgggtggtggg
atctggagtgatgggaaggacaagagtgacggctctcaggcccacacctggactgttgaa
gttctaattgatgtggtcaaagaagtgaaccccaatctgaatttcaaagaggtgacctat
gaactggatcacccaggcttcctgatccgggacagtaaggggcttcagatagtggtctat
gggatccagaggggtctgggaatggaggtgttcccagtggatctcatctacagaccatgg
aagcatgcagaaggacagctatcattcattcaacactcgctgatgagtcctgaagtcttc
tgctttgttgactacccctgtcatactgttgccattgacatcctgaaggccccacctgag
gatgacaacagagaaatagccacatggaagagcttggacctagtggagagcctcttgcgc
ctctctgaagtcgggcattatgaacaggtgaagcagctcttcagctttcccatcaagcac
tgcccggacatgctagtgctggcgctgctacagatcagcacctcctggcacaccctgcgt
catgagctcatctccaccctcatgcccatcttcctgggcaaccaccccaactctgccatc
atcttgcactatgcctggcatggacagggccagtccccctccatccgccagctgatcatg
cactctatggctgagtggtacatgagaggagagcaatacgaccaggccaagctatcccgc
atcctggatgtggctcaggacttgaagtctctatcgatgctgctgaatggtactccattt
gcctttgttattgaccttgctgcacttgcctctcgccgtgaatacctcaaacttgacaaa
tggctcactgacaaaattcgagagcacggggagccgttcatccaggcgtgtgtcacattc
ctgaagagacgctgtccctctatcatgggtggtttggccccagagaaagaccagccgaaa
agtgctcaacttcctcctgaaacactggctaccatgcttgcatgtctgcagtcttgtgct
gggagtgtgtctcaagagctgtcagagacaatcttgaccatggtggccaactgtagcaat
gtaatgaacaaggcccggcagccgccaccaggagtcttgccaaagggacgagctcccagc
accagcagcttagatgctatttcacctgtgcagatggaccctctctctgcgatgggctct
ttgagtctaggtgtctcgtcaaccacctctcacaccccgagcatgcaaggattccccagc
ctgcagggctctgccttcagtaacccccagtccccagccaaagccttctcaaacctgccc
aacccgaaccccagcacagctttcccaggaatcaacccactctcttctcagctccaaggt
cctctgagctcaagcttgactgggattggctcaggtttgggcatgcccgctgtcagcagt
gaccccttcggcaccaggaagatgagcacaccagggctgaacccacccaccttccagcag
actgacctctctcaggtgtggcccgaggcaaaccagcactttagtaaggagatagacgat
gaggcaaacagctacttccagcgcatctacaaccatccgccgcaccccacaatgtccgtg
gatgaggtgctggaaatgctgcagagatttaaggactcgaacatcaagcgggaacgggaa
gtttttaactgcatgctgaggaatctgtttgaggagtaccgattcttccctcagtatcca
gacaaagagctacacatcaccgcttgcctctttggggggatcattgagaaaggcctggtc
acatacatggctctgggcttggccttacgatatgtcctggaagccttacgcaaacctttc
ggatcaaagatgtattactttgggatcgctgcactagatagatttaaaaatagactgaag
gactatcctcagtactgtcagcacttggcgtcaatagcccatttcctgcagtttccgcac
catttacaagagtatatagagtatggccagcagtccagagaccctcctgtgaagatgcaa
ggctccattaccaccccaggtagcctggctttagcccaggctcaagctcagtctcagacc
cccaaagcccctctacctggccaggccagcaccttagtgaccacagccaccacaacaacc
accgctgccaaaaccaccaccatcacgagacctacagctgttggaccgaagaaggacgtg
ccaccttcaatcaacaccacaaacattgacaccttgttggtggccacagaccaaactgaa
aggatcgttgagcccccagagaatgttcaggagaagattgcattcatcttcaacaacttg
tcccaatcaaacatgtcccaaaaggtggaggagctgaaagagactgtgaaagaagaattc
atgccctgggtctctcagtacctggttatgaagcgtgtcagcattgaacccaacttccac
agcctgtattctaacttcctggacacactgaaaaacccagagtttgtcaagatggttctc
aacgagacttacagaaacatcaaggtcctccttacctctgataaggcagctgctaacttc
tcagatcgatccctgctgaagaatttgggtcactggcttggaatgatcaccctagctaaa
aacaaacccatcctgtacacagacctggagctgaaatctctcttgctggaggcttatgtg
aaaggccaacaggagttactgtatgtcgtcccctttgtggccaaagtcttggaatcaagt
ctacggagtgtgatcttcagaccacagaacccttggaccatgggtatcatgaatgtactg
gctgagctccaccaggaacatgacttaaagcttaacctcaagtttgagattgaggtgctc
tgcaagaatctgtctttggacatcagtgagctaaaaccaggaaacctactgagagacaaa
gataaactgaagaacttggaggaacagctctctgcaccaaagaaagagaccaagcctcct
gaagagatgctgcctatagttacaacaggagtagattctgttccatttacagctgctccg
tcaactccggccaccaccacgacctgtacggccactggaccacccacaccacagttcagc
taccatgacatcaatgtgtatgccttggctggcctggcaccgcacatcaacatcaatatt
aatatcccattactacaggcccaccctcagctgaagcagtgtgtgagaccagcaattgag
cgtgctgtacaggaactggttcacccagtggtggaccgatccatcaagattgccatgacc
acctgtgagcagatagtcaggaaggacttcgcactagattctgaggagtctcacatgcgt
gtggccgcccaccacatgatgcgtaacctgaccgccggcatggccatgatcacctgcagg
gagcctctgctcataagcatcgccaccaacctgaagaacagctttgctgcagctcttagg
gctcccacaccccagcagagagagatgatggaagaggcggctgctcgcattgcacaggac
aactgtgagcttgcttgttgctttatccagaagacagcagtggagaaagctggaccagag
atggacaagaggctggcaactgaattcgagctgaggaagcatgctcgccaagaaggccgt
cgctactgtgaccctatggtgctcacctatcaggctgagcgcatgccagagcagatcaga
ctgaaggtcggtggagtagatcctaaacagctggctgtttatgaggagtttgcccgtaat
gtcccaggcttcctacccagtaatgacctgtctcagcccactggtttccttgcccaacca
atgaagcaacaggcatggcccacagatgatgtggctcacatctatgataagtgcatttcg
gacctggagcagcacatgcatgcaattccacctgccctagccatgaacccacagacccag
gccatacgcagccttctggaggctgttgtcatggctagaaactcccgtgatggcatcgct
gccctgggccttttgcagaaggctgtcgagggtctgctggatgccaccagtggcgctgat
cctgatcttttgctgagctacagggagtgccacctactggtgctgaaagccctacaggac
ggtcgtgcctacggtccacagtggtgcaacaaacaaatcaccagatgcctgattgagtgc
agagatgaatacaagtataacgttgaggccgtagagctcctcattagaaaccacctggtc
aacatgcagcagtatgacttacacctggctcagtccatggagaatgggctcaactacatg
gcagtggcatttgccatgcagctggtgaagctcctactggttgacgaacgtagcgtgagt
cacatcactgaagcggatctcttccacaccattgagacactgatgagaaccaatgctcac
tctagagccaatgctcctgaaggtttgccccagctgatggatgttgtccgttccaactat
gaggccatgatcgatcgtcaccatggtgggccgaacttcatgatgcactctgggatttct
caagcctctgagtacgatgacccaccaggccttagagagaaagcagagtacctgctgaga
gaatgggtcaacctgtaccactcagcagctgcaggaagagacagcaccaaggccttctct
gcatttgttggccagatgcaccagcagggcatcctgaagaccgatgacctcatcactcgc
tttttccggctgtgcacagaaatgtgcgtggagatcagttaccgtgctcaagccgaacag
cagcacccaaccaccagccccgccatcatcagagccaagtgctaccataacctggatgct
tttgttcggctcattgcgcttcttgtcaaacactctggagaggccaccaacacagtcacc
aaaatcaacctgctcaacaaggttctaggcattgtggtgggtgtattgatccaggatcac
gatgtaaggcagacggagttccagcagcttccgtaccacagaatcttcatcatgctcctg
ctggagcttaacgcaccagagcatgtgctggagaccatcaacttccagaccctcactgcc
ttctgtaacacctttcacatcctgaggccaagtaaagcacctggttttgtctatgcttgg
ctggagctcatctcacaccgcatctttattgccaggatgcttgcacataccccacaacag
aagggttggccaatgtatgcccagctgctgatagacttgttcaagtatcttgcacccttc
ctaaggaatgttgaactcaacaaacctatgcaaattctctacaagggaacacttcgtgtg
ctgcttgtcctgctacatgacttcccagagttcctgtgcgactaccattatggtttctgc
gacgtcatcccgcccaactgcatccagctgaggaacctgatcctgagtgccttcccccgc
aacatgaggcttccagaccccttcacccctaatctgaaggtggatatgctgagtgagatc
aacatcgctccccgcatcctcactaacttcactggtgtgatgccatcccagtttaagaag
gatcttgactcctacctcaagacccgttctcctgtcaccttcctttctgagctgcgcagc
aacctgcaggtgtccaatgagccaggcaaccgttacaacattcagctgatcaatgctctg
gtgctgtacgttggaacccaggccattgcccacatacacaacaagggtagcactccctcc
atgagcaccatcactcactcggctcacatggacatcttccagaacctcgcagtcgatcta
gacactgagggccgctatctgttcctgaatgcgatagccaatcagctgcgttatccaaac
agccacacacactactttagctgtaccatgctgtatctgtttgccgaggccaacgctgaa
gccattcaagagcagatcaccagggtcctgctggagaggctaattgtgaacaggccgcac
ccatggggtctgctcatcaccttcattgagctgatcaagaaccctgcctttaagttctgg
agccatgattttgtgcactgtgccccagagatcgagaagttgttccagtcggtggctcag
tgctgcatggggcagaagcaggcccagcaggtgatggagggaacgggtgccagttag
DBGET
integrated database retrieval system
