Shewanella glacialimarina: FJ709_04175
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Entry
FJ709_04175 CDS
T07885
Symbol
holA
Name
(GenBank) DNA polymerase III subunit delta
KO
K02340
DNA polymerase III subunit delta [EC:
2.7.7.7
]
Organism
sgla
Shewanella glacialimarina
Pathway
sgla03030
DNA replication
sgla03430
Mismatch repair
sgla03440
Homologous recombination
Brite
KEGG Orthology (KO) [BR:
sgla00001
]
09120 Genetic Information Processing
09124 Replication and repair
03030 DNA replication
FJ709_04175 (holA)
03430 Mismatch repair
FJ709_04175 (holA)
03440 Homologous recombination
FJ709_04175 (holA)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03032 DNA replication proteins [BR:
sgla03032
]
FJ709_04175 (holA)
03400 DNA repair and recombination proteins [BR:
sgla03400
]
FJ709_04175 (holA)
Enzymes [BR:
sgla01000
]
2. Transferases
2.7 Transferring phosphorus-containing groups
2.7.7 Nucleotidyltransferases
2.7.7.7 DNA-directed DNA polymerase
FJ709_04175 (holA)
DNA replication proteins [BR:
sgla03032
]
Prokaryotic type
DNA Replication Elongation Factors
Elongation factors (bacterial)
DNA polymerase III holoenzyme
FJ709_04175 (holA)
DNA repair and recombination proteins [BR:
sgla03400
]
Prokaryotic type
SSBR (single strand breaks repair)
MMR (mismatch excision repair)
DNA polymerase III holoenzyme
FJ709_04175 (holA)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DNA_pol3_delta
DNA_pol3_delt_C
DNA_pol3_delta_C
Motif
Other DBs
NCBI-ProteinID:
UCX03782
LinkDB
All DBs
Position
complement(988458..989489)
Genome browser
AA seq
343 aa
AA seq
DB search
MRVYPDQLKTHLQKLPQVCLLFGDDLWLIEDSKRQIIAAAKKQGFDERVQLSQETGFNWG
ELIQEWQSMSLFASRRIIELNLPNGKPGTDGANAFQILLQQPNPDILLIIQGPKAGVEQT
NSKWFKSLDSQGLYIPCATPEGKQFERWLDNRIQQHKLTIHHDAKAMMFNLFEGNLLAAE
QAMQILQLVSPNDNITPEQLTDYFEDQSRFSVFQLTDAILSNHQKQAQHMLAQLQGEGTA
MPILMWAIFKEITLLLNLKLAQLQGEQLSQLWGKYRIWDKRKPLYQAALTRLELHHIEHM
LGLASILELNLKQHGIEDWVGMSHLCILFDPRAHNRLAHIELS
NT seq
1032 nt
NT seq
+upstream
nt +downstream
nt
atgcgggtttatccagaccagctaaaaactcatctgcagaaacttccccaagtgtgttta
ttatttggtgatgatttatggttgattgaagacagtaaaagacaaattattgccgccgcc
aaaaaacaaggctttgatgagcgcgtacagcttagtcaagaaacaggttttaactggggt
gagttaattcaagaatggcaatcgatgagcttgtttgccagtagaaggattatcgaacta
aatttacctaatggtaagccaggtactgacggtgccaatgcttttcaaatattattacag
cagccaaacccagatatcctgttaatcattcaaggtcccaaagcaggcgttgaacaaact
aacagcaagtggtttaaatcacttgatagccagggattatatattccttgtgccacccct
gaaggtaaacagtttgagcgctggttagacaatcgcatccagcagcataaattaaccata
catcatgacgccaaagcaatgatgtttaatttgtttgaaggtaatttactcgccgccgaa
caagcgatgcaaattttgcaactggtcagcccaaatgacaacattaccccagagcaactg
actgactattttgaagaccaatcacgcttcagtgtgttccagcttaccgacgctattttg
agtaatcatcaaaagcaagctcagcatatgttggcacagctgcaaggtgaaggtacagcc
atgcctattttaatgtgggcaatttttaaagaaataaccctattacttaatttgaaacta
gcccaattacagggtgagcaactcagtcaattgtggggtaaatatcgaatttgggataaa
cgaaaacccctttatcaagctgcattaacgcgtttagagcttcaccatattgaacatatg
ttgggtttggcatcgatattagagctcaaccttaaacagcatggtattgaagattgggtg
ggtatgagccatttgtgtattctttttgatccgcgggcacacaatcgtttagcccatata
gaattaagctag
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