Slackia heliotrinireducens: Shel_10740
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Entry
Shel_10740 CDS
T00981
Name
(GenBank) metal dependent phosphohydrolase
KO
K18682
ribonucrease Y [EC:3.1.-.-]
Organism
shi
Slackia heliotrinireducens
Pathway
shi03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
shi00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
Shel_10740
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
shi03019
]
Shel_10740
Messenger RNA biogenesis [BR:
shi03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Ribonucreases
Shel_10740
BRITE hierarchy
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Ortholog
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Gene cluster
GFIT
Motif
Pfam:
RNase_Y_N
HD
KH_1
HDOD
KH_KhpA-B
ZT_dimer
YtxH
KH_2
POX
FUT8_N_cat
LapA_dom
Motif
Other DBs
NCBI-ProteinID:
ACV22109
UniProt:
C7N5C4
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Position
1228496..1230037
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AA seq
513 aa
AA seq
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MDYVIVILVLIVGIAAGVAIGLIVSRNMANSSTRRAADEAKRLIDDAERQADTLRREAVV
EAKDEVLKMKQEAQAENKERMREVRAAENRINQREESLDRRVESLDAREHQLSSMQGQVE
RRERDVAKAMEEVNVRLEEVAGMSPQEAKEELLDSLRDEVTHESAAIIRDAEQRTKAEAD
RNAREILSLAIQRVAADHTAETTVKTIHIPSDDLKGRIIGREGRNIRSFEQLTGVNLLID
DTPECVTISCFDPVRREIGRITMENLIADGRIHPARIEEMFSKAERLVNQQVQEAGEQAT
FDCGIHDLHPELVRTLGRLRYRTSYGQSVLNHSLEVAYLCGVMASELGLDPAPAKRAGLL
HDIGKAIDHEVEGPHALIGGDLARRFGERPEIVHAIEAHHNDIETNSVIDVLVQAADAVS
AARPGARKESLESYIKRLEKFEEIANAHPGVERTYAMQAGREIRVMVAPEQVDEAASVVL
AHDIAKQIEDEMQYPGQVKVVVIRESRAIDYAK
NT seq
1542 nt
NT seq
+upstream
nt +downstream
nt
atggactacgttatcgttatcctcgtgctcatcgtcggcatcgccgccggtgtggctatc
ggtttgatcgtctcccgcaacatggcaaactcttccacccgtcgcgctgccgatgaggcc
aaacgcctgatcgacgatgcggaacgacaggccgacacgctgcgccgcgaggcagtcgtc
gaagccaaggatgaagttctgaaaatgaagcaggaggcccaggccgaaaacaaggagcgc
atgcgcgaagtgcgcgctgccgagaaccgcatcaaccagcgtgaggaatccctcgaccgc
cgcgtggagagcctggatgcccgtgagcatcagctgtcctctatgcagggtcaagttgaa
cgccgcgaacgcgacgtcgccaaggctatggaagaggtcaacgtccgcctggaggaggtt
gccggcatgtctccgcaggaagccaaggaagagcttctcgactccctgcgcgacgaggtc
acccatgaaagcgccgccatcatccgcgatgccgagcagcgcaccaaggccgaggccgac
cgcaatgcccgcgagatcctgagtctggccatccagcgtgtcgctgccgaccacacggct
gaaaccacggtcaagaccatccacatccccagcgatgatctgaagggtcgcatcatcggt
cgcgaaggccgcaacattcgctcttttgagcagctgacgggcgtgaacctgcttatcgac
gacacgccggagtgcgtcaccatctcgtgcttcgacccggttcgtcgcgagattggccgc
atcaccatggagaacctcatcgccgacggccgtatccatccggcccgcatcgaggaaatg
ttctccaaggctgagcgtctggtgaaccaacaggtgcaggaggccggcgagcaggccacc
ttcgattgcggcatccatgatctgcatccggagctggtccgcaccttgggccgtctgcgc
taccgcacctcctacggccaaagcgtcctcaaccactcgctggaagtcgcgtacctgtgc
ggcgtcatggcttccgagctcggtctggaccctgctcccgccaagcgcgcaggtttgctg
cacgacatcggcaaagccatcgaccatgaggtcgaaggcccccacgctctcatcggcggc
gatcttgcccgtcgttttggggaacgtcccgaaatcgtgcacgccatcgaggcgcatcac
aacgacatcgaaaccaacagcgtcatcgacgttctggttcaggccgccgacgccgtttct
gcggcacgtcccggcgcccgcaaggaaagcctcgagagctacatcaagcgtctcgagaag
ttcgaggagattgcaaacgcccatcccggcgtcgagcgcacctatgccatgcaggccggt
cgtgagatccgcgtcatggttgctcccgaacaggtcgacgaggccgcttccgtggtgctt
gcgcacgacatcgccaaacagatcgaagacgaaatgcagtaccccggccaggtgaaggtc
gtggttatccgtgaaagccgcgccatcgactacgccaagtaa
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