Shewanella sp. FDAARGOS_354: CEQ32_05350
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Entry
CEQ32_05350 CDS
T04944
Name
(GenBank) excinuclease ABC subunit UvrB
KO
K03702
excinuclease ABC subunit B
Organism
shf
Shewanella sp. FDAARGOS_354
Pathway
shf03420
Nucleotide excision repair
Brite
KEGG Orthology (KO) [BR:
shf00001
]
09120 Genetic Information Processing
09124 Replication and repair
03420 Nucleotide excision repair
CEQ32_05350
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
shf03400
]
CEQ32_05350
DNA repair and recombination proteins [BR:
shf03400
]
Prokaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
GGR (global genome repair) factors
CEQ32_05350
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
SHDIR (short-homology-dependent illegitimate recombination)
Supressor
CEQ32_05350
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
UvrB_inter
UvrB
Helicase_C
UVR
ResIII
DEAD
AAA_30
AAA_22
Ish1
Kinesin
Motif
Other DBs
NCBI-ProteinID:
ASF14501
LinkDB
All DBs
Position
complement(1172340..1174361)
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AA seq
673 aa
AA seq
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MSESVFQLESQFAPAGDQPTAIAKLVDGLESGLACQTLLGVTGSGKTFTIANVIAKLGRP
TIIMAPNKTLAAQLYGEMKEFFPNNAVEYFVSYYDYYQPEAYVPASNTFIEKDASVNAHI
EQMRLSATKALLERKDVVLIASVSAIYGLGDPDSYLKMLLHLRQGDTMGQRDILKRLSEL
QYTRNDIELQRGTFRVRGEVIDIFPADSDRYAIRVELFDDEIERLSEFDPLTGQIIKRIA
RTTVYPKTHYVTPREKILEATELIKQELRERKQYLLDNNKLIEAQRIHERVQYDIEMMVE
LGYCSGIENYSRYLSGRAPGEGPPTLLDYLPADGLLVIDESHVTVPQIGAMYKGDRSRKT
TLVEYGFRLPSALDNRPLKFEEFEQLMPQTIYVSATPNPYELDKSGGEIVEQVVRPTGLL
DPELEVRPVGIQVDDLLSEVAKRVAVNERVLVTTLTKRMSEDLTEYLDEHGVKVRYLHSD
IDTVERVEIIRDLRLGKFDVLVGINLLREGLDMPEVSLVCILDADKEGFLRSERSLIQTI
GRAARNVNGKVILYADRITNSMAKAMGETERRREKQRAYNLEHGIVPKGVVKRITDVMDV
DDGRESEKGYGQASLGRVAEPKAKRYHADAAQLSHDIDKLEKQMHEHARNLEFEQAAALR
DEVKRLRELLISA
NT seq
2022 nt
NT seq
+upstream
nt +downstream
nt
gtgtcagaatctgtttttcagcttgaatcccaatttgcccccgcaggtgaccagccaaca
gccattgctaaattggttgatggcctcgaatcaggccttgcttgccaaaccctattaggg
gtgacgggctctggtaagacgttcaccatcgccaatgtgattgccaagcttgggcgaccg
accattattatggcgccaaacaaaacactcgccgcacagttatatggcgagatgaaagag
tttttccccaataatgcggtggaatattttgtctcctattacgattactatcagcctgag
gcgtatgtccccgcatctaatacctttatagaaaaagatgcctcggtaaacgcccatatt
gaacaaatgcggctctcggccaccaaagccctgctggagcgcaaggatgtggtgctgatt
gcctcggtatcggcgatttatggtcttggcgatcctgactcttacctaaagatgctattg
cacctgcgccagggcgataccatgggacagcgggacattcttaagcgcttgagtgaattg
caatacacccgtaatgatatcgagttgcagcgcggcacctttcgtgttcgcggcgaagtg
attgatattttccctgccgactcagatcgctacgcgattcgggtggagctatttgacgat
gaaattgaacgcttaagtgagtttgatccgttaactgggcagattatcaaacgtatcgct
cgcactacagtgtaccctaagacccactatgtgacgccgcgggaaaagatccttgaagcc
accgagctgattaagcaagagctgcgtgagcgcaagcaatatctgctcgacaataataag
ttgattgaggcgcagcgcatccacgaacgggtgcaatatgatatcgagatgatggtggag
ctaggctattgctccggcattgaaaactactcccgctatttatccggacgcgcccccggt
gaggggccaccaacgctgctcgattacttacccgctgatggtttattggttatcgacgaa
tcccatgtcaccgtgccacaaattggtgccatgtataagggtgaccgttcccgtaaaacc
accttggtggaatatggctttcgtttgccctcggcgttggataaccggccattgaagttt
gaagagtttgagcagttaatgccgcagacgatttatgtgtcggcgacgccaaatccctat
gaattggataagagtggcggcgagattgttgaacaagttgtgcggcccacaggattgctc
gaccctgagcttgaggtgcgccccgttggcattcaagtggacgatttgctctctgaggtc
gctaaacgggttgcggtaaacgagcgggtgttagtcaccacgttaactaaacgtatgtcg
gaggatttaaccgaatacctcgatgagcatggcgtcaaagtccgttatttgcattcggac
attgataccgtggagcgggtggagatcatccgcgatctgcgcctgggtaagtttgatgtg
ctggtcgggattaacttgctgcgcgaaggcttagatatgccggaagtctcactcgtctgt
attttggatgcagataaggaaggttttttacgttcggagcgttcgctgatccagaccatt
ggtcgcgccgcgcgtaacgttaatggtaaggtgatcctctatgccgatcgcatcaccaac
tcgatggcaaaggcgatgggcgaaaccgagcgccgccgagagaaacagcgagcctacaac
cttgagcatggcattgtgccaaaaggcgtggtcaagcgtattaccgatgtgatggatgtg
gacgatggcagagagtctgaaaagggttatggtcaagcatcccttggcagagtcgctgag
cctaaagccaaacgttatcatgcagatgctgcgcagctgagccatgatatcgacaagctc
gagaagcaaatgcatgaacatgcgcgtaacttggagtttgaacaggcggcggccttgcgt
gatgaggtgaaacgcttaagggaattactgatcagcgcataa
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