Strigops habroptila (Kakapo): 115619204
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Entry
115619204 CDS
T08851
Name
(RefSeq) CCR4-NOT transcription complex subunit 1-like isoform X1
KO
K12604
CCR4-NOT transcription complex subunit 1
Organism
shab
Strigops habroptila (Kakapo)
Pathway
shab03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
shab00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
115619204
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
shab03019
]
115619204
Messenger RNA biogenesis [BR:
shab03019
]
Eukaryotic type
mRNA surveillance and transport factors
mRNA cycle factors
P-body specific factors
115619204
mRNA degradation factors
3'-5' decay
Ccr4-NOT complex
115619204
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Not1
CNOT1_CAF1_bind
NOT1_connector
ARM_Cnot1
CNOT1_TTP_bind
DUF3819
CNOT1_HEAT
CNOT1_1st
Motif
Other DBs
NCBI-GeneID:
115619204
NCBI-ProteinID:
XP_030367106
UniProt:
A0A672TFN0
LinkDB
All DBs
Position
W:complement(18614284..18672981)
Genome browser
AA seq
2376 aa
AA seq
DB search
MNLDSLSLALSQISYLVDNLTKKNYRASQQEIQHIVNRHGPEADRHLLRCLFSHVDFSGD
GKSSGKDFHQTQFLIQECVLLITKPNFISTLSYAIDNPLHYQKSLKPSPHLFAQLTKVIK
LSKVQEVIFGLALLNSFSSDLRGFAAQFIKQKLPDLLRSYIDADVSGNQEGGFQDIAIEV
LHLLLSHLLFGQKGAFGVGQEQIDAFLKTLRRDFPQECCPVVLSPLLYPEKRDILMDRIL
PDSGGIAKTMMESSLADFMQEVGYGFCTSVEECRNIIMQFGVREVTAAQVARVLGMMART
HSGLTDGIPLQSISAPGSGIWSDGKDKSDGAQAHTWNVEVLIDVLKELNPSLDFKVVTYE
LDHLGFQIRDSKGLHIVVFGIQRGLGMEVFPVNAIYRPWKHAEGQLSFIQHSLINPDIFC
FADYPCHTVATDILKAPPEDDNREIATWKSLDLIESLLRLAEVGQYEQVKQLFSFPIKHC
PDMLVLALLQINTSWHTLRHELISTLMPIFLGNHPNSAIILHYAWHGQGQSPSIRQLIMH
AMAEWYMRGEQYDQAKLSRILDVAQDLKALSMLLNGTPFAFVIDLAALASRREYLKLDKW
LTDKIREHGEPFIQACMTFLKRRCPSILGGLAPEKDQPKSAQLPPETLATMLACLQACAG
SVSQELSEMILTMVANCSNVMNKARQPPPGVMPKGRPPSASSLDAISPVQIDSLAGMASL
SLGGSAAPHTQSMQGFPPNLGSAFSTPQSPAKAFPPLSTQNQTTGFSGIGGLSSQLPVGG
LTTGSLTGIGTGALGLPAVNNDPFVQRKLSTSGLNQSTFQQSKMKPSDLSQVWPEANQHF
SKEIDDEANSYFQRIYNHPPHPTMSVDEVLEMLQRFKDSNIKREREVFNCMLRNLFEEYR
FFPQYPDKELHITACLFGGIIEKGLVTYMALGLALRYVLEALRKPFASKMYYFGIAALDR
FKNRLKDYPQYCQHLASISHFIQFPHHLQEYIEYGQQSRDPPVKMQGSITTPGSIALAQA
QAQAQVPAKTPLAGQVSTIVTTSTTTTVAKTITITRPTGVSFKKDVPPSINTTNIDTLLV
ATDQTERIVEPPENVQEKIAFIFNNLSQSNMTQKVEELKETVKEEFMPWVSQYLVMKRVS
IEPNFHSLYSNFLDTLKNPEFNKMVLNETYRNIKVLLTSDKAAANFSDRSLLKNLGHWLG
MITLAKNKPILHTDLDVKSLLLEAYVKGQQELLYVVPFVAKVLESSIRSVVFRPPNPWTM
AIMNVLAELHQEHDLKLNLKFEIEVLCKNLALDINELKPGSLLKDKDRLKNLDEQLSAPK
KDVKQLEELPPITTTTASTTPATSATCTATVPPQPQYSYHDINVYSLGGLAPHITLNPTI
PLFQAHPQLKQCVRQAIERAVQELVHPVVDRSIKIAMTTCEQIVRKDFALDSEESRMRVA
AHHMMRNLTAGMAMITCREPLLMSIATNLKNSFATALRAASPQQRDMMEQAAAQIAQDNC
ELACCFIQKTAVEKAGPEMDKRLATEFELRKHARQEGRRYCDPVVLTYQAERMPEQIRLK
VGGVDPKQLAVYEEFARNVPGFLPTNDLTQPTGFLAQPMKQAWATDDVAQIYDKCMTELE
QHLQSIPHALAMNPQAQALRSLLEAVVVARNSRDAIAALGLLQKAVEGLLDATSGADADL
LLRYRECHLLVLKALQDGRAYGSPWCNKQITRCLIECRDEYKYNVEAVELLIRNHLVNMQ
QYDLHLAQSMENGLNYMAVAFAMQLVKILLVDERSVAHVTEADLFHTIETLMRINAHSRG
NAPEGLPQLMEVVRSNYEAMIDRAHGGPNFMMHSGISQASEYDDPPGLREKAEYLLREWV
NLYHSAAAGRDSTKAFSAFVGQMHQQGILKTDDLITRFFRLCTEMCVEISYRAQAEQQHN
PAANPTMIRAKCYHNLDAFVRLIALLVKHSGEATNTVTKINLLNKVLGIVVGVLLQDHDV
RQSEFQQLPYHRIFIMLLLELNAPEHVLETINFQTLTAFCNTFHILRPTKAPGFVYAWLE
LISHRIFIARMLAHTPQQKGWPMYAQLLIDLFKYLAPFLRNVELAKPMQILYKGTLRVLL
VLLHDFPEFLCDYHYGFCDVIPPNCIQLRNLILSAFPRNMRLPDPFTPNLKVDMLSEINI
APRILTNFTGVMPPQFKKDLDSYLKTRSPVTFLSDLRSNLQVSNEPGNRYNIQLINALVL
YVGTQAIAHIHNKGSTPSMSTITHSAHMDIFQNLAVDLDTEGRYLFLNAIANQLRYPNSH
THYFSCTMLYLFAEANTEAIQEQITRVLLERLIVNRPHPWGLLITFIELIKNPAFKFWNH
EFVHCAPEIEKLFQSVAQCCMGQKQAQQVMEGTGAS
NT seq
7131 nt
NT seq
+upstream
nt +downstream
nt
atgaatcttgactcgctctcgctggccttgtctcaaatcagctacctggtggacaattta
accaagaaaaactaccgagccagccagcaggaaatacagcatattgtgaataggcacggt
cccgaggcagacaggcatttgctacgctgcctattctcgcatgtggatttcagtggcgat
ggtaaaagcagtggcaaagattttcatcagactcaatttctgatccaggagtgtgtattg
ctgattacaaaaccaaactttatctcaacactgtcctacgccattgacaatccgttgcac
tatcagaagagtctaaagccttcaccccacttatttgcccaattgactaaagtcatcaaa
ttaagtaaagttcaagaggtgatttttggtcttgctttactgaactctttcagctcagat
ctgcgaggttttgctgcccagtttatcaaacagaaactcccagatcttttgcgctcttac
attgacgcggacgtcagtggaaatcaagaaggtggcttccaagatattgcaatagaggtc
ctgcaccttctcctctcccatctcctttttgggcagaagggagcctttggggtaggacag
gaacagattgacgctttcctcaaaacattacgtagagattttccccaggagtgttgtcct
gtggtactttcaccacttctataccctgaaaaacgggacattctaatggacaggatcctg
cctgattctggagggatagccaaaaccatgatggagagttctctggcagatttcatgcaa
gaagttggctatggcttttgtacaagtgtggaagaatgtcgcaacataatcatgcagttt
ggtgttcgggaagtcacggctgcccaggttgccagggttttggggatgatggctcgaact
cattcggggttgacggatggtattccattacaatctatttcggctcctggcagtgggatt
tggagtgatgggaaagataaaagtgatggagcacaagcccatacctggaatgtggaggtc
ttaattgatgttcttaaagagctgaatcctagcctggacttcaaagtagtaacctatgaa
ctggaccatctgggatttcagattcgtgacagcaagggcctgcatattgtggtgtttggc
atccagagagggctgggcatggaagtttttccagttaatgccatatacagaccttggaag
catgcagagggccagctctccttcattcaacattccctcataaaccctgacatcttctgt
tttgctgactacccttgtcatactgttgccacagacatcctgaaagcaccaccagaggat
gacaaccgggaaatcgctacatggaagagcttggatttgattgagtctctgttacgattg
gcagaagtgggacagtatgagcaggttaagcagctcttcagttttccgatcaagcattgc
ccagatatgttggtgttggccttactgcagatcaacacatcctggcataccttgcgccac
gaactcatctccacactcatgccaattttccttggcaaccatcccaactctgccatcatt
ttgcactatgcatggcatgggcaaggtcagtctccttcgattcgtcagctgatcatgcat
gcaatggcagagtggtacatgagaggggagcagtatgaccaggcaaaactctcacgcatt
ctcgatgtggcacaagacttgaaggccttgtcaatgctgctaaacggtactccattcgct
tttgttattgaccttgctgcacttgcctctcgacgggaatacctcaaacttgacaaatgg
ctcacagataaaattcgggagcatggggagcctttcatccaggcctgtatgactttttta
aagagaagatgtccgtctatcctgggtggccttgctccagaaaaagaccagcccaaaagt
gctcaacttcctccagaaaccttggcaactatgttggcatgtcttcaagcttgtgctggg
agtgtttctcaggagctgtcagagatgatcctcaccatggtagctaactgcagcaatgtc
atgaacaaggccaggcagccaccacctggagtcatgcccaaaggacgcccgcccagcgct
agcagcttggatgccatctctcctgtacagatcgactcacttgcaggaatggcatctctt
agcttaggtggctcagctgctcctcacacccagagcatgcaaggcttccctccaaacttg
ggctctgcattcagtactcctcagtcaccagcaaaagcattccccccgctttccacccaa
aaccagacaacaggtttcagtggcatcggaggactgtcttcacagcttccagtaggtggt
cttactacaggtagcctgactggcataggaactggagccttgggccttcctgcggtgaac
aatgaccccttcgtgcaaaggaagctgagcacatctggactgaaccagtctacattccag
cagagtaagatgaaaccttctgacttatctcaggtgtggccagaggctaatcagcacttt
agcaaagaaatagatgatgaggcaaacagctacttccagcgtatttacaaccatccacca
catccaaccatgtctgtagatgaggtcttggaaatgctgcagaggtttaaggactccaac
attaaacgggaacgagaagtgtttaactgtatgctgaggaacttgtttgaggaataccgc
ttctttccccagtacccagataaagagctgcacataacagcctgcctctttggtggtatc
atagagaaaggactggttacttatatggcattgggcctggccctgcgctatgttcttgaa
gccttacgaaagccttttgcgtccaaaatgtactattttggtattgctgcactagataga
tttaaaaatagactgaaggactatccccagtattgtcagcacttggcttctattagtcac
tttatacagttcccacatcacttacaagagtacatagaatatggacagcaatccagagat
cctcctgtgaagatgcagggttcaatcaccacccctggaagtattgcacttgcccaggct
caggcccaggcccaagttccagcaaaaactcctcttgctggtcaagtcagcactatagta
accacctcaaccaccaccactgttgcaaaaaccattacaatcacccgaccaactggagtc
agcttcaagaaagacgtgccgccttccattaatactaccaacattgatacactgttagta
gcaacagatcaaactgagagaattgtggaacctccagagaatgtccaggagaaaattgct
ttcatcttcaataatctgtctcagtcaaatatgacacagaaggttgaagagttgaaggaa
acagtgaaagaggagttcatgccttgggtatcgcagtatcttgtgatgaagagagtcagt
attgagcccaactttcacagcttatattcaaacttccttgacacacttaagaatccagag
tttaataaaatggttctgaatgaaacctacagaaatatcaaggtgttactgacatcagat
aaagctgcagccaacttctcagaccgttccttgttaaagaatcttggtcactggctggga
atgattacactggctaaaaataagcctatcttgcacacggatttggatgtgaaatcacta
ctgctggaagcatacgtaaagggacagcaggaattgctttatgtagtgccatttgttgcc
aaagtcttagaatccagtatcaggagtgtggtcttcaggcctccaaatccatggacaatg
gccattatgaatgttttagctgagctacatcaagaacatgatctaaaattgaatctgaag
tttgagattgaggtgctctgcaagaatcttgcactagacatcaatgagctgaagcctgga
agcctcctgaaagataaggatcgtctgaaaaatctggatgagcagctgtctgctccaaag
aaggatgtgaagcagctggaagagctaccacccatcacaacaactactgcttctacaact
ccagctaccagtgccacttgtacagccacggttcctccacagccccagtacagttaccat
gacatcaacgtctattctttaggagggttggctccacatattaccttaaatccaacgatc
ccgctgttccaagcccacccgcagttgaagcagtgcgtgcggcaggcgattgagagagca
gtgcaagagcttgtccatccagtggtggatcgatctattaagattgccatgactacttgt
gagcagatagtcaggaaggactttgcactggattcagaggagtcacgaatgcgtgtggct
gcgcaccatatgatgcggaacctgacagctgggatggccatgatcacctgcagggaacct
ttgctgatgagcatagctaccaacttgaaaaatagttttgctactgcactgagggcagcc
tccccacaacagagggacatgatggagcaggcagcagcccagatagcacaggacaactgt
gagctggcctgctgctttatccagaagactgctgtggaaaaggcaggtcctgagatggac
aagaggctcgcaactgaatttgagctcagaaaacatgctagacaagagggtcgtcggtac
tgtgatcctgttgtgttaacttaccaggctgagaggatgccagaacagatcaggttaaag
gttggaggtgtggacccaaaacagctggctgtttatgaagagtttgcacgcaatgtccct
ggcttcctgcctaccaatgacttaactcagcccacaggattcttggctcagcctatgaag
caagcttgggctacagatgatgtagcacaaatctatgacaaatgtatgacagaactggag
cagcacctgcagtccattccacacgccctggccatgaatcctcaagctcaagcgttgcgc
agcctcttggaggctgtagtagtggctcggaactcccgagatgctattgctgcacttgga
ctactgcagaaggctgtagagggcttactggatgccaccagtggagcagatgctgacctc
ctgcttcgctatcgtgagtgtcatctgcttgtgctgaaggctctgcaggatggccgtgcc
tatggatctccatggtgtaataaacaaattactaggtgcctgattgaatgcagagatgag
tacaagtacaatgtggaagctgtggagctgctgatccgcaatcaccttgttaacatgcag
cagtatgacctccacttggctcagtcaatggagaatggcttgaactacatggctgtggca
tttgccatgcagttggtaaagatcctgttggtggatgagagaagcgttgcccatgtaaca
gaggcagatctgtttcacacaattgagacactcatgaggattaatgctcattccagagga
aatgccccagaagggttaccccagctgatggaagtggtccgatcaaactatgaagcaatg
attgaccgtgctcatggaggtcccaatttcatgatgcattcaggaatttcccaagcctct
gagtatgatgacccaccaggtctgagggagaaggcagaatacctgctgagggagtgggtg
aacctctaccattcagctgcagcgggccgtgacagtaccaaagcgttctctgcatttgtt
ggacagatgcaccagcaaggaatcctgaaaactgatgacctgatcacccgctttttccgc
ctctgcaccgaaatgtgtgttgaaatcagctatcgtgctcaggctgagcagcagcataac
cccgctgccaaccccactatgattcgagccaagtgctaccacaatctggatgcctttgtg
cgacttattgcactgctagtgaagcactctggggaggcaaccaacacagttacaaagatc
aacctcctgaataaggtccttggtattgtggtgggagttcttctgcaagaccatgatgtt
cggcagagtgagtttcagcaacttccttaccatcgcattttcatcatgctgctgttggaa
ttaaatgctcctgagcatgtgctagaaaccatcaacttccagacactcacagctttctgt
aacacatttcacatcctgaggcctacaaaagctccaggttttgtttatgcctggctggaa
ctgatctcccatcggatatttattgcaagaatgctggcacatacaccacagcagaagggt
tggcctatgtacgctcagttactgatcgatctcttcaagtacttggctcctttccttaga
aatgtggaacttgccaaacctatgcaaattctttacaagggcactctgcgtgtgttgctg
gtcttgttgcatgatttcccagaatttctttgtgactaccactatggtttctgtgatgtg
atcccacctaactgtattcagctaaggaatctgatcctgagtgccttcccacggaacatg
aggcttccagaccctttcacccccaatctaaaggtagacatgttaagtgagattaatatt
gctccacgaatactcacaaatttcactggagtgatgccacctcagttcaagaaagacttg
gattcctatctcaaaacccgctctccggtcacttttttgtctgacttgcgcagcaaccta
caggtatcaaatgaacctggcaaccgctacaacatccagctgattaatgccctggtgctc
tacgtaggtactcaagctattgcgcacattcacaacaaaggcagcacaccctctatgagt
accattacccactcagctcacatggacatcttccagaatttggcagtagacctggatact
gaaggccggtaccttttcttgaacgcaatcgccaaccagctgcgataccccaacagtcac
acccactacttcagttgcaccatgctctacctgtttgcagaggccaatactgaggccatc
caggagcagatcactagggttctcttggaacgactgattgtaaacaggcctcatccttgg
ggtctccttattactttcattgagctgataaaaaatccagcatttaagttctggaaccat
gagtttgttcactgtgccccagaaattgagaagttgttccaatcagtcgcacagtgctgc
atggggcagaagcaggcccagcaagtgatggaagggactggtgccagttag
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integrated database retrieval system
