Scandinavium goeteborgense: A8O29_021015
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Entry
A8O29_021015 CDS
T06630
Symbol
uvrA
Name
(Genbank) excinuclease ABC subunit UvrA
KO
K03701
excinuclease ABC subunit A
Organism
sgoe
Scandinavium goeteborgense
Pathway
sgoe03420
Nucleotide excision repair
Brite
KEGG Orthology (KO) [BR:
sgoe00001
]
09120 Genetic Information Processing
09124 Replication and repair
03420 Nucleotide excision repair
A8O29_021015 (uvrA)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
sgoe03400
]
A8O29_021015 (uvrA)
DNA repair and recombination proteins [BR:
sgoe03400
]
Prokaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
GGR (global genome repair) factors
A8O29_021015 (uvrA)
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
SHDIR (short-homology-dependent illegitimate recombination)
Supressor
A8O29_021015 (uvrA)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
UvrA_DNA-bind
UvrA_inter
ABC_tran
SMC_N
AAA_16
AAA_29
nSTAND1
DnaJ_CXXCXGXG
RsgA_GTPase
AAA_25
NACHT
Viral_helicase1
T2SSE
cobW
AAA_21
ExoX-like_C
ScfRs
DUF3987
Motif
Other DBs
NCBI-ProteinID:
QKN83654
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All DBs
Position
4235496..4238318
Genome browser
AA seq
940 aa
AA seq
DB search
MDKIEVRGARTHNLKNINIVIPRDKLIVVTGLSGSGKSSLAFDTLYAEGQRRYVESLSAY
ARQFLSLMEKPDVDHIEGLSPAISIEQKSTSHNPRSTVGTITEIHDYLRLLFARVGEPRC
PDHDVPLAAQTVSQMVDNVLSQPEGKRLMLLAPMIKERKGEHTKTLENLASQGYIRARID
GEVCDLSDPPKLELQKKHTIEVVIDRFKVREDLAQRLAESFETALDLSGGTAIVSEMDDP
KADELLFSANFACPICGYSMRELEPRLFSFNNPAGACPTCDGLGVQQYFDPDRIIQNPEL
SLAGGAIRGWDRRNFYYFQMLRSLAEHYEFDIEAPWGSLNANVHKVVLYGSGKESIEFKY
MNDRGDTSVRRHPFEGVLHNMERRYKETESNAVREELAKFISNRPCTSCDGTRLNREARH
VFVENTPLPTISDMSIGHAMEFFQNMKLSGQRAKIAEKVLKEIGDRLKFLVNVGLNYLSL
SRSAETLSGGEAQRIRLASQIGAGLVGVMYVLDEPSIGLHQRDNERLLGTLIHLRNLGNT
VIVVEHDEDAIRAADHVIDIGPGAGVHGGEVVAEGTLEDIMAVPESLTGQYMSGKRKIEV
PNDRVPADPSKVLKLTGARGNNLKDVTLTVPVGLFTCVTGVSGSGKSTLINDTLFPIAQR
QLNGATIAEPAPYRDVTGLEHFDKVIDIDQSPIGRTPRSNPATYTGIFTPVRELFAGVPE
SRARGYTPGRFSFNVRGGRCEACQGDGVIKVEMHFLPDIYVPCDQCKGKRYNRETLEIKY
KGKTIHEVLDMTIEEAREFFDAVPALARKLQTLMDVGLTYIRLGQSATTLSGGEAQRVKL
ARELSKRGTGQTLYILDEPTTGLHFADIQQLLDVLHKLRDQGNTIVVIEHNLDVIKTADW
IVDLGPEGGSGGGEILVSGTPETVADCEASHTARFLKPLL
NT seq
2823 nt
NT seq
+upstream
nt +downstream
nt
atggataagatcgaagttcggggcgcccgcacccataatctcaaaaacatcaacatcgtc
atccctcgcgacaaactgattgtcgtgaccgggctttctgggtcaggtaaatcttcgctg
gcgttcgatacgctgtatgccgaaggccagcggcgctacgttgaatcactctccgcctat
gcgcgtcagttcctgtcattgatggaaaaacctgacgttgaccacatcgaagggctgtcg
cccgcgatttctattgagcaaaagtcaacgtctcacaacccgcgttccaccgtcgggacc
atcactgaaatccacgattatctgcgtctgctgtttgcccgcgtgggcgaaccgcgctgc
ccggatcacgatgtgccgctggcggcgcagaccgtcagccagatggtcgataacgtgctg
tcacagcctgaaggcaagcgcctgatgctgctggcgccgatgataaaagagcgtaaaggc
gagcacactaagacgctggaaaacctggcgagccagggttatatccgcgcccgcattgac
ggcgaagtctgcgacctgtccgatccgccaaagcttgagctgcagaaaaagcacactatt
gaagtcgtgattgaccgcttcaaagtgcgcgaagatctggcccagcgcctggccgaatca
tttgaaaccgcgctggatctctccggcggcaccgcgatcgtttcagaaatggacgatccg
aaagccgatgaactgctgttctccgccaacttcgcctgtccgatttgcggctacagcatg
cgtgaactcgaaccgcgtctgttctcgttcaacaacccggccggtgcctgcccaacctgt
gacggcctcggcgtgcagcagtatttcgacccggaccgcatcatccagaacccggagctt
tcccttgccgggggcgcaatccgcggctgggatcgccgtaacttctactatttccagatg
ctgcgctcgctggcggagcattatgaattcgatatcgaagccccgtggggcagcctgaac
gcaaatgtgcataaagtggtgctgtatggttcaggcaaagagtcaattgaattcaaatac
atgaacgaccggggcgatacctccgtgcgccgccatccgttcgaaggcgtgctgcataat
atggagcgccgctacaaagagaccgaatctaacgcggtgcgcgaggagctggcgaaattc
atcagcaaccggccgtgcaccagctgcgacggcactcgtctgaaccgcgaagcgcgccac
gtgtttgtcgaaaacaccccgctgccaaccatttcagacatgagcatcggccatgcgatg
gagttcttccagaacatgaagctgtccgggcaacgcgccaagattgcggaaaaagtgctg
aaagagattggcgatcgcctgaagttcctggtcaacgttggcctgaactatctttccctt
tcccgctcggcggaaaccctctccggcggtgaagcccagcgtattcgtctggctagccaa
attggtgccggtctggtgggtgtgatgtacgtgctggatgaaccgtctatcggcctgcat
cagcgcgataacgaacgcctgctcggcaccctgattcacctgcgtaacctcggtaacacg
gtgattgtggtagagcacgacgaagatgctatccgcgcggctgaccacgtgattgatatc
ggcccgggcgctggcgtccacggcggcgaagtggtggcggaaggtacgctggaagacatt
atggcggtacccgaatcgttgaccggtcagtacatgagtggcaaacgtaaaatcgaagtg
ccgaacgatcgcgttccggctgacccgtcaaaagtgctgaaactgaccggcgcacgcggt
aacaatctgaaagacgtcacgctgacagtacctgttggcctgtttacctgcgtgacgggt
gtatccggttccggtaaatcaacgctgattaacgacacgctgttcccgattgcacagcgc
cagctcaacggcgcgaccatcgccgagcctgcgccgtatcgcgatgtcacgggcctcgag
catttcgacaaagttatcgatatcgaccagagcccgattggccgtacgccgcgctctaac
ccggccacgtacaccggcatctttacgccagtgcgtgaactgttcgcgggcgtgccggaa
tcgcgtgcgcgcggttatacgccggggcgttttagctttaacgtccgtggcggccgctgc
gaagcgtgtcagggcgatggcgtcatcaaggtggaaatgcacttcctgccggatatctac
gtgccgtgcgaccagtgcaaaggcaagcgctataaccgcgaaacgctagagattaagtac
aaaggcaagactatccacgaagtgctggatatgaccattgaagaagcgcgtgagttcttt
gatgccgttccggcgctggcgcgtaaactgcaaacgctgatggatgtgggcctgacctac
attcgtctcggccagtcggcgacaacgctctccggcggtgaagctcagcgcgtgaagtta
gcgcgtgagctgtccaaacgcggtaccgggcagacgctgtatatcctcgatgaaccgacc
actggcctgcattttgccgacatccagcagttgctggacgtgctgcataagctgcgcgat
cagggcaataccatcgtggttatcgagcataatctggacgtgattaaaaccgcggactgg
attgtcgatctcggcccggaaggcggcagcggcggcggggaaattctcgtctccggtacg
ccggaaacggtcgcagactgcgaagcctcgcatactgcgcgcttccttaagccgttgctg
taa
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