Shewanella sp. MR-4: Shewmr4_0192
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Entry
Shewmr4_0192 CDS
T00388
Name
(GenBank) DNA-directed RNA polymerase, beta subunit
KO
K03043
DNA-directed RNA polymerase subunit beta [EC:
2.7.7.6
]
Organism
she
Shewanella sp. MR-4
Pathway
she03020
RNA polymerase
Brite
KEGG Orthology (KO) [BR:
she00001
]
09120 Genetic Information Processing
09121 Transcription
03020 RNA polymerase
Shewmr4_0192
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
she03021
]
Shewmr4_0192
03400 DNA repair and recombination proteins [BR:
she03400
]
Shewmr4_0192
Enzymes [BR:
she01000
]
2. Transferases
2.7 Transferring phosphorus-containing groups
2.7.7 Nucleotidyltransferases
2.7.7.6 DNA-directed RNA polymerase
Shewmr4_0192
Transcription machinery [BR:
she03021
]
Prokaryotic type
Bacterial type
RNA polymerase
Core subunits
Shewmr4_0192
DNA repair and recombination proteins [BR:
she03400
]
Prokaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TCR (transcription coupled repair) factors
DNA-directed RNA polymerase complex (RNAP)
Shewmr4_0192
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNA_pol_Rpb2_6
RNA_pol_Rpb2_1
RNA_pol_Rpb2_45
RNA_pol_Rpb2_3
RNA_pol_Rpb2_7
RNA_pol_Rpb2_2
Motif
Other DBs
NCBI-ProteinID:
ABI37273
UniProt:
Q0HNU4
LinkDB
All DBs
Position
216244..220221
Genome browser
AA seq
1325 aa
AA seq
DB search
MLDIPYLLSIQLDSFKKFTDQDPTGERGLEAAFRSVFPIKSFSGNSELQYVSYKLGEPVF
DVKECQIRGVTYSAPLRVKLRMVLYDREAAAGTVKDIKEQEVYMGDIPLMTDNGTFVING
TERVIVSQLHRSPGVFFDHDRGKTHSSGKVLYNARIIPYRGSWLDFEFDPKDALFVRIDR
RRKLPATIILRALEYSTQEILDLFFERVEFKIKKDTLVMTLVPERLRGETASYDIKDAEG
SVLVEAGRRITARHIRQLEKTNTTELEVPVEYIVGKYAAQDYIDPDTGEVLVSANSEISL
EDLAKLSLAGIKELSTLYINELDHGAYISDTLRIDPTTNRLEALVEIYRMMRPGEPPTKD
AAEALFQNLFFSEERYDLSKVGRMKFNRRLSIPDDEGSGVLSKEDIVAVMKNIIHIRNGF
DEVDDIDHLGNRRIRSVGEMAENQFRVGLVRVERAVRERLSLGDLNELMPQDLINAKPIS
AAVKEFFGSSQLSQFMDQNNPLSEVTHKRRISALGPGGLTRERAGFEVRDVHPTHYGRLC
PIETPEGPNIGLINSLASFARTNSYGFLETPYRKVVDGVITDDVEYLSAIEEGRYVIAQA
NIEVDSQGRMVEEQIACRHKGESTFMRASDIQYMDVSPQQIISVAASLIPFLEHDDANRA
LMGANMQRQAVPTLKSEKPLVGTGIERTLAVDSGVVVAAKRGGVIDYVDASRIVVKVNED
ELRPGEAGIDIYNLTKYTRSNQNTCINQRPCCSVGEPVVRGDVLADGPSTDLGDLALGQN
MRIAFMPWNGYNFEDSILISERVAQEDRFTTIHIQELSCIARDTKLGSEEITADIPNVGE
SALSKLDESGIVYIGAEVKGGDILVGKVTPKGETQLTPEEKLLRAIFGEKASDVKDSSLR
VPNSVKGTIIDVQVFTRDGVEKDKRAIEIEEMHIAQARKDLGEEFKILEEGVLSRARNLL
LSAGFTEAQIAALPRKDVLVQVIDDETKQTELEQLAEQHEELKADFDKKFEIKRRKITQG
DDLAPGVLKIVKVYLAVKRTIQPGDKMAGRHGNKGVISKINPIEDMPYDEQGNPVDIVLN
PLGVPSRMNIGQVLEVHLGAAAKGIGNKIAAMLEDQREKGLAEVRSYIKQVYELGDEVQQ
RVDIDSFTDDELLRLANNLKGGIPVATPAFDGAKEKEIKQMLELAGLPTSGQLKLFDGRT
GNEFERPVTVGYMYMLKLNHLVDDKMHARSTGSYSLVTQQPLGGKAQFGGQRFGEMEVWA
LEAYGAAYTLQEMLTVKSDDVNGRTQMYKNIVDGNHQMQPGMPESFNVLLKEIRSLGINI
ELDQE
NT seq
3978 nt
NT seq
+upstream
nt +downstream
nt
gtgttggatattccttaccttttgtctattcagttagactcttttaagaagttcaccgat
caagatcctaccggtgagcgcggtttagaagccgccttccgtagcgtttttcccatcaag
agcttttctggtaattcagaactgcaatacgtcagctataagcttggcgagcctgttttt
gatgtgaaagagtgtcagatccgtggtgttacatattcagcgccactacgcgttaaatta
cgcatggtgttgtatgatcgtgaagcagcggccggcactgtaaaagatattaaagaacaa
gaagtctacatgggtgatatcccattaatgactgacaacggtacctttgtgatcaacggt
actgagcgtgtaatcgtatctcaattacaccgcagcccaggcgtgttctttgatcatgac
cgtggtaaaacccactcatcaggtaaggtgctgtataacgcacgtatcattccttaccgt
ggttcatggttagactttgaattcgaccctaaagatgcactgttcgtacgtattgaccgt
cgccgtaaattacctgcgaccatcattctgcgcgcattagagtattctactcaagagatc
ctcgatctgttcttcgaacgcgttgagttcaagatcaagaaagatactctggttatgacc
ttagtacctgagcgtctgcgtggcgaaaccgccagctacgacatcaaggatgctgaaggc
tctgtattggttgaagctggccgtcgtatcactgcacgccacattcgccaattagaaaaa
accaataccactgaactcgaagtgccagttgagtacatcgtgggcaaatatgctgcccaa
gattacatcgatccggacacgggtgaagtcttagtttctgctaacagtgaaatcagctta
gaagacttagcgaagttatcactggcaggcatcaaagagctaagcacgttatacatcaac
gagctagaccacggtgcttacatctctgacactctgcgtatcgatccaaccactaaccgc
ttagaagcgttagttgagatctaccgcatgatgcgtcctggtgagccaccaaccaaagat
gcagcagaagcgctgttccaaaacttattcttcagcgaagaacgttatgacctgtctaaa
gtaggtcgtatgaagttcaaccgtcgtctcagcattcctgatgacgaaggtagcggcgta
ctgtctaaagaagacatcgttgcagtaatgaagaacatcattcacatccgtaacggcttc
gacgaagtggacgatatcgaccacttaggtaaccgtcgaattcgttctgtgggtgaaatg
gctgaaaaccaattccgtgttggtctggtccgtgttgagcgcgccgtgcgtgaacgtctg
tcattaggcgatctaaacgagctgatgccacaagacttaatcaacgctaagccaatttct
gccgcagtgaaagagttcttcggttcttctcagctgtcacaattcatggaccaaaacaac
ccgctgtcagaagtaacgcataagcgtcgtatttctgctcttggcccaggtggtttgacc
cgtgaacgtgcaggcttcgaagtccgcgacgtacacccaacgcactatggtcgtttatgt
ccaattgagacccctgaaggtccaaacattggtctaatcaactcattagcgagctttgcc
cgtactaactcttacggcttcttagaaaccccataccgcaaagtggtagacggtgtgatc
actgacgatgtggaatacttgtcggcgattgaagaaggtcgttatgtgattgcacaggcg
aacatcgaagttgactcacaaggtcgcatggttgaagaacagatcgcatgtcgtcacaaa
ggtgaatctacctttatgcgtgcgtctgacattcaatacatggacgtatcgccacaacag
atcatctctgttgctgcgtctctgatcccgttcttagaacacgacgacgcgaaccgtgca
ttgatgggtgcgaacatgcaacgtcaagcggtaccaacactgaaatcagagaagcctctg
gtcggtacgggtattgagcgcacgttagctgtggactccggtgtagttgttgctgccaaa
cgtggcggtgtgatcgattacgttgatgcgagccgtatcgttgttaaagttaatgaagac
gagctgcgcccaggcgaagcaggtatcgacatttacaacctgactaagtacacccgttct
aaccaaaacacttgtatcaaccaacgtccatgttgttcagttggtgagccagtggttcgt
ggtgacgtgttagcagacggtccgtctactgacttaggtgacttagcccttggtcagaac
atgcgtatcgcattcatgccttggaacggttacaacttcgaagactcgatcttaatttct
gagcgtgttgcacaggaagaccgtttcaccactatccacattcaagagctgtcttgtatc
gctcgtgataccaagctgggtagtgaagaaatcactgctgacattccaaacgtaggtgaa
tctgctctgtcgaaactcgacgagtcaggtatcgtttacatcggtgcagaagtgaagggt
ggtgacattctggttggtaaagttacgccaaaaggcgagacgcaactgactccagaagag
aagttactacgcgctatcttcggtgagaaagcgtctgatgtgaaagacagctcactgcgt
gtacctaactctgttaaaggtaccatcatcgacgttcaggtatttacccgtgacggcgtt
gagaaagacaaacgcgccattgaaatcgaagaaatgcacattgcccaagctcgtaaagac
ttaggcgaagagttcaagatccttgaagaaggcgtattgagccgtgcgcgcaacttatta
ttaagtgccggtttcactgaagcacaaatcgcagcattgccacgtaaagatgtattggtt
caagttattgacgatgaaaccaaacaaactgagcttgagcaattagctgaacagcatgaa
gagctgaaagcagacttcgataagaagtttgaaatcaaacgtcgcaagatcacccaaggt
gatgacttggcaccaggcgtactgaagatcgttaaggtttacttagcggttaaacgtact
atccaaccaggtgacaagatggcgggtcgtcacggtaacaagggtgttatctctaagatt
aacccaattgaagacatgccgtacgacgagcaaggcaaccctgtggacatcgtattgaac
ccgctaggcgttccatcacgtatgaacatcggtcaggttcttgaagttcacttaggtgct
gctgctaaaggtattggtaacaagattgctgccatgctggaagatcagcgcgagaaggga
cttgcagaagttcgtagctacatcaagcaagtgtacgaattaggtgacgaagtgcagcag
cgcgttgacatcgattcattcactgacgatgagttactgcgcttagcgaacaacctgaaa
ggcggtatcccagttgctacgccagccttcgacggtgctaaagagaaagagatcaagcag
atgcttgagcttgcaggcttgccaacctctggtcagctgaaattatttgatggtcgtacc
ggtaacgaatttgagcgtccagtaactgtaggttacatgtacatgctcaaactgaaccac
ttagttgacgataagatgcacgcccgttctaccggttcgtacagcttagtgactcaacaa
cctctgggcggtaaagctcagttcggtggtcagcgtttcggggagatggaagtgtgggca
ctcgaagcatacggtgccgcttatacgcttcaagaaatgctcaccgtgaaatcggatgac
gttaacggtcgtactcagatgtataagaacatcgtcgacggtaaccatcagatgcagcct
ggcatgccagagtccttcaacgtattactgaaggagatccgttcactcggtatcaacatc
gagttggatcaggaataa
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