Strigops habroptila (Kakapo): 115601151
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Entry
115601151 CDS
T08851
Name
(RefSeq) CCR4-NOT transcription complex subunit 1 isoform X1
KO
K12604
CCR4-NOT transcription complex subunit 1
Organism
shab
Strigops habroptila (Kakapo)
Pathway
shab03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
shab00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
115601151
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
shab03019
]
115601151
Messenger RNA biogenesis [BR:
shab03019
]
Eukaryotic type
mRNA surveillance and transport factors
mRNA cycle factors
P-body specific factors
115601151
mRNA degradation factors
3'-5' decay
Ccr4-NOT complex
115601151
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Not1
CNOT1_CAF1_bind
NOT1_connector
ARM_Cnot1
CNOT1_TTP_bind
DUF3819
CNOT1_HEAT
CNOT1_1st
Motif
Other DBs
NCBI-GeneID:
115601151
NCBI-ProteinID:
XP_030326607
LinkDB
All DBs
Position
Z:complement(21862207..21922607)
Genome browser
AA seq
2384 aa
AA seq
DB search
MNLDSLSLALSQISYLVDNLTKKNYRASQQEIQHIVNRHGPEADRHLLRCLFSHVDFSGD
GKSSGKDFHQTQFLIQECASLITKPNFISTLSYAIDNPLHYQKSLKPSPHLFAQLSKVIK
LSKVQEVIFGLALLNSFSSDLRGFAAQFIKQKLPDLLRSYIDADVSGNQEGGFQDIAIEV
LHLLLSHLLFGQKGAFGVGQEQIDAFLKTLRRDFPQERCPVVLAPLLYPEKRDILMDRIL
PDSGGIAKTMMESSLADFMQEVGYGFCTSVEECRNIIMQFGVREVTAAQVARVLGMMART
HSGLTDGIPLQSISAPGSGIWSDGKDKSDGAQAHTWNVEVLIDVLKELNPSLDFKVVTYE
LDHPGFQIRDSKGLHIVVFGIQRGLGMEVFPVNAIYRPWKHAEGQLSFIQHSLINPDIFC
FADYPCHTVATDILKAPPEDDNREIATWKSLDLIESLLRLAEVGQYEQVKQLFSFPIKHC
PDMLVLALLQINTSWHTLRHELISTLMPIFLGNHPNSAIILHYAWHGQGQSPSIRQLIMH
AMAEWYMRGEQYDQAKLSRILDVAQDLKALSMLLNGTPFAFVIDLAALASRREYLKLDKW
LTDKIREHGEPFIQACMTFLKRRCPSILGGLAPEKDQPKSAQLPPETLATMLACLQACAG
SVSQELSETILTMVANCSNVMNKARQPPPGVMPKGRPPSASSLDAISPVQIDSLAGMASL
SLGGSAAPHTQSMQGFPPNLGSAFSTPQSPAKAFPPLSTQNQTTGFSGIGGLSSQLPVGG
LTTGSLTGIGTGALGIPTVNNDPFVQRKLSTSGLNQPTFQQSKMKPSDLSQVWPEANQHF
SKEIDDEANSYFQRIYNHPPHPTMSVDEVLEMLQRFKDSNIKREREVFNCMLRNLFEEYR
FFPQYPDKELHITACLFGGIIEKGLVTYMALGLALRYVLEALRKPFASKMYYFGIAALDR
FKNRLKDYPQYCQHLASISHFIQFPHHLQEYIEYGQQSRDPPVKMQGSITTPGSIALAQA
QAQAQVPAKAPLAGQVSTIVTTSTTTTVAKTITITRPTGVSFKKDVPPSINTTNIDTLLV
ATDQTERIVEPPENVQEKIAFIFNNLSQSNMTQKVEELKETVKEEFMPWVSQYLVMKRVS
IEPNFHSLYSNFLDTLKNPEFNKMVLNETYRNIKVLLTSDKAAANFSDRSLLKNLGHWLG
MITLAKNKPILHTDLDVKSLLLEAYVKGQQELLYVVPFVAKVLESSVRSVVFRPPNPWTM
AIMNVLAELHQEHDLKLNLKFEIEVLCKNLALDINELKPGSLLKDKDRLKNLDEQLSAPK
KDVKQPEELPPVTTTTASTTPATSTACTATVPPQPQYSYHDINVYSLGGLAPHITLNPTI
PLFQAHPQLKQCVRQAIERAVQELVHPVVDRSIKIAMTTCEQIVRKDFALDSEESRMRVA
AHHMMRNLTAGMAMITCREPLLMSIATNLKNSFATALRAASPQQRDMMEQAAAQLAQDNC
ELACCFIQKTAVEKAGPEMDKRLATEFELRKHARQEGRRYCDPVVLTYQAERMPEQIRLK
VGGVDPKQLAVYEEFARNVPGFLPTNDLTQPTGFLAQPMKQQAWATDDVAQIYDKCMAEL
EQHLQSIPHTLAMNPQAQALRSLLEAVVVARNSRDAIAALGLLQKAVEGLLDATSGADAD
LLLRYRECHLLVLKALQDGRAYGSPWCNKQITRCLIECRDEYKYNVEAVELLIRNHLVNM
QQYDLHLAQSMENGLNYMAVAFAMQLVKILLVDERSVAHVTEADLFHTIETLMRINAHSR
GNAPEGLPQLMEVVRSNYEAMIDRAHGGPNFMMHSGISQASEYDDPPGLREKAEYLLREW
VNLYHSAAAGRDSTKAFSAFVGQVELLERKMHQQGILKTDDLITRFFRLCTEMCVEISYR
AQAEQQHNPAANPTMIRAKCYHNLDAFVRLIALLVKHSGEATNTVTKINLLNKVLGIVVG
VLLQDHDVRQSEFQQLPYHRIFIMLLLELNAPEHVLETINFQTLTAFCNTFHILRPTKAP
GFVYAWLELISHRIFIARMLAHTPQQKGWPMYAQLLIDLFKYLAPFLRNVELTKPMQILY
KGTLRVLLVLLHDFPEFLCDYHYGFCDVIPPNCIQLRNLILSAFPRNMRLPDPFTPNLKV
DMLSEINIAPRILTNFTGVMPPQFKKDLDSYLKTRSPVTFLSDLRSNLQVSNEPGNRYNI
QLINALVLYVGTQAIAHIHNKGSTPSMSTITHSAHMDIFQNLAVDLDTEGRYLFLNAIAN
QLRYPNSHTHYFSCTMLYLFAEANTEAIQEQITRVLLERLIVNRPHPWGLLITFIELIKN
PAFKFWNHEFVHCAPEIEKLFQSVAQCCMGQKQAQQVMEGTGAS
NT seq
7155 nt
NT seq
+upstream
nt +downstream
nt
atgaatcttgactcgctctcgctggccttgtctcaaatcagctacctggtggacaattta
accaagaaaaactaccgagccagccagcaggaaatacagcatattgtgaataggcacggt
cccgaggcagacaggcatttactacgctgcctattctcgcacgtggatttcagtggcgat
ggtaaaagcagtggcaaagattttcatcagactcaatttctgatccaggagtgtgcatca
ctgattacaaaaccaaatttcatctcgacgctgtcctacgccattgacaatccattgcac
tatcagaagagtctaaagccttcaccccacttatttgcccagttgagtaaagtcataaaa
ttaagtaaagttcaagaggtgatttttggtctcgctttactgaactctttcagctcagat
ctacgaggttttgctgcccagtttatcaaacagaaactcccggatcttttgcgctcttac
attgacgcagacgtcagtggaaatcaagaaggtggcttccaagatattgcgatagaggtc
ctgcaccttctcctctcccatctcctttttgggcagaagggagcctttggggtaggacag
gaacagattgacgctttcctcaaaacattacgtagagattttccccaggagcgttgtcct
gtggtgcttgcaccacttctataccctgaaaaacgggacattctaatggacaggatcctg
cctgattctggagggatagccaaaaccatgatggagagttctctggcagatttcatgcaa
gaagttggctatggcttttgtacaagtgtggaagaatgtcgcaacataatcatgcagttt
ggtgttcgggaagtcacagctgcccaggttgccagggttttgggaatgatggctcgaact
cattcagggttgacggatggtattccattacagtctatttcggctcctggcagtgggatt
tggagtgatgggaaagataaaagtgatggagcacaagcccacacctggaatgtagaggtc
ttaattgatgttcttaaagagctgaatcctagcctggacttcaaagtagtaacctatgaa
ttggaccatccaggatttcagattcgtgacagcaagggcctgcatattgtggtgtttggc
atccagagagggctgggcatggaagtttttccagttaatgccatatacagaccttggaag
catgcagaaggccagctctccttcattcaacattccctcataaaccctgacatcttctgt
ttcgctgactacccttgtcatactgttgccacagacatcctgaaagcaccaccagaggat
gacaaccgggaaattgctacatggaagagcctggatttgattgaatctctgttacgactg
gcagaagtgggacagtatgagcaggttaagcagctcttcagttttccaatcaagcattgc
ccagacatgttggtgttggccttattgcagatcaacacgtcctggcataccttgcgccac
gaactcatctccacactcatgccaattttccttggcaaccatcccaattctgccatcatt
ttgcactatgcatggcatggacagggccagtctccttcaattcgtcagctgatcatgcat
gcaatggcagaatggtacatgagaggggagcagtatgaccaggcaaaactctcacgtatt
cttgatgtggcacaagacttgaaggccttgtcaatgctgctaaatggtactccgtttgcc
tttgttattgatcttgctgcacttgcctctcgacgggaatacctcaaacttgacaaatgg
ctcacagataaaattcgggagcatggggagcctttcatccaggcctgtatgactttctta
aagagaagatgtccatctatcctgggtggccttgctccagaaaaagaccagcccaaaagt
gctcaactccctccagaaaccttggcaactatgttggcatgtcttcaagcttgtgctggg
agtgtttctcaggagctgtcggagacaatcctcaccatggtagctaactgcagcaacgtc
atgaacaaagccaggcagccaccacctggagtcatgcccaaaggacgcccgcccagcgcc
agcagcttggatgccatctctcctgtacagatcgactcgcttgcaggaatggcatctctt
agcttaggtggctcagctgctcctcacacacagagcatgcaaggtttccctccaaacttg
ggctctgcattcagtactcctcagtcaccagcaaaagcattccccccgctttccacccaa
aaccagacaacgggtttcagtggcatcggaggactgtcttcacagcttccagtaggtggt
cttactacgggtagcctgactggcataggaactggagccctgggcattcccacggtgaac
aatgaccccttcgtgcaaaggaagctgagcacatctggactgaaccagcctacattccag
cagagtaagatgaaaccttctgacttatctcaggtgtggccagaggctaatcagcacttt
agcaaagaaatagatgatgaggcaaacagctacttccagcgtatttacaaccatccacca
catccaaccatgtctgtagatgaggtcttggaaatgctgcagaggtttaaggactccaac
attaaacgggaacgagaagtgtttaactgtatgctgagaaacttgtttgaggaataccgc
ttctttccccagtacccagataaagagctgcacataacagcctgcctctttggtggtatc
atagagaaaggactggttacttatatggcattgggcctggccctgcgctatgttcttgaa
gccttacgaaagccttttgcatctaaaatgtactattttggtattgctgcactagacaga
tttaaaaataggttgaaggactatccccagtattgtcagcacttggcttctattagtcac
tttatacagttcccacatcacttacaggagtacatagaatatggacagcaatccagagat
cctcctgtgaagatgcagggttcaatcaccacccctggaagtattgcacttgcccaggct
caggcccaggcccaagttccagcaaaagctcctcttgctggccaagtcagcactatagta
accacctcaaccaccaccactgttgcaaaaaccattacaatcacccggccaactggagtc
agcttcaagaaagatgtgccaccttccattaatactaccaacattgatacgctgttagta
gcaacagatcaaactgagagaattgtggaacctccagagaatgtccaggagaaaattgct
ttcatcttcaataatctgtctcagtcaaatatgacacagaaggttgaagagttgaaggaa
acagtgaaagaagagttcatgccttgggtatcgcagtatcttgtgatgaagagagtcagt
attgagcctaactttcacagcttatattcaaacttccttgacacacttaagaatccagag
tttaataaaatggttctgaatgaaacctacagaaatatcaaggtgctactgacatcagat
aaagctgcagccaacttctcagaccgttccttgttaaagaaccttggtcactggctggga
atgattacgctggcaaaaaataagcccatcttgcatacggatttggatgtgaaatcgcta
ctgctggaagcatatgtaaagggacagcaggaattgctttatgtggtgccatttgttgcc
aaagtcttagaatccagtgtcaggagtgtggtcttcaggcctccaaacccatggacaatg
gccattatgaatgttttagctgaactacatcaagaacatgatctaaaattgaatctgaag
tttgagattgaggtactctgcaagaatcttgcactagacatcaatgaactgaagcctgga
agcctcctgaaagataaggatcgtttgaaaaatctggatgagcagctgtctgctccaaag
aaggacgtgaagcagccggaagagctaccacccgtcacaacaacgactgcttccacaact
ccggctaccagcaccgcttgtacagccacagttcctccacagccccagtacagttaccat
gacatcaatgtctattctttaggagggttggctccacatattaccttaaatccaacgatc
ccgctgttccaagcccacccacagttgaagcagtgtgtgcggcaggcgattgagcgagcg
gtgcaagagcttgtccatccagtggtggaccgatctattaagattgccatgactacttgt
gagcagatagtcaggaaggactttgcattggattcagaggagtcacgaatgcgtgtggct
gcgcaccatatgatgcggaacctgacagctgggatggccatgatcacctgcagggaacct
ttgctgatgagcatagctaccaacttgaaaaacagttttgctactgcgctgagggcagcc
tccccgcaacagagggacatgatggagcaggcagcagcccagttagcacaggacaactgt
gagctggcctgctgctttatccagaagacggctgtggaaaaggcaggccctgagatggac
aagaggctcgcaactgaatttgagctcagaaaacatgctagacaagagggtcgtcggtac
tgtgatcctgttgtgttaacttaccaggctgagaggatgcccgaacagatcaggttaaag
gttggaggtgtggacccaaaacagctggctgtttacgaagagtttgcacgcaatgtccct
ggctttctgcctaccaatgacttaactcagcccacaggattcttggctcagcctatgaag
cagcaagcctgggctacagatgacgtagcacaaatctatgacaaatgtatggcagaactg
gagcagcacctgcagtccattccacacaccttagccatgaatcctcaagctcaagcattg
cgcagcctcttggaggctgtagtagtggctcggaactcccgggatgctattgctgcgctt
ggactactgcagaaggctgtagagggcttactggatgccaccagtggggcagatgctgac
ctcctgcttcgctatcgggagtgtcatctgcttgtgctgaaggctctgcaggacggccgt
gcctatggatctccatggtgtaataaacaaattactaggtgcctgattgaatgcagagat
gagtacaagtacaatgtggaagctgtggagctgctgatccgcaatcaccttgttaacatg
cagcagtatgaccttcacttggctcagtccatggagaatggcttgaactacatggctgtg
gcatttgccatgcaattggtaaagatcctcttggtggatgagagaagtgttgcccatgta
acagaggcagatctgtttcacacaattgagacactcatgaggattaatgctcattccaga
ggaaatgccccggaagggttaccccagctgatggaagtggtccgatcaaactatgaagca
atgattgaccgtgctcacggaggtcccaatttcatgatgcattcaggaatttcccaagcc
tctgagtatgatgacccaccaggtctgagggagaaggcagaatacctgctgagggagtgg
gtgaacctctaccattcagctgcagcaggccgtgacagtaccaaagcattctctgcattt
gttggacaggtagagcttttggaaagaaagatgcaccagcaaggaatcctgaaaaccgat
gacctgatcacccgctttttccgcctgtgcactgaaatgtgtgttgagatcagctatcgt
gctcaggctgagcagcagcataaccccgctgccaaccccactatgattcgagccaagtgc
taccacaatctggatgcctttgtgcgacttattgcactgctagtgaagcactctggggag
gcaaccaacacagttacaaagatcaacctcctgaataaggtccttggtattgtggtggga
gttcttctgcaagaccacgatgttcggcagagtgagtttcagcaacttccttaccatcgc
attttcatcatgctgctgttggaattaaatgctcctgagcatgtgctggagaccatcaac
ttccagacactcacagctttctgtaacacatttcacatcctgaggcctacaaaagctcca
ggttttgtttatgcctggctggaactgatctcccatcggatatttattgcaagaatgctg
gcacataccccacagcagaagggttggcctatgtatgcccagttactgattgatctcttc
aagtacttagctcctttccttagaaatgtggaactcaccaaacctatgcaaattctttac
aagggcactctgcgtgtgttgctggtcctgttgcacgatttcccagaatttctttgtgac
taccactatggtttctgtgatgtgatcccacctaactgtattcagctaaggaatctgatc
cttagtgccttcccacggaacatgaggcttccagaccctttcacccccaatctaaaggtg
gatatgttaagtgagattaatattgctccacgaatactcacaaatttcactggagtgatg
ccacctcagttcaagaaagacttggattcctatctcaaaacccgctctccggtcactttt
ttgtctgacttacgtagcaatctacaggtatcaaatgaacctggcaaccgctacaacatc
cagctgattaatgccctggtgctctacgtaggtactcaagctatcgcgcacattcacaac
aaaggcagcacaccctctatgagcaccattacccactcagctcacatggacatcttccag
aatttggcagtagacctggacactgaaggccggtaccttttcttgaatgcaatcgccaac
cagctgcgataccccaatagtcacacccactacttcagttgcaccatgctctacctgttt
gcagaggccaacactgaggctatccaggagcagatcactagggttctcttggaacgactg
attgtaaacaggcctcatccttggggtctccttattactttcattgagctgataaaaaat
ccagcattcaagttctggaaccatgagtttgttcactgtgccccagaaattgagaagttg
ttccagtcagttgcacagtgctgcatggggcagaagcaggcccagcaagtgatggaaggg
actggtgccagttaa
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integrated database retrieval system
