Streptomyces harbinensis: HUT13_09300
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Entry
HUT13_09300 CDS
T07389
Symbol
rpoB
Name
(GenBank) DNA-directed RNA polymerase subunit beta
KO
K03043
DNA-directed RNA polymerase subunit beta [EC:
2.7.7.6
]
Organism
shar
Streptomyces harbinensis
Pathway
shar03020
RNA polymerase
Brite
KEGG Orthology (KO) [BR:
shar00001
]
09120 Genetic Information Processing
09121 Transcription
03020 RNA polymerase
HUT13_09300 (rpoB)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
shar03021
]
HUT13_09300 (rpoB)
03400 DNA repair and recombination proteins [BR:
shar03400
]
HUT13_09300 (rpoB)
Enzymes [BR:
shar01000
]
2. Transferases
2.7 Transferring phosphorus-containing groups
2.7.7 Nucleotidyltransferases
2.7.7.6 DNA-directed RNA polymerase
HUT13_09300 (rpoB)
Transcription machinery [BR:
shar03021
]
Prokaryotic type
Bacterial type
RNA polymerase
Core subunits
HUT13_09300 (rpoB)
DNA repair and recombination proteins [BR:
shar03400
]
Prokaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TCR (transcription coupled repair) factors
DNA-directed RNA polymerase complex (RNAP)
HUT13_09300 (rpoB)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNA_pol_Rpb2_6
RNA_pol_Rpb2_2
RNA_pol_Rpb2_7
RNA_pol_Rpb2_3
RNA_pol_Rpb2_45
RNA_pol_Rpb2_1
Peptidase_M23
Motif
Other DBs
NCBI-ProteinID:
QKV68960
LinkDB
All DBs
Position
complement(2099752..2103237)
Genome browser
AA seq
1161 aa
AA seq
DB search
MAASRNASTTSTTNGTSTAPLRVSFAKIKEPLEVPNLLALQTESFDWLLGNDAWKGRVEA
ALESGQDVPTKSGLEEIFEEISPIEDFSGSMSLTFRDHRFEPPKNSIEECKERDFTYAAP
LFVTAEFTNNETGEIKSQTVFMGDFPLMTDKGTFCINGTERVVVTQLVRSPGAYFDSTID
KTSDKDLFSAKIIPSRGAWLEMEIDKRDMVGVRIDRKRKQSVTVLLKALGWTSDQILEEF
GEYESMRATLEKDHTQGQDDALLDIYRKLRPGEPPTREAAQTLLENLYFNPKRYDLAKVG
RYKINKKLGGDEPLDAGVLTVEDIVATIKYLVRLHAGETETVAPSGRTIIVETDDIDHFG
NRRLRNVGELIQNQIRTGLARMERVVRERMTTQDVEAITPQTLINIRPVVASIKEFFGTS
QLSQFMDHTNPLSGLTHKRRLNALGPGGLSRERAGLEVRDVHPSHYGRMCPIETPEGPNI
GLIGSLAAFARINAFGFVETPYRKVVDGVVTDEVNYLTADEEDRFVIAQANAKLTDDYRF
AEARVLVRRRGGEIDYIPGSEVDYMDVSPRQMVSVATAMIPFLEHDDANRALMGSNMMRQ
AVPLINAEAPLVGTGMEYRCATDAGDVIRAEQNGVISDVSADYVTIANDDGTHVTHRLSK
FTRSNQGTCVNQKVLVEENERVVTGQVIADGPSTDRGEMALGKNLLVAFMPWEGYNYEDA
IILSQRLVQDDVLSSIHIEEHEVDARDTKLGPEEITRDIPNVSEEVLADLDDRGIIRIGA
EVEAGDILVGKVTPKGETELTPEERLLRAIFGEKAREVRDTSLKVPHGETGKVIGVRVFD
RDEGDELPPGVNQLVRVYVAQKRKITDGDKLAGRHGNKGVISKILPVEDMPFLEDGTPVD
IILNPLGVPSRMNPGQVLEIHLGWLASQGWKVEGTEEEWKQRLAAIGADEVAPGTNVATP
VFDGAREDEMAGLFESTIPNRDGDRLVLPTGKARMYDGRSGEPFPDPISVGYMYILKLHH
LVDDKLHARSTGPYSMITQQPLGGKAQFGGQRFGEMEVWALEAYGAAYALQELLTIKSDD
VTGRVKVYEAIVKGENIPEPGIPESFKVLIKEMQSLCLNVEVLSSDGMSIEMRDTDEDVF
RAAEELGIDLSRREPSSVEEV
NT seq
3486 nt
NT seq
+upstream
nt +downstream
nt
ttggccgcctcgcgcaatgcctcgacaaccagtacgactaatggcaccagcaccgcacca
ctgcgtgtctcttttgcgaagatcaaggagcctctcgaggttccgaaccttctggcgctg
caaaccgagagctttgactggctgctcggcaacgacgcctggaagggtcgcgtcgaggcc
gcgctggagagtgggcaggacgtccccaccaagtccggtctggaggagatcttcgaggag
atctccccgatcgaggacttctccgggtcgatgtccctgaccttccgcgaccaccggttc
gagccgccgaagaactccatcgaggagtgcaaggagcgcgacttcacctacgccgcgccg
ctcttcgtcaccgccgagttcacgaacaacgagaccggtgagatcaagtcccagacggtc
ttcatgggcgacttcccgctcatgaccgacaagggcaccttctgcatcaacggcaccgag
cgcgtcgtcgtgacgcagctggtccgttcccccggcgcctacttcgacagcacgatcgac
aagacgtcggacaaggacctcttctccgccaagatcatcccgtcccggggtgcctggctg
gagatggagatcgacaagcgcgacatggtcggcgtgcgcatcgaccgcaagcgcaagcag
tccgtcaccgtgctgctgaaggcgctcggctggacctccgaccagatcctggaggagttc
ggcgagtacgagtcgatgcgggccaccctggagaaggaccacacccagggccaggacgac
gcgctgctggacatctaccgcaagctccgcccgggcgagccgccgacccgcgaggccgcg
cagaccctgctggagaacctgtacttcaacccgaagcggtacgacctggccaaggtcggc
cggtacaagatcaacaagaagctgggcggcgacgagccgctggacgccggcgtcctcacg
gtcgaggacatcgtcgccacgatcaagtacctggtccggctgcacgccggtgagaccgag
accgtcgcccccagcgggcggacgatcatcgtcgagaccgacgacatcgaccacttcggc
aaccgccgtctgcgcaacgtcggcgagctgatccagaaccagatccgcaccggtctggcc
cggatggagcgcgtggtccgcgagcgcatgaccacgcaggacgtcgaggccatcacgccg
cagacgctgatcaacatccggccggtcgtcgcctccatcaaggagttcttcggcaccagc
cagctgtcgcagttcatggaccacaccaacccgctctccgggctgacccacaagcgccgt
ctcaacgcgctgggccccggtggtctgagccgtgagcgggccggtctggaagtccgtgac
gtgcacccctcgcactacggccgcatgtgccccatcgagacccccgaaggcccgaacatc
ggtctgatcggctcgctggcggcgttcgcgcggatcaacgccttcggtttcgtggagacc
ccgtaccgcaaggtcgtcgacggtgtggtcaccgacgaggtgaactacctgaccgccgac
gaggaggaccgcttcgtcatcgcgcaggccaacgccaagctgaccgacgactaccggttc
gccgaggcccgcgtcctggtgcgccgccgtggtggggagatcgactacatccccggcagc
gaggtcgactacatggacgtctcgccgcgccagatggtgtcggtcgcgaccgccatgatc
ccgttcctggagcacgacgacgccaaccgcgcgctcatgggctcgaacatgatgcgccag
gcggtgccgctgatcaacgccgaggctccgctggtcggcaccggcatggagtaccgctgc
gccaccgacgcgggcgatgtcatccgggccgagcagaacggcgtcatctccgacgtctcc
gccgactacgtgacgatcgccaacgacgacggcacccacgtcacgcaccggctgtcgaag
ttcacccgctccaaccagggcacctgcgtcaaccagaaggtcctggtcgaggagaacgag
cgcgtggtgaccggccaggtcatcgccgacggcccctccaccgaccgcggtgagatggcg
ctcggcaagaacctgctggtcgcgttcatgccgtgggagggctacaactacgaggacgcg
atcatcctctcccagcgtctggtgcaggacgacgtcctctcctcgatccacatcgaggag
cacgaggtcgacgcccgggacaccaagctgggccccgaggagatcacccgggacatcccg
aacgtctccgaggaggtgctcgccgacctggacgaccgcggcatcatccgcatcggtgcc
gaggtcgaggccggcgacatcctggtcggcaaggtcaccccgaagggcgagaccgagctg
acccccgaggagcggctgctgcgcgcgatcttcggtgagaaggcccgcgaggtgcgcgac
acctcgctgaaggtgccgcacggcgagaccggcaaggtcatcggggtgcgcgtcttcgac
cgcgacgagggcgacgagctgcccccgggcgtaaaccagctggtccgggtgtacgtcgcg
cagaagcgcaagatcaccgatggcgacaagctggccggccggcacggcaacaagggtgtc
atctccaagatcctccccgtggaggacatgcccttcctggaggacggcaccccggtcgac
atcatcctcaacccgctgggcgtcccctcccggatgaaccccggccaggtgctggagatc
cacctcgggtggctcgcctcgcagggctggaaggtggagggcaccgaggaggagtggaag
cagcggctcgccgcgatcggcgccgacgaggtcgcccccggcaccaacgtcgccaccccg
gtgttcgacggtgcccgcgaggacgagatggccgggctcttcgagtccaccatccccaac
cgcgacggcgaccggctggtgctgcccaccggcaaggcccggatgtacgacggccgctcc
ggcgagccgttcccggacccgatctcggtcggctacatgtacatcctcaagctgcaccac
ctggtcgacgacaagctgcacgcccgctcgaccggcccgtactccatgatcacccagcag
ccgctcggcggtaaggcccagttcggtggccagcgcttcggtgagatggaggtgtgggcc
ctggaggcgtacggcgccgcctacgcgctccaggagctgctgaccatcaagtccgacgac
gtgaccggccgcgtgaaggtctacgaggccatcgtcaagggcgagaacatccccgagccc
ggcattcccgagtccttcaaggtgctcatcaaggaaatgcagtcgctctgcctcaatgtg
gaggtgctgtcctcggacggtatgtccatcgagatgcgtgacaccgatgaggacgtcttc
cgcgcggcggaggagcttggcatcgacctgtcccggcgcgagccgagcagcgtcgaagag
gtctga
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integrated database retrieval system
