Sulfurospirillum halorespirans: SHALO_0479
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Entry
SHALO_0479 CDS
T04475
Name
(GenBank) DNA-directed RNA polymerase beta subunit
KO
K03043
DNA-directed RNA polymerase subunit beta [EC:
2.7.7.6
]
Organism
shal
Sulfurospirillum halorespirans
Pathway
shal03020
RNA polymerase
Brite
KEGG Orthology (KO) [BR:
shal00001
]
09120 Genetic Information Processing
09121 Transcription
03020 RNA polymerase
SHALO_0479
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
shal03021
]
SHALO_0479
03400 DNA repair and recombination proteins [BR:
shal03400
]
SHALO_0479
Enzymes [BR:
shal01000
]
2. Transferases
2.7 Transferring phosphorus-containing groups
2.7.7 Nucleotidyltransferases
2.7.7.6 DNA-directed RNA polymerase
SHALO_0479
Transcription machinery [BR:
shal03021
]
Prokaryotic type
Bacterial type
RNA polymerase
Core subunits
SHALO_0479
DNA repair and recombination proteins [BR:
shal03400
]
Prokaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TCR (transcription coupled repair) factors
DNA-directed RNA polymerase complex (RNAP)
SHALO_0479
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNA_pol_Rpb2_6
RNA_pol_Rpb2_2
RNA_pol_Rpb2_3
RNA_pol_Rpb2_7
RNA_pol_Rpb2_45
RNA_pol_Rpb2_1
Motif
Other DBs
NCBI-ProteinID:
AOO64270
UniProt:
A0A1D7TH44
LinkDB
All DBs
Position
481769..485926
Genome browser
AA seq
1385 aa
AA seq
DB search
MLNSLKSGNRLRVDFSKVPKKIDVPNLLQLQQKSYEQFLNVENLKEESGVEKVFKSIFPI
HDPQNRLTLEYVGSEVGKPRYTVRECMERGLTYSVSLKMNIRLILWDKDEKSGEKTGVKD
IKEQAIFIREIPLMTERTSFIINGVERVVVNQLHRSPGVIFKEEESPTVANKLIYNAQII
PDRGSWLYFEYDAKDTLFVRINKRRKVPITILFRALGYSKQDILKLFYPVLNIMIRENKF
LIEFSADNFLGRVDFDLKDEHGNLLLAAGKRLARKKAEKFIEDGIKFIEYPVEILVNRFL
SSPIIDKESGEVLYDTLTQLDEGKLAKIIEQKCEVIEIANDLASGVDDAIINSFIADTET
LKLLRQTEGIEDENDLAAIRIYKVMRPGEPVTKEAAKTFVKDLFFNSERYDLTKVGRMKM
NHKLGLSVPEYVTIMTSEDIIRTAKYLIKVKNGQGHIDDRDHLGNRRIRAIGELLANELH
AGLIKMQKAIRDKFTALSGSVEELMPHDLINSKMITSAISEFFSSGQLSQFMDQTNPLSE
ITHKRRLSALGEGGLVKERAGFEVRDVHPTHYGRICPVETPEGQNIGLINTLSMYAKVND
LGFVEAPYRKVENATITEEIIYITATQEEGLVIAPASTKINENNEIVEDLIEVRVDGETV
LIEKEKVDLIDLSSMMIAGVAASLIPFLEHDDANRALMGSNMQRQAVPLVQSEAPIVGTG
VEKIAARDSWEAIKAKRAGMVEKVDNKNVYILGEDEGGAFIDHYALQKNLRTNQNTTFTQ
KVIVRKGDMVEAGGVIADGPSMDQGELAIGKNSMVAFMPWNGYNYEDAIVMSERMIREDA
FTSVHIYEKEIEARELKDGVEEITKDIPNVKEEELAHLDDSGIVKVGTYIMPGMILVGKV
SPKGEVKPTPEERLLRAIFGEKAGHVVNKSLYATPSLEGIVVDVKIFTKKGYDKDPRAVQ
AYEQEKEILDREHHDKLLMLDREEMLRINALLLRNPLNEDQEISKNSYKKGGFIKAEDLH
NVNRFSINSIVKAFSNEIQDEYKDLKVYFQNEKKKLKEEHDEKLNIIEKDDILPSGVVKL
VKVYVATKRKLKVGDKMAGRHGNKGIVSNIVREVDMPYLKNGEIVDIVLNPLGVPSRMNI
GQILEVHLGLVGKRLGNQIEEIFKEKQGDWIKSLREKMISIADVAKLMDARNFMDTLNDE
QLLGYARDWSKGVRFASPIFEGVNTEEFAKLFEMAKIDTDGKTDLYDGMTGQKMHEKVNV
GYMYMLKLHHLVDEKVHARSTGPYSLVTQQPVGGKALFGGQRFGEMEVWALEAYGAAHTL
REMLTVKSDDVEGRILAYKALTRGENVPQTGIPETFYVLTNELKSLALDVEIYDEVEEDE
TTRTN
NT seq
4158 nt
NT seq
+upstream
nt +downstream
nt
atgttaaatagcctaaaatctggaaatcgcttacgagttgatttttccaaagtcccaaaa
aaaattgatgtaccaaatctactccaacttcaacaaaagagttatgaacagtttttaaat
gttgaaaatctcaaagaagagagcggcgtagagaaggtttttaaatctattttccctatt
catgatccccaaaaccgacttacgttggagtatgttggatcagaagttggaaaacctaga
tatacggttcgcgaatgtatggaacgcggccttacgtattctgtcagcttgaaaatgaac
attcgtcttatcttatgggataaagatgaaaaatccggtgaaaaaacgggtgtaaaagat
attaaagaacaagccatttttattcgtgaaattcctttgatgacggagcgaacttcgttt
atcatcaatggtgttgaaagagtggttgtcaatcagcttcacagaagccctggtgttatc
ttcaaagaagaagagagcccaacggttgcgaacaaactgatctacaatgctcaaattatt
cctgatcgtggttcttggttgtactttgagtacgatgcaaaagataccctctttgttaga
attaataaacgcagaaaagttcctattacgattttattccgtgcacttggttacagcaaa
caagatatcttaaaacttttttaccctgtgcttaacattatgattcgcgagaataagttc
ctcattgaattttcagccgataatttcttaggtcgtgtcgattttgatcttaaagatgag
catggtaaccttcttttagccgcaggcaaacgtttagcgcgtaaaaaagcagaaaaattt
attgaagatggtattaagtttatcgagtatcctgttgaaattttggttaatcgtttcctc
tcctctccaattattgataaagagagcggcgaagtactttacgatacattgacacaactg
gatgaaggaaaattggcaaaaattattgagcaaaaatgcgaagtgattgaaattgcgaat
gatcttgcaagtggtgtggatgatgcgatcattaactcttttattgcagacactgaaacc
cttaaattgcttcgtcaaaccgagggtattgaagatgagaatgacttagcggccattcgt
atctacaaagttatgagaccaggcgagccagtaaccaaagaagcagcaaaaacatttgta
aaagatcttttctttaactctgagcgttacgacttaaccaaagttggtcgtatgaaaatg
aaccataaacttggccttagtgtgcctgagtatgtgacgattatgacgagtgaagatatt
attagaacagcgaaatacttgatcaaagttaaaaatggtcaaggtcacattgatgatcgt
gatcacttgggtaatagaagaattagagcgattggtgagttacttgcaaatgaacttcat
gcaggtctcattaaaatgcaaaaagccattcgtgataaatttacagccctaagtggaagc
gttgaagagttaatgccacatgatttgattaactctaaaatgatcacttctgcaatttct
gagttcttctccagcggacagttatcacaatttatggatcaaacgaatccactcagtgaa
attacccataaaagaagactttctgctcttggtgagggtggtttggttaaagagcgcgct
ggctttgaagtccgtgacgttcacccaacacactacggaagaatttgtccggttgagaca
ccagagggccaaaacattggtttgatcaatacactttctatgtatgcgaaagtcaatgat
ctagggtttgtagaagcaccgtatcgtaaagttgagaatgcaactattaccgaagagatt
atttatatcacagcaacgcaagaagagggtttagtcattgcccctgcaagtactaaaatc
aatgaaaacaacgaaattgttgaagatttgatcgaggttagggttgatggtgagaccgta
ttgattgaaaaagagaaagtggacttaattgacctctcttctatgatgattgccggtgtt
gcagcctcgttaattccattcttggaacatgatgatgctaaccgtgcgcttatgggttca
aacatgcaacgtcaagccgtgccgttagtccaatcagaagctccaattgttggaacgggt
gttgagaaaattgcggctcgtgattcatgggaagcgattaaagcaaaacgtgctggtatg
gttgaaaaagttgataataaaaatgtttacattctaggtgaagatgaaggtggtgcattt
attgaccattatgcgcttcaaaaaaatcttagaaccaaccaaaatacaacgtttactcaa
aaagtaattgtgagaaaaggtgatatggtcgaagcgggtggcgttattgctgatggtcca
agtatggatcaaggtgagcttgctatcggtaaaaattcgatggttgcctttatgccatgg
aatgggtataactacgaagatgcgattgttatgtcagagcgtatgattcgtgaagatgcc
tttacgagtgttcacatctatgaaaaagagattgaagcacgcgaacttaaagacggtgtg
gaagagattaccaaagatattccaaatgttaaagaagaagagcttgcgcaccttgatgat
agtggtattgtcaaagtaggtacctatatcatgccaggtatgattcttgtcggtaaggtt
tcaccaaaaggtgaagtaaaaccaacccctgaagagagacttctacgtgcaatctttggt
gaaaaagcaggacacgttgttaataaatcattgtatgcaacgccatctttagaaggtatc
gttgtggatgttaaaatctttacgaaaaaaggttatgacaaagatccacgcgctgttcaa
gcgtatgagcaagaaaaagagatattagaccgtgaacatcatgataaactcttgatgtta
gatcgtgaagagatgttacgcatcaacgcgttgcttcttcgaaatccattgaatgaagat
caagagatcagtaaaaacagctataaaaaaggtggttttattaaagcggaagatcttcat
aatgtgaaccgtttttcaatcaactcgattgtaaaagcgttctcaaatgagattcaagac
gaatacaaagaccttaaagtctacttccaaaatgagaagaaaaaactcaaagaagagcac
gacgagaagcttaatatcattgaaaaagatgacattttgccaagtggcgttgtgaaactt
gttaaagtttatgtcgcaaccaaacgtaaactcaaagtgggcgataaaatggcaggacgt
cacggaaacaaaggtattgtctccaatatcgttcgtgaagtggatatgccttaccttaaa
aacggtgagattgttgatattgttctcaatccactgggtgttccaagtcgtatgaacatc
ggacaaattcttgaggttcacttaggacttgttggtaaacgtctgggcaatcaaatcgaa
gagatctttaaagagaagcaaggtgattggatcaagtcacttcgtgaaaaaatgattagc
attgctgatgttgcaaaactgatggatgcacgtaatttcatggatactttaaatgatgag
caacttttaggttatgcccgtgattggagtaagggtgtgcgttttgcaagcccaatcttt
gaaggtgttaatacagaagaatttgcaaaactctttgagatggcaaaaattgataccgat
ggaaagaccgatttatacgatggtatgactggtcaaaaaatgcatgaaaaagtcaacgtg
ggttacatgtacatgttaaaactccaccacttggttgacgaaaaagtgcatgcacgaagt
acaggaccatactcactggtcacacaacagccagtaggtggtaaagcactctttggtgga
caacgattcggtgagatggaggtttgggcgcttgaggcatacggtgctgctcatacccta
agagaaatgttaacagtcaaatcagacgacgttgaaggacgtattttagcttataaagca
ctcacacgaggtgaaaatgtccctcaaacaggaattcctgaaacattctatgttttaacg
aatgagttgaagtctttggctttagatgttgagatttatgacgaggtggaagaagatgaa
acgactagaaccaattga
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