Strigops habroptila (Kakapo): 115615047
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Entry
115615047 CDS
T08851
Symbol
COL9A3
Name
(RefSeq) collagen alpha-3(IX) chain
KO
K08131
collagen type IX alpha
Organism
shab
Strigops habroptila (Kakapo)
Pathway
shab04510
Focal adhesion
shab04512
ECM-receptor interaction
shab04820
Cytoskeleton in muscle cells
Brite
KEGG Orthology (KO) [BR:
shab00001
]
09130 Environmental Information Processing
09133 Signaling molecules and interaction
04512 ECM-receptor interaction
115615047 (COL9A3)
09140 Cellular Processes
09144 Cellular community - eukaryotes
04510 Focal adhesion
115615047 (COL9A3)
09142 Cell motility
04820 Cytoskeleton in muscle cells
115615047 (COL9A3)
09180 Brite Hierarchies
09183 Protein families: signaling and cellular processes
00535 Proteoglycans [BR:
shab00535
]
115615047 (COL9A3)
Proteoglycans [BR:
shab00535
]
Extracellular matrix (ECM) proteoglycans
Others
115615047 (COL9A3)
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Paralog
Gene cluster
GFIT
Motif
Pfam:
Collagen
Motif
Other DBs
NCBI-GeneID:
115615047
NCBI-ProteinID:
XP_030358544
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Position
13:13506071..13541455
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AA seq
675 aa
AA seq
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MAGFSALGLLFLCQLLATTSAQRVGPQGPPGPRGPPGPSGKDGIDGEPGPPGLPGPPGPK
GAPGKPGAAGEAGLPGLPGVDGLTGNDGPPGPNGPPGDRGALGPAGPPGPAGKGLPGPPG
PPGPSGLPGGNGFRGPPGPFGLPGFPGPPGPPGPPGLPGAIPDGGGDLQCPALCPPGPPG
PPGMPGFKGHTGHKGEPGEVGKEGEKGNPGPPGPPGIPGSVGLQGPRGLRGLPGPIGPAG
DRGDIGFRGPPGIPGPPGKAGEQGNKGPQGFRGPKGDTGRPGPKGNPGARGLIGEPGMPG
KDGRDGAPGLDGEKGDAAPMGAPGEKGPNGLPGLPGRAGLKGSKGEPGSPGEMGEAGPSG
EPGIPGDVGIPGERGLPGPRGATGPLGLQGPVGAPGVRGFQGPKGASGEPGLPGPTGIRG
ELGDRGPTGVPGPKGNQGIAGADGLPGDKGELGPFGPPGQKGEPGKRGELGPKGAQGPNG
TAGVPGIPGHPGPMGRQGEQGVPGITGKPGPPGKEASEQHIRELCGEMISDQIAQLAANL
RKPLSPGMTGRPGPAGPPGPPGAVGSVGHPGPRGPPGYRGPTGELGDPGPRGDTGEKGDK
GPVGQGIDGPDGDQGLQGPPGVPGVTKNGRDGAQGEPGLPGDPGTPGAIGAQGTPGICDT
SACMGAVGVSTSKKS
NT seq
2028 nt
NT seq
+upstream
nt +downstream
nt
atggctggattctctgctcttgggcttctcttcctctgtcaactattagccacaacatca
gctcagagagtaggaccacaaggccctcctggaccacgaggaccccctggaccatctggg
aaggacggcatagatggagagccgggccctcctggtttgccaggcccaccagggccaaaa
ggtgcaccagggaagcctggagcagctggtgaagccggattgcctggccttcctggagtg
gatggtttaacaggaaatgatggcccacctggcccaaatgggcctccaggagaccgtggt
gcattgggacctgctgggccacctggacctgctggaaaaggactaccaggacctccaggg
cctccaggacccagtgggctcccaggtggaaatggatttcggggtcctcctggacctttt
ggtctgccgggattcccagggcctcctggaccacccggacctcctggtcttccaggcgca
attcctgatggcggtggggaccttcagtgcccagctctgtgcccaccaggtcctccaggt
cccccaggaatgccagggttcaagggacacactggtcacaaaggagaacctggtgaagta
ggaaaagaaggagagaagggtaaccctggccctccaggtcctccaggcatccccggcagc
gttggcctgcagggcccaagaggactaagaggacttcctggtccaataggtccagctggt
gacagaggtgacattggtttccgagggccgcctggaatcccaggacctccagggaaagct
ggagagcaaggaaacaaaggacctcaaggattcagagggcccaaaggagatactggtaga
cctggaccgaaaggaaacccaggggctcgtggactcataggagaacctggcatgcctggc
aaggatggacgggatggggctcctggactcgatggtgagaagggtgatgcagctcccatg
ggtgctcctggagagaaggggccaaatggacttcctggactgcctggaagagcaggtctt
aaaggctcaaagggtgaaccaggcagtcctggagagatgggagaggcaggtccctctgga
gagccaggcatccctggcgatgttggtattcctggtgagagaggtctgccgggcccccga
ggagcaactggaccacttggtctgcagggcccagtgggagcccccggtgtcagaggtttc
cagggtcccaaaggtgccagcggtgaacctggcctgcctggtccaactggaattcgtgga
gagttaggtgacaggggtcctactggtgttcctggtcccaaaggtaaccagggcattgct
ggagcagatggtctcccaggggacaaaggagaactgggtccctttggtccccctggccaa
aaaggagagccaggaaaaagaggagaacttggtccaaaaggtgcccaagggcctaatggg
acagctggagtaccgggaatcccaggacatccagggcccatgggccgtcagggagagcaa
ggcgttcccggcatcacaggaaaacctgggcctcctggcaaagaggccagtgaacaacat
ataagagaactctgtggggaaatgataagtgatcaaattgcacagttagctgctaacctg
aggaagcccttgtctcctggaatgacgggtcggcccggccccgctggtcccccaggtcca
cctggagctgtgggaagtgttgggcatcctggtcctcgtggtcccccgggatacagaggg
ccaacaggagagctgggtgatcctggtcccagaggtgacactggcgagaagggagacaag
ggacctgttggtcaaggtattgatgggcctgatggtgatcaaggacttcaaggaccacct
ggtgtacctggagtcactaaaaatggtcgtgatggtgctcagggtgaacccggtcttcca
ggggatcctggtactcctggtgctattggggctcagggaactccaggaatatgtgacacg
tcggcttgcatgggagctgtcggagtatcaacttccaaaaaatcataa
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