Sphingopyxis granuli: SGRAN_3080
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Entry
SGRAN_3080 CDS
T04372
Symbol
rpoB
Name
(GenBank) DNA-directed RNA polymerase subunit beta
KO
K03043
DNA-directed RNA polymerase subunit beta [EC:
2.7.7.6
]
Organism
sgi
Sphingopyxis granuli
Pathway
sgi03020
RNA polymerase
Brite
KEGG Orthology (KO) [BR:
sgi00001
]
09120 Genetic Information Processing
09121 Transcription
03020 RNA polymerase
SGRAN_3080 (rpoB)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
sgi03021
]
SGRAN_3080 (rpoB)
03400 DNA repair and recombination proteins [BR:
sgi03400
]
SGRAN_3080 (rpoB)
Enzymes [BR:
sgi01000
]
2. Transferases
2.7 Transferring phosphorus-containing groups
2.7.7 Nucleotidyltransferases
2.7.7.6 DNA-directed RNA polymerase
SGRAN_3080 (rpoB)
Transcription machinery [BR:
sgi03021
]
Prokaryotic type
Bacterial type
RNA polymerase
Core subunits
SGRAN_3080 (rpoB)
DNA repair and recombination proteins [BR:
sgi03400
]
Prokaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TCR (transcription coupled repair) factors
DNA-directed RNA polymerase complex (RNAP)
SGRAN_3080 (rpoB)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNA_pol_Rpb2_6
RNA_pol_Rpb2_3
RNA_pol_Rpb2_2
RNA_pol_Rpb2_7
RNA_pol_Rpb2_45
RNA_pol_Rpb2_1
Phage_Mu_Gam
Motif
Other DBs
NCBI-ProteinID:
AMG75427
UniProt:
A0AA86L507
LinkDB
All DBs
Position
complement(3382061..3386239)
Genome browser
AA seq
1392 aa
AA seq
DB search
MATKATSVGKALEATASKRIRKLFGNIHEAVEMPNLIEVQRESYEQFLRSDPSVGYVSGL
EKTLRSVFPIRDFAGTAELDFVHYELEDPKYDVEECRQRGITYAAPMKVTLRLIVFEVDS
ETDTRSVLDIKEQDVYMGDMPLMTENGTFFINGTERVIVSQMHRSPGVLFDHDRGKTHSS
GKYLFAARVIPYRGSWLDFEFDAKDIVNVRIDRKRKLPVTTLLYALGMSGEDILNFFYDR
LVFERAENGWKVPFVVENWRGAKPAFDVVDAKTGEVVFAAGHKISPRLANKAAKDGLDTL
LIPTEEIFGRYSAYDLINDATGEIYIEAGDEVTAENLEKMDAAGIDKLVLLDIDHNNTGP
WIRNTLKADKAEDRDQALSDIYRVMRPGEPPTRETAEALFGGLFFDPERYDLSAVGRVKL
NMRLGLDAEDTVTTLRSEDILAVVKELVNLKDGKGEIDDIDNLGNRRVRSVGELLENQYR
VGLLRMERAVKERMSSVDVSTVMPNDLINAKPAVAAVREFFGSSQLSQFMDQTNPLSEVT
HKRRVSALGPGGLTRERAGFEVRDVHPTHYGRICPIETPEGPNIGLINSLATFARVNKYG
FIETPYRRIVDGKVTNEVVYLSAMEESKHTVAQANADLNPDGSFAEELISAREAGEFLMA
PKGQITLMDVSPKQLVSVAASLIPFLENDDANRALMGSNMQRQAVPLLRAEAPVVGTGME
GTVARDSGAAIAARRGGIVDQVDATRIVIRATDMVEPGKSGVDIYRLQKFQRSNQNTCIN
QRPLVKVGEVIRTGDIIADGPSTELGELALGKNVLVAFMPWNGYNYEDSILISERIVKDD
VFTSIHIEEFEVTARDTRLGPEDITRDIPNVGEEALRNLDEAGIVYIGAEVGPGDILVGK
ITPKGESPMTPEEKLLRAIFGEKASDVRDTSLRLPPGVSGTVVEVRVFNRHGIDKDERAI
AIEREEIERLKQDADDERSILNRATFSSLKELLVGQTTSAVPKGMKKGEALTEEQLVELE
RSDWWKLAVVDDRAQAALEAIKAQYDEAIKRINAKYEDRVEKLQRGDELAPGVLKMVKVF
VAIKRKLQSGDKMAGRHGNKGIISRILPIEDMPFLEDGTHVDVVLNPLGVPSRMNVGQIL
ETHLGWASRGFGRQITAALDEWRAANPNPEAASPPEAVREALLNAYGEDYAADIEARTPD
QVVDLAGRLSLGVPFATPVFDGAREGDVSAMLERAGLDRSGQVDLYDGRTGDRFDRRVTV
GYMYILKLHHLVDDKIHARSIGPYSLVTQQPLGGKAQFGGQRFGEMEVWALQAYGAAYTL
QEMLTVKSDDVIGRTKVYEAIVKGDDTFEAGIPESFNVLVKEMRSLGLNVELSSYSDEDP
DEGPDALPEAAE
NT seq
4179 nt
NT seq
+upstream
nt +downstream
nt
atggcgaccaaggcgacgtcggtgggcaaggccctcgaagcaaccgcaagcaagcgaatc
cgcaagctgttcggcaacatccacgaagcggtggaaatgcccaacctcatcgaggtgcag
cgcgaatcctatgaacagtttctgcggtccgacccctcggtcggctatgtctcgggcctc
gaaaagacgctgcgcagcgttttcccgatccgcgatttcgccggcaccgccgaactcgac
ttcgtccactacgaactcgaagacccgaaatacgacgtcgaggaatgccgtcagcgcggc
atcacctatgcggcaccgatgaaggtcacgctgcgcctgatcgtgttcgaggtcgacagc
gaaaccgacacccgctcggtcctcgatatcaaggaacaggacgtctacatgggcgacatg
ccgctcatgaccgagaacggtaccttcttcatcaacggcaccgagcgcgtcatcgtgtcg
cagatgcaccgctcgccgggcgtgctcttcgaccacgaccgcggcaagacgcactcgtcg
ggcaaatatctgtttgccgcgcgcgtcattccctatcgcggctcgtggctcgatttcgag
ttcgacgccaaggacatcgtcaacgtccgcatcgaccgcaagcgcaagctgccggtcacg
actctgctttatgcgctgggcatgtcgggcgaggacatcctcaatttcttctacgaccgc
ctcgtcttcgagcgcgccgagaacggctggaaggtgcccttcgtcgtcgagaactggcgc
ggtgcgaagcccgcgttcgacgtcgtcgacgccaagaccggcgaagtcgtcttcgccgcg
ggccacaagatcagcccgcgtctcgccaacaaggcggcgaaggacggactcgacacgctg
ctgatcccgaccgaggaaatcttcggccgctattcggcctatgacctgatcaacgacgcg
accggcgaaatctatatcgaggccggcgacgaagtgacggccgagaatctcgaaaagatg
gacgcggcgggcatcgacaagctggtgctgctcgacatcgatcacaacaacaccggcccg
tggatccgcaacacgctgaaggccgacaaggccgaggaccgcgaccaggcgctgagcgac
atctatcgcgtcatgcgccccggcgaaccgccgacgcgtgagacggcggaagcgctgttc
ggcggcctgttcttcgaccccgagcgttacgacctgtcggcggtcggccgcgtcaagctc
aacatgcgcctcggtctcgatgccgaggacacggtgacgacgctgcgcagcgaggacatc
ctcgctgtggtcaaggaactggtgaacctgaaggacggcaagggcgagatcgacgatatc
gacaatctcggcaaccgccgcgtccgttcggtcggcgaactgctggaaaatcagtatcgc
gtcggcttgctgcgcatggagcgcgcggtgaaggagcgcatgtcgtcggtcgacgtgtcg
accgtcatgccgaacgacctgatcaacgcgaagcccgcggtcgccgcggtgcgcgaattc
ttcggctcgtcgcagctttcgcagttcatggaccagaccaacccgctgtccgaagtgacg
cacaagcgccgcgtgtcggcgctcgggccgggcggtctgacacgtgagcgcgcgggcttc
gaggtccgcgacgttcacccgacccactacggccgcatctgtccgatcgaaacgccggaa
ggtccgaacatcggtctgatcaacagcctcgcgacctttgcgcgcgtcaataaatacggc
ttcatcgagacgccgtaccgccgcatcgtcgacggcaaggtgaccaacgaggtcgtctat
ctgtcggcaatggaggaatcgaagcacaccgttgcgcaggcgaatgccgatctcaacccc
gacggcagctttgccgaagagctgatctcggcgcgcgaggccggcgaattcctgatggcg
ccgaagggccagatcacgctgatggacgtgtcgccgaagcagcttgtttcggtcgcggcg
tcgctgatccccttcctcgagaacgacgacgccaaccgcgcgctgatgggatcgaacatg
cagcgtcaggcggtgccgctgctgcgggccgaggcgccggtggtcggcaccggcatggaa
ggcaccgtcgcgcgcgattcgggcgcggcgatcgcggcgcgccgcggcggcatcgtcgac
caggtcgacgcgacccgcatcgtcatccgcgcgaccgatatggtcgaaccgggcaagtcg
ggcgtcgacatctatcgcctgcagaagttccagcgctcgaaccagaatacctgcatcaac
cagcgcccgctggtgaaggtgggcgaggtgatccgcaccggcgacatcatcgccgacggt
ccgtcgaccgaactgggcgaactggcgctcggcaagaatgtgctcgtcgccttcatgccg
tggaacggctacaattatgaggactcgatcctcatttccgagcgcatcgtgaaggacgac
gtcttcacctcgatccacatcgaggagttcgaggtcaccgcgcgcgacacgcgcctcggg
ccggaagacatcacccgcgacattccgaacgtcggcgaggaagcgctgcgcaacctcgac
gaggcgggcatcgtctatatcggcgccgaggtcggcccgggcgacatcctggtcggcaag
atcacgccgaagggcgaaagcccgatgacgccggaagaaaagctgttgcgcgccatcttc
ggcgaaaaggcgagcgacgtgcgcgacacttcgctgcgcctgccgccgggcgtgtctggc
acggtcgtcgaggttcgcgtcttcaaccgccacggcatcgacaaggacgagcgcgcgatc
gcgatcgaacgcgaggagatcgagcggctgaagcaggacgccgacgacgaacgctcgatc
ctcaaccgcgcgaccttctccagcctcaaggaactgctggtcggccagaccacaagcgcg
gtgccgaagggcatgaagaagggcgaggcgctgaccgaggagcagcttgtcgagctcgaa
cgctccgactggtggaagctcgccgtcgtcgacgaccgcgcacaggccgcgctcgaagcg
atcaaggcgcagtatgacgaggcgatcaagcgcatcaacgcgaaatatgaggatcgcgtc
gaaaagctgcagcgcggcgacgaactggcgccgggcgtgctcaagatggtcaaggtgttc
gtcgcgatcaagcgcaagctgcagtcgggcgacaagatggccggccgtcacggcaacaag
ggcatcatcagccgcatcctgccgatcgaggacatgccgttcctcgaggacgggacgcac
gtcgatgtcgtgctcaacccgctgggcgtgccgagccgcatgaacgtcggtcagatcctc
gaaacgcatctcggctgggcatcgcgcggcttcgggcggcagatcaccgcggcgctcgac
gagtggcgcgcggcgaacccgaaccccgaagcggcctcgccgcccgaggcggtccgcgag
gcgctgctcaacgcctatggcgaggactatgccgccgacatcgaggcgcggacccccgat
caggtcgtcgacctcgccgggcggctgtcgctgggcgtgcccttcgcgacgccggtgttc
gacggcgcgcgcgaaggcgacgtgtcggcgatgctcgaacgcgccgggctcgatcgctcg
ggtcaggtcgatctgtatgacggccgcaccggcgaccgcttcgaccgccgggtgacggta
ggatatatgtatatcctcaagctgcaccacctggtcgacgacaagatccacgcgcgctcg
atcggcccctacagcctcgtcacccagcagccgctgggcggtaaggcgcagtttggcggc
cagcgcttcggcgagatggaggtctgggcgctccaggcttatggcgcggcgtacacgctg
caggaaatgctgacggtgaagtccgacgacgtgatcggccgcaccaaggtctatgaagcg
atcgtcaagggcgacgacaccttcgaggcgggcattcccgaaagcttcaacgtactcgtc
aaggaaatgcgctcgctgggcctcaacgtcgaactgtcgtcctattcggacgaagatccc
gacgaaggtccggacgctcttcccgaagccgccgaatga
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