Sinocyclocheilus grahami (golden-line barbel): 107586072
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Entry
107586072 CDS
T04918
Name
(RefSeq) protocadherin-15-like
KO
K16500
protocadherin-15
Organism
sgh
Sinocyclocheilus grahami (golden-line barbel)
Brite
KEGG Orthology (KO) [BR:
sgh00001
]
09180 Brite Hierarchies
09183 Protein families: signaling and cellular processes
03037 Cilium and associated proteins [BR:
sgh03037
]
107586072
04515 Cell adhesion molecules [BR:
sgh04515
]
107586072
Cilium and associated proteins [BR:
sgh03037
]
Primary cilia and associated proteins
USH complex and associated proteins
107586072
Cell adhesion molecules [BR:
sgh04515
]
Cadherins
Protocadherins
107586072
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
Cadherin
ECD
PCDH15_12th
Cadherin_FAT4_N
Cadherin_CELSR2_9th
Cadherin_2
SGBP_BT4661-like
Motif
Other DBs
NCBI-GeneID:
107586072
NCBI-ProteinID:
XP_016128777
LinkDB
All DBs
Position
Unknown
AA seq
1817 aa
AA seq
DB search
MRRRWWRSGLVIGLLVIITQISAQNTEDWHYEECKLSRSGPPATIVTIDEESPNGTVLVE
NMQINGRAQDPDRTISLTLLDNYDYWVILDSALQRLYLNSTGRVLDRDPPSYITTIVVQI
QCTNELVGTVILHEVRIVVRDRNDNTPRFQQPRYYVSVNELSPVGTTIFTGFSGNNGAMD
IDDGPNGQIEYTIRYNPNDPMSNRTVRVAGTLSGNIVLAERLNYEERTRYLIIVQANDRA
PYPGTRRTATTTLTLDVSDGDDLGPMFLPCVLVNNTQDCNPITYRLAIPELTDPSKLNPL
NVTPPIRAIDQDRNIQPPSDRPGILYFILVGQPATYPEFFSLNRSTAELRLLKPVDRELY
QRFNLVIKAEQDNSHPLPAYANLQIEILDENNQAPYFQRSSYQGFISESASVGTTISGIT
NLTAPLGIIALDNDIEETKDPQLKITLNDHTSIFSITSTGITRYLTLLKPVDREIQTNYT
LTLVASDGVQQSRPVMVDILVIDANDNTPTFSLVSYSVEIFTNMLPGETVLQLTAQDADA
GLNGLITYIILAGDQGDFIINNRTGRITLAPGVTLSVGRSYALTVRASDNAPDPERRSSI
TTVYIEVLPPNNQSPPRFPIQTYNLEISEAMRIGAILLNLQATDRELDPITYQIASGDPQ
QVFNLSRTIGLLLLAKPLDRETIDQYRLIVTASDGHPGGISTATVSIVITDVNDNDPTFD
LTLPRNLTVREEEANVLVGQVRATDPDGGLNGQVRYRLLSFVSLFTINATGSIFSAVPLD
RETRSWYDLIVEASDGAVDPRRTTITLLVEVTDINDNSPVFSQPIYTVNVPENTPAGTVI
LRLSAVDADLVSNVTYRIKTEAARQLFTVNRLTGAVSVLQALDFEDLAAGNSTYTFEVEA
LDHGGVLLPGTATVIVRITDMNDFSPVFRQALYKGMVAPNAEKGTVITTVLAEDQDPPGT
PASKVRYRVDQDLSPYSGSIFDVETETGRVITKVNLNEQPNAVFRLVVIAYDDGEPVKMN
RTTVEITVLQPSRIPIFTEEEYRFSLVSENAPVGTPVGIILATAVNTTVFYSIVSGNEGG
EFTVNNRTGIIYTNKLLDYESVTSYVLRVQADSLAIILANLRVPSKTNTAKVFIDVQDEN
DHPPVFTRSLYIGGVTEDTKTFTTVLKVVATDVDTGNYSKMAYRLIIPPTPEGQDSFVIE
PYTGVIKSAIMFRNMRRSYFKFQVIATDNYGQGLSSRADVVVSVVNALDMQVVVSNVPPT
VVEENKEQLISILERYVQDQIPGAKVIVESIGPRRHGEGYELEDYTKSDLQVYAIDPLTN
RAISRQELFKFLDGKILDINKEFQPYLGEGGRILEIRSPDIVASVKKAAQAVGYTEGALL
ALAIIIILCCIPAILIVMVTYKQFKERQAECAKTARIQMALPAGKSTGGGAPTNLYEELG
DGGMLGLQRRRKSVIEEADRQSLIRAFASRAIAAHKLCGGNGKLLDKLPKSESNITFLSD
EQPLTTQNPLYRDGASSSPEPNSEVQRVGEFLDSDIPSPTSPISQMTSWSLPSRIRGRGL
YDALCRQALWDPTEWEEQELKVGLKDSREELDADVDQSGRSTETKLSVREQARQFEQQAL
AERTPRQSRDSYASLDPDDPLLSAFMFSSSPISVGKDIPPCIIITGGDGETPPPPMAQRP
TPPVLRKFSSSISNYMTVEPCEITLEFISDSSPPLPHPVPSRSFLSPPLLQQDFTPPPTP
TPVQSPTPTPKLRGILKSMPRSADSIDVKDDSSCEGGSKDSTTVVLKEPESKPGETDSSQ
LESDSSSQPSNQPIPVE
NT seq
5454 nt
NT seq
+upstream
nt +downstream
nt
atgaggaggcgctggtggcgatcggggttggtgattggcttgcttgttatcatcacccaa
atctcggctcaaaacacagaggactggcactatgaggagtgtaagttgtcacggtcgggt
ccacctgccactatcgtcaccattgatgaggaaagtccaaatggtaccgttcttgtggaa
aacatgcagatcaatggtcgtgctcaggatccagatagaaccatctccttgacgctgctg
gacaactatgattactgggttatccttgactctgcgctgcagagactgtatctcaacagc
actggacgagtgctggaccgagatccacccagttacatcaccacaatcgtggttcagatt
cagtgcaccaatgagctggtgggaacagttattctgcatgaagtacggatagtggtgagg
gacagaaatgacaacacacctcgtttccagcagcctcgttactatgtatcagttaatgag
ctctctcccgtcggtaccaccatcttcaccggcttctcaggaaacaatggagccatggac
atcgatgacggaccgaacggacagatcgaatataccattcggtacaacccaaatgacccg
atgtcaaacaggactgtgcgtgttgctgggactctgtctggtaacattgttttggcagag
cggctgaactatgaggagagaactcgctatctaattatagtccaggccaatgaccgggct
ccgtatccgggaactcgtcgcacggcaaccactactctaactctggatgtttcggatgga
gatgatctgggtcccatgttcctcccatgtgttctggtcaacaacacacaggactgtaac
cctatcacataccgtctggccattcctgagctcactgacccgagtaaactgaaccctctg
aatgtgacacctcccattcgagccattgaccaggacagaaacatccagccgccctccgac
agacccggaatcctgtacttcatactggttggtcaacctgctacatacccagaattcttc
tcactcaacaggagcacggctgagctgcggctgctgaagcctgtggacagagagctgtac
cagcgcttcaatcttgtcattaaggcagagcaggataacagtcaccctcttcctgcatac
gctaacctgcagattgaaattctggatgagaacaatcaggcgccatatttccagcgctcc
tcgtaccagggcttcatcagtgagtctgcctcggttggcaccaccatctcagggatcacc
aacctcacggccccactgggcatcatcgcacttgacaacgacatagaagagacaaaagat
cctcagctgaagatcactctgaatgaccacacctccatcttctccatcacgtctactggc
atcacacgctaccttactctgctgaaaccagtggaccgagaaatacagaccaactacacc
ttaacgttggtggcatctgatggcgttcaacagagcagacccgtgatggtggacatcctg
gtcatcgatgcgaatgacaacacgcccactttcagtctggtgtcctacagtgtggagatc
ttcactaatatgctacccggagagaccgtcctgcagctgacggctcaggacgctgacgct
ggtttaaacggcctcatcacatacatcatcctggctggagatcaaggcgatttcatcatc
aacaaccgcacaggacgaatcacgttagcaccaggggtcacgctgagcgtcggccgttcc
tacgcactgaccgtcagagcgtcagacaatgctcccgaccccgagaggaggagctccata
actacggtctatatagaggttctgccacccaacaatcagagtccaccacgattccccata
cagacctacaacctggagatcagtgaggccatgaggataggagccatactgttaaatctg
caggctacagaccgtgagctggatccgatcacctatcagatagcaagcggtgacccacag
caggttttcaacctttcacgaactataggtcttctgctgctggccaaacctctggacaga
gagaccatcgaccagtatcgcctcatcgtcacggcatctgacggccacccaggagggatt
tccacagccactgtcagcattgtcatcacggatgttaatgacaacgaccccaccttcgac
ctcactcttcccagaaatctgaccgtgagggaggaagaggccaatgtgctcgtgggtcaa
gtcagggccaccgatcctgatggcgggctcaacggtcaggtccgataccgtttgctctcc
tttgtgtctctgttcaccataaacgccacgggcagcatcttcagtgcggttccgttggac
cgagagacacggagctggtacgatctgatcgtggaggcgtcagatggagcagtggacccc
cgcaggaccaccatcacactgctggtggaggtgacagacatcaatgacaacagccctgtg
ttttcccagcccatctacaccgtcaacgtcccagaaaacacccccgctggaaccgtcatc
ctgagactcagtgcggtggatgccgatctcgtctctaacgtgacctacagaataaaaaca
gaagctgctcggcagctcttcaccgtgaaccgtctgaccggcgccgtatcagtcctgcag
gcgctagactttgaggacttggcagcaggcaacagcacctacacatttgaagtggaggcg
ttagatcacggaggagtcctccttcctggcacagccacagtcatcgttagaatcacggat
atgaatgatttctccccggtcttcagacaggcactttataaagggatggtggctccaaat
gcagagaagggaacagtcatcacaactgtgcttgcagaagatcaagaccctccgggtacg
cctgccagtaaagtgcgctacagagtggatcaggatctgtctccgtacagtggaagtatc
tttgatgtggagacagaaacaggacgagttatcaccaaagtcaacctgaatgagcagccc
aacgccgtcttcaggctggtggtcatcgcctatgatgacggagagccggtgaaaatgaac
agaactacagtggaaatcactgtgcttcagccctccaggattcccatcttcaccgaggaa
gagtacaggtttagtctggtgagtgagaacgctcctgtcgggacgcctgtgggaattatt
ctggccacagctgtcaacaccactgtcttttactccatagtgagtggaaatgaaggaggt
gagttcacagtcaataaccgcactgggatcatctacacaaataaacttctggactatgag
agtgtgaccagttatgtgctccgcgtgcaggccgattctctcgccatcatcctcgccaac
ctgcgtgttccctccaaaacgaacacggcaaaggtgtttattgatgtgcaggatgagaat
gatcatcctccggtcttcacaaggtctctttacatcggaggagtgactgaagacactaag
accttcaccacagtactgaaagttgtggctacagatgtcgacacggggaactacagtaag
atggcctacagactgatcatccctcccacgcccgaggggcaggacagtttcgtcattgag
ccgtacaccggcgtcatcaagagtgccatcatgttccgaaacatgcgccggtcttacttc
aagtttcaggtcatcgccacagacaactacgggcagggattgagcagcagggctgatgtg
gtggtgtctgttgtcaatgccttggacatgcaagttgtggtttctaatgtgccacccact
gtggtggaggagaacaaagagcagctgattagtattttggagcgctatgtgcaagatcag
atccctggtgctaaagtgatagtggaatcgatcggtcctcggcgacacggagaaggttat
gaacttgaggactacaccaaatcagacctccaggtgtatgccatcgaccctctcaccaac
agagccatctccagacaagagctcttcaagtttctggatggcaagattctggacatcaat
aaagagttccagccgtacctgggcgagggcgggcggattctggagatccgttctcctgac
atcgtggcgagtgtgaagaaggctgcgcaggctgtgggctacacagagggggctctgctg
gcactggccatcatcatcattctgtgctgcatcccagctattctcatcgtcatggtgacg
tacaaacaattcaaagagagacaggccgagtgtgccaaaactgcccgtatccagatggct
cttcctgccggcaaatcaacaggaggtggcgctccgaccaatctctacgaggagctggga
gatggcggcatgcttggactacaaaggcgccgaaagtctgtaattgaggaggcggatcga
cagagtctcataagagcattcgcctctcgtgctattgccgctcacaaactgtgtggcgga
aatggaaagttgctcgacaagttgcccaagtcagaaagcaacatcaccttcctctcagat
gaacagccgctcaccacacaaaatccactttaccgggatggagcatccagtagtccggag
cccaactcggaggtgcaaagggtcggtgagtttctagacagtgacatcccatctccgacg
agccccatcagccagatgacttcttggtcattgccgtcccgtattcgaggacgagggctt
tatgatgctctgtgccggcaggcactctgggaccccactgaatgggaggagcaagagctg
aaggtggggcttaaggacagcagggaagaacttgatgctgatgtagatcaaagtggtcga
agcacagaaacaaagctgtcggtccgagaacaagccagacagtttgagcagcaagcttta
gctgaacggacgcccagacagagccgggactcttacgcatctctggatccggacgaccca
ctgctaagcgccttcatgttctcatccagtccaatttccgttggcaaggacatcccaccc
tgcattatcatcaccgggggtgacggcgagactccccccccacccatggctcagcggccg
actccacccgtcctgaggaagttcagctccagtatatccaattacatgacggtggagcct
tgtgagatcacattggaattcatatcagactccagtccaccactccctcaccctgtccca
tcccgctcttttctttctcctccacttctgcaacaggacttcaccccaccaccaacccca
actcctgttcagtctccaactcctacacctaaactaagagggatcctcaagagcatgccc
agatctgctgacagcattgatgtgaaagatgacagcagttgcgaaggaggaagtaaagac
tccacgactgttgtcctaaaagagccagagtctaaaccaggcgaaacagacagcagccaa
ttagaatcagactcttcttctcagccctcaaaccaaccaatcccagtggaatga
DBGET
integrated database retrieval system
