Sinocyclocheilus grahami (golden-line barbel): 107587546
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Entry
107587546 CDS
T04918
Name
(RefSeq) tetratricopeptide repeat protein 37-like
KO
K12600
superkiller protein 3
Organism
sgh
Sinocyclocheilus grahami (golden-line barbel)
Pathway
sgh03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
sgh00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
107587546
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
sgh03019
]
107587546
Messenger RNA biogenesis [BR:
sgh03019
]
Eukaryotic type
mRNA degradation factors
3'-5' decay
Ski complex
107587546
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
TPR_2
TPR_1
TPR_14
TPR_11
TPR_19
TPR_16
TPR_8
TPR_12
TPR_17
TPR_CcmH_CycH
TPR_9
TPR_7
ANAPC3
RPN7
TPR_MalT
ARM_TT21_N
HAT_Syf1_CNRKL1_N
SHPRH_helical-1st
HAT_PRP39_N
PknG_TPR
TPR-S
TPR_21
Coatomer_E
HAT_Syf1_CNRKL1_C
BTAD
TPR_15
Motif
Other DBs
NCBI-GeneID:
107587546
NCBI-ProteinID:
XP_016130847
LinkDB
All DBs
Position
Unknown
AA seq
1421 aa
AA seq
DB search
MIRFLFQNHSDKAKCFEVSKKLVEVYQSEKNYLQVARVWRRLIQVREAEEGVENSELLEL
WKEMTRLLQDTVEDQDNETQQHLISAFERALQLIDVPSEAHRSLSQDYIKCLSKLPHEVA
KLKEVCDATLSRYPTHSYPLEALSEHYIRTGDCSEEAASCFSRLSELDPNNSHAHFGLGI
KACQDKKYEDAIKSISLGLKRMRSSIIGWYNLALAQLKMHKYSDSATASSQGLKSSVGNS
DDWTHKLQRLKLEALVRTGRDQDAEEALQILTQISDAKNDPVLLALKGRAHLQKGQTEEA
FQVSAELLSSHPGSVEGLTLKGLVHVAKEQHKQAEESFLEALSGSPDNGELFFLMGRLFW
NMGEEMRRDRSKAHTHLLKAAKLDPYLGSVFRFLGHYYREVAKDQGRARGCYKRAFELDS
SDAESGAATVDLSMEQGDMDSALTVLQSVTERATPGSAKWAWMRRGLYHLKIGQHQQAIA
DLQAALRADPQDWVCWECLGEAYLNRRSFTAALKAFDKAHTLQPTSIYSLYQTAAIKQIL
GRFKEAAAEYRQILEQEDYVPALKGLGECLLALARSALDDYLDGRAVDLIQNAIHYLFRA
LKQRPDLSCLWKLLGDACTTSRTVSPNRAKVLVPGALCGMDPLDQGHTLDQRQLLTLGER
CFGRALKLMPEAPSLWCDLGLNYYHQSRLLSCLNPEEDQQPLLEKAIQCVKKAIMLDSAN
HTYWNALGVVSMAKGIENFALAQHCFIKSVKAESNNVVAWTNLGALYLKKGNIELSHEAF
KIAQSLEPLYVNCWIGQALIAESVGSYDTMDLFRHTTELSTHTEGVKGYAYWVCSTLLDR
SNRDSEIYLYNIVQMNAVSAAQVALSKYTERVQTDPDAFIMLGYLNTHLQLRKQATEAYR
RAVELLQASPHTDKLSFALRVYGRALSDDGRWEEAVRIYSSTPLEELHDLIGLALAYFRI
GRMPESVQAYEKALAVASSEKEKACILTALALIQHRLGNIDHAKTLLFKCSMLKEPVSES
LQCLCSLGLVHGEVTLASATLTELLKLGEHVGGAVEERCLLTCTLLALQGNYSGVHREAA
RAIHRNPGNPSLWALLSRLVPQYCPNKAKGGAVAGSVACHASLTLGKRALLYSGVNQLAS
GRHSGEDRRHNALKTIQRAVLLCPDDPAGWAGLMAACHTENTACLLQGSAPRREDLERAH
MTLVSEKVKGLQAEDGLLAQALEGWVLQQAVTGLKQSGQYDQAETLCSQVLSVSPEQPVV
FLMLRQVQCERLLLSDAGNCVPPAVLDQLSAAVMANHTSVSAWHWLAEVYHSQGLLAQAS
VAYRQSLQLASQLGDHIGKMSSLLQLALLALMPCLAGVCVSEWKDLVLEASNEVLKMGSS
PVALLFQALLQFSIKMGARETRRLLEKIVYASASGGWCLCL
NT seq
4266 nt
NT seq
+upstream
nt +downstream
nt
atgatcagattcttgtttcagaaccactcagacaaagcgaaatgttttgaagtgagcaag
aagttggtggaagtctatcagtcggagaagaactatttacaggtggcccgagtgtggagg
aggttaatccaggtgagggaggcagaggaaggggtggagaattcagagctgctggagctg
tggaaggagatgaccagactcttgcaggacacggttgaggatcaggacaatgagactcaa
caacacctgatatcagcatttgaaagagctttgcaattgatagatgtgcccagtgaagcc
cacaggagcctttcacaggactacattaaatgtctttccaagcttcctcatgaggtggcc
aagctaaaggaagtttgtgatgccacgctgtcccgctatccgacacactcctaccctcta
gaggccctcagtgagcactacatcagaacaggtgactgcagtgaggaagctgcgagctgt
ttcagccgtctctcggaactggatccaaacaactcacacgctcactttggtcttggtatt
aaagcttgtcaggataaaaaatatgaggatgccatcaaaagtattagtctaggattgaag
cgtatgcgctcctccatcattggctggtataatcttgctctggctcaactaaaaatgcat
aaatactctgacagtgccacagcttccagccaagggctgaagtcgagtgtggggaactct
gatgattggactcataagctgcagaggttgaaactagaggctctggtaaggacaggaaga
gaccaggatgctgaggaagctctgcagatccttacacagatttcagatgccaaaaatgac
ccagtgcttttagctttgaaaggaagagctcacttgcaaaaaggccaaactgaggaagca
tttcaggtttcagctgagctgctgagctctcacccaggatctgtggaaggtctcactctg
aaggggctggtgcatgttgcgaaagaacagcacaaacaagctgaagaaagctttctagag
gctttatccggtagcccagataatggggagttgttcttcctgatggggcgcctgttctgg
aacatgggagaggaaatgcgaagggatcgcagcaaagcccatacacatttactcaaggct
gctaaactggacccgtatctcggttcagtgtttcgttttctgggtcattactatagagag
gtggcaaaagatcagggcagagccagaggctgctataagagagcgtttgagctggattcc
tctgatgcagagtctggagcggctactgtagacctcagcatggagcagggggacatggac
tcggctctgactgttctgcagtctgtaacagagagagccactcctggctctgctaaatgg
gcctggatgaggagagggctctaccacctcaagattggccagcatcaacaggccattgca
gatctgcaggcggcgttgagggcagatcctcaggattgggtgtgctgggaatgtttaggt
gaggcttaccttaaccgcaggagtttcacagcagccctgaaagcatttgataaagcacat
actctgcagcccacctccatctatagcctctatcagaccgctgccatcaaacagatcctc
ggccggtttaaagaggccgctgcagagtacaggcagatcttagagcaggaggactacgtg
ccggcattgaaaggtctgggtgaatgcttgctagccttggctagaagtgcacttgatgac
tatcttgatggaagagctgtagatttgatacagaatgccatccattaccttttcagagct
ttaaagcaaaggccagacctgtcgtgtctgtggaagttactaggtgatgcctgcaccacc
tccagaactgtgtccccaaaccgagccaaagtgctggtgcctggagctctatgtggaatg
gatccacttgatcagggccatacactggaccagagacagctcctcactctaggagaaagg
tgctttggtcgtgctttgaaactcatgccggaggcccctagtctgtggtgtgaccttggc
ctgaactactaccaccaatccagactgctcagctgcctcaatcctgaagaggatcagcag
cctctgctggagaaagccatacagtgtgtgaagaaggcgatcatgctcgacagtgcaaat
cacacatactggaatgccctcggggtggtctccatggcaaagggaatagaaaactttgca
cttgcacaacactgctttatcaaatcggtaaaagcggagtcaaataatgtggttgcatgg
accaaccttggtgctttgtatctgaagaagggaaatatagagctctcgcatgaagctttt
aagattgctcagtctctagaacccctctatgtgaactgctggatcggacaggccctgatt
gctgagtcagtgggcagttatgacaccatggatcttttcagacacaccacagaactgagc
actcataccgagggagtgaagggttatgcatattgggtttgctccacactgctggacagg
agcaacagagactccgagatctacctctacaacatagtccagatgaacgctgtctctgct
gcccaggtggctctgagcaagtacaccgagagggttcagacagacccagatgccttcatc
atgctcggatacctgaacacacacctgcagctgaggaaacaggccactgaggcatatcgc
agagctgtcgagttgcttcaggcatcccctcacacagataagctcagctttgctctgagg
gtttatggacgtgcactcagtgatgatggacggtgggaagaagcagtgcgtatttattcc
tccacaccactagaggagctgcatgatctcattgggctggcgcttgcctatttcagaatc
ggtcgcatgccagaaagtgttcaggcctatgagaaagccctcgcagttgcctctagcgag
aaggaaaaggcctgtatactcactgcactggccctgatacagcacaggctgggcaacatt
gatcatgccaaaactcttctcttcaagtgctccatgctgaaagagcctgtctcagagagt
ctgcagtgtctgtgttctctgggtttggttcatggggaagtgaccctggcaagtgctacg
cttactgagctgctaaaactgggggaacatgtaggaggcgctgtggaggagcgttgtctg
ctcacttgcaccctgctggccctgcagggcaactatagcggcgtacacagggaggctgct
agggctatacacaggaacccaggaaatccttctctctgggctcttctctccagactggtc
ccacagtactgccccaacaaagccaaaggaggtgctgtggctggcagtgtggcgtgtcat
gccagcttgacgcttggaaagagggcgttgctgtacagtggagtgaatcaattggcctca
ggccggcactctggtgaggacagaagacacaacgctctgaaaacaatccagagagctgtg
ctgctgtgcccagatgatcctgctgggtgggcggggctaatggctgcctgtcacacagag
aacactgcatgcttactccaaggctccgcccctcgcagagaagatctggagagggcgcac
atgactctggtgtctgaaaaagtgaagggcctgcaggcagaggatgggctcttggctcag
gctctggagggatgggtgctgcagcaggccgtgactggactcaaacagagtggccaatat
gaccaggcagagactctctgctcccaggttctgagtgtatctccagagcaacctgtggtg
ttcctgatgttaaggcaggttcagtgcgagcgcctcctgttgtctgatgccggtaactgt
gttcctcctgcggtgctggatcagctcagcgctgctgtcatggccaatcacacatctgtg
tccgcctggcattggttggcagaagtgtaccattctcagggtctgctggctcaggcctct
gtggcatatagacagagtcttcagctagcctctcagctcggtgaccacattggaaagatg
agcagtctgctccaactagccctgctggcactcatgccatgtttggctggtgtctgtgtc
tctgagtggaaggatctggtgttggaggccagcaatgaagttttaaagatgggcagctca
ccagtagctctgctcttccaagccttactgcagttctctataaagatgggtgccagggaa
acccgtcgcctattggagaaaatagtttatgcttcagcctcaggaggctggtgtctgtgt
ctctga
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integrated database retrieval system
