Salvia hispanica (chia): 125185430
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Entry
125185430 CDS
T09851
Name
(RefSeq) CCR4-NOT transcription complex subunit 1 isoform X1
KO
K12604
CCR4-NOT transcription complex subunit 1
Organism
shis
Salvia hispanica (chia)
Pathway
shis03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
shis00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
125185430
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
shis03019
]
125185430
Messenger RNA biogenesis [BR:
shis03019
]
Eukaryotic type
mRNA surveillance and transport factors
mRNA cycle factors
P-body specific factors
125185430
mRNA degradation factors
3'-5' decay
Ccr4-NOT complex
125185430
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Not1
CNOT1_CAF1_bind
CNOT1_TTP_bind
ARM_Cnot1
DUF3819
CNOT1_HEAT
NOT1_connector
Motif
Other DBs
NCBI-GeneID:
125185430
NCBI-ProteinID:
XP_047937913
LinkDB
All DBs
Position
4:complement(53371875..53390237)
Genome browser
AA seq
2401 aa
AA seq
DB search
MVTFSSKLSGQIRFLLQDVNDSNSDSVFQELCNYTMHGMEASILLLQACFDHIDIYSRDL
KDMKLQPIFASIFKYLLDKPNFSSILSESLRSKAINEDLLLNLSDALHLSVPEKIGVGLV
LSNSEDHDTRMCGKNFCMSQITELCANPVAFESSKLIHHILVFLSRSEGLSKHVDSFMQM
LFLVQPKDGAQFVIIPFLHDELLEDNFFRNSELMNEGGEEDFDAILAEMEKEISMADVMC
ELGYGCTANVAQCKEMLSLFLPLTDATIAKILGMVARTYVGLDDRQNVFATFRSALGGNS
VLDMPSLNSWNVDVLVDSIKQLALGTNWINVMENLDHEGFYIPNEAAFSFFMSVYKHACQ
EPFPLHAICGSVWKNVEGQLSFLKYAVSAPPEVFTFAHSERQLSYDDAVPGHTLQSGPNR
AWSCHDLLVVLCQLSEMGHASLVRYVLESPLNNFPEVLLLGMAHVNTAYNLIQNEVASAV
LPVALKKTSASGLLYTLWHVNRNLLLRGLIDSVNVDPDSVNRIFDAFQEIKVLPQVLDMF
PFYLGIRLAVLASNREIMDLESWLSARLVSSKDAFYEECIRFLKDVQIGDQDISPNHHHP
SGSLLNMYLEACPTVLKALQSHSGVLSSNHLSEEIEKLDVSHMRSNSRMRSAGGSDAAAD
GYADDIETEANAYFHQMFSGNLSIDAMIQMLTRFKESPEERKKSIYECMIANLFEEYNFF
SKYPERQLRIAAVLFGSLIKHQLVTHLTLGIALRAVLDALRKPADSKMFSFGTKALEQFV
DRLIEWPQYCNHILQISHLRAAHSDLVEFIERALNRISAAHSEPDVGHSTTNDHHHGLTP
SSAPTTEPAGSPFSLIGPGSTQSGLPVSPSIPLPQRPPSSLDERKPSTTIFNHMKQSQSS
SAQPVTAPSSEMPTLQKSHSGAVLSVQSASPGFPRSSRSTSARFGSALNIETLVAAAERR
ETPVEVPASEAQDKISFIINNLSAANVEAKAKEFSEILNPQFYPWFAQYMVMKRASIETN
FHDLYLKFLDKVNLKPLFREIVQATYENCKVLVGSDLIKSSVEERSLLKNLGSWLGKITI
GKNQVLRAREIDPKSLIIEAYEKGLMIAVIPFTSKILEPCSNSIAYQPPNPWTMAILGLL
AEIYAMPNLKMNLKFEIEVLFKHLSVDLKDVTPTSLLKEKVREVEGNPDFSNKDVGSSQP
PIMNEVKPGIISTLNHVEMPLDVAASPLPGGHSRIMSQQYAAPLHHSSGTLTEDEKLSLG
FSDQLPSAQGLLQGQAQYAVNQVPVPAANIEQQVVVNKKLQAYGLHLHFQSVLPIAMDRA
VKEIVSSIVQRSVSIATQTTKELVLKDYAMEPDETLTRNAAHLMVARLAGSLAHVTCKEP
LRGSISTQLRNSLQGFNISTDLSEQAVQLVTNDNLDLGCVLIEQAATDKAVQSIDGDIAQ
QLSIRRKHRESVGASFFDASLYAPGQMSILPEALRPKPGQLSHSQQRVYEDFARFPGQNR
STQSSNTAPVGLSASSGGGGLSRQFASTSGQISGSIYSPGLISTGIGAVPQTLEMGSDEI
EPFGSQVPTSLPSTHISVGDGPQTSESDTIPSLPHTSTTDVQVVEPSSSAKELGNAAQPT
NATLSSERPGTNVTEPLITTGDALEKYQTISEKLENQLANEAKEVEIQAVIAEVPAVILR
CISRDEAALAVAQKAFKGLYENASNCAHVDAHLAILAAIRDVSKLVVKELTSWVLYSEED
RKFNRDITIGLIRSELLNLGEYNVHMAKLLDAGRNKAATEFAISLIQTLVMNDSKVISEL
HNLVDALAKLAARPGSPESLQQLIEIAKNPANAGNLSPLAVGKEEIARTPRDKKLLEQTT
VPGTSREEFSVTELVDFDPAGFSEQVSALFTEWYQICELPGANDAACARHVSLLQQRGLL
KGDEMTDRFFRRIMELSVSHCLSSESLSFLAIDMYAKLVFSVLKFFPADQGSSKLSLLPK
VLAVTVKFILKDAEERKASFNPRPYFRLFVNWLLDLCSLDPVFDGANFQVLTGLANAFHA
IQPLKVPGFSFAWLELVSHRSFMPKLLTANAQKGWPYFQRLLVDLFQFMEPFLRKVQLGE
PVHFLYKGTLRVLLVLLHDFPEFLCDYHFSFCDVIPPSCIQMRNIILSAFPRNMRLPDPS
TPNLKIDLLPEITQSPRILSEVDAALKAKQIKNEVDEYLKTRQQGSAFLTELKQKLLLSP
NEVERAGTRYNVPLINSLVLYVGMQAQQLQAGHTQTIANISAFLVSAALDIFQTLIMDLD
TEGRYLFLNAVANQLRYPNNHTHYFSFILLYLFHESNQETIQEQITRVLLERLIVNRPHP
WGLLITFIELIKNPRYSFWSRSFTRCASEIEKLFESVSRSFGGPKPVDDSLVSAGIPDNL
H
NT seq
7206 nt
NT seq
+upstream
nt +downstream
nt
atggttacgttctcctccaagctatcgggccagattaggtttctgctgcaggacgttaac
gattccaactccgattcggttttccaagaactatgcaactatacaatgcatggaatggag
gcgagcatattacttctgcaagcctgtttcgaccacatcgatatttattccagggatttg
aaggatatgaagctgcaaccgatatttgcttcaatattcaaatatttattggataaacct
aactttagttcaatattaagtgagtcactgcggtctaaagccatcaatgaagacctactg
ctgaatctttctgatgctttacacttgtcggtacctgagaaaattggagtagggcttgtt
ttgtctaattctgaagatcatgataccaggatgtgcggaaagaatttctgcatgagtcag
atcacagagttgtgtgccaatcctgttgcatttgagtcttccaagttaattcaccatatt
cttgtgtttctcagtcggtctgaaggcctctctaagcatgttgattcattcatgcaaatg
ttatttctcgtgcaaccgaaggacggggcccagtttgtcatcataccttttcttcatgat
gaactacttgaagataacttcttcagaaactcagagttgatgaatgaggggggtgaagag
gattttgatgccattctagcagaaatggagaaagaaattagtatggctgatgtaatgtgt
gagctaggatatgggtgtactgccaatgtggctcaatgcaaagaaatgttgtcgcttttc
ttaccgctcactgatgccacaattgcaaagattcttggaatggttgccagaacttatgta
ggtcttgatgacaggcaaaatgtctttgctacattccgctctgcccttggtggtaacagt
gtcctggatatgccatctttgaattcttggaatgttgacgtccttgtggattcaatcaag
caacttgctctgggaactaactggattaatgtcatggagaatctggatcacgagggattt
tatatccccaatgaggctgctttttcatttttcatgtctgtctacaagcatgcatgccag
gaaccattccctctccatgctatttgtggatctgtttggaagaatgttgagggtcagcta
tcttttctaaaatatgcagtctctgcaccacctgaagtctttacgtttgctcattctgaa
aggcagctgtcctatgatgatgctgtgcctggacatacattgcagtctggacctaatcgt
gcttggtcatgtcatgacctgctggtggttctgtgtcagctatctgagatgggtcatgca
agtttagtgagatatgtccttgaatctcctcttaataacttcccagaagtattgcttctt
ggaatggcccatgttaatactgcgtataatcttatccaaaatgaggtcgcatccgctgtg
ctcccagtggctcttaaaaagacttctgcaagtggcttattgtacactctgtggcatgtt
aatcgaaacttgttgctacgtggacttatagattccgtgaatgttgatccagacagtgtc
aataggatttttgatgctttccaggaaataaaggttcttccacaagtactagatatgttt
cctttttaccttggcattcgcttggctgtacttgcatctaatagagaaatcatggacctt
gaaagctggttgagtgctcgattagtgtccagtaaagatgctttctatgaggaatgcatc
aggtttttgaaggatgttcagattggagatcaggacatctctcccaatcaccatcaccct
tctggttctcttttgaatatgtacttggaagcttgtcccactgtcttaaaggcacttcag
tctcattctggtgtgctttcttctaatcacttgtctgaggaaattgaaaaattggatgtc
tctcatatgcgttctaattcaagaatgagaagtgctgggggttctgatgctgctgctgat
ggttatgctgatgacattgaaacagaagcaaatgcatacttccatcaaatgttctctggt
aatctatctatcgatgctatgattcaaatgcttacccgcttcaaggaatctccagaagaa
aggaaaaagtcgatatacgagtgcatgattgctaatctatttgaggaatacaattttttc
tcgaagtaccctgaaaggcagctgaggattgcagcagtactttttggatcactcatcaag
catcaactagtgactcaccttacgctgggcattgctttacgagctgttttagatgcttta
aggaagcctgcagattcaaaaatgttctcctttgggaccaaggcattggagcagtttgtg
gaccgtctcattgagtggccacaatactgcaatcatatcctgcaaatatctcatttgcgg
gctgctcattcagaccttgtagaattcatagagagggcacttaacaggatctcagctgct
catagtgaacctgatgttggccatagtacaactaatgatcaccatcatggtctcactcca
tcttctgctccaactacggagcctgcaggctcgccattttctctaattggaccaggcagc
acacagtctggattgcctgtttctccttcaattccactaccacagagaccaccgagttct
cttgatgaaaggaaaccttctacgactatctttaatcacatgaagcaatcacaatcatct
tctgcgcaacctgttactgctccttcaagcgaaatgcctacccttcagaagtcacacagc
ggtgctgttctgtcagtacaatctgcttcaccgggctttccacggtcttctagatcaacc
tcagcaagatttggctctgctttaaacattgagacccttgttgctgctgctgagagaaga
gaaactcccgtagaggttccagcatcagaagctcaggacaagatatcttttattataaat
aacttgtctgctgcaaatgttgaggctaaagctaaagagtttagtgaaattctaaatcct
caattctatccgtggttcgcacagtatatggttatgaagagggcaagcattgaaacaaat
tttcatgatttgtacttgaagtttcttgataaagtaaatttgaaacctttgttcagagag
attgtacaggccacttatgaaaactgcaaggttcttgtcggatcagaccttataaagtct
agtgtggaagaacgatcactgctgaaaaatttaggaagctggcttgggaagattacaatc
ggcaaaaatcaagttctaagggcacgggagatagatccaaaatctttgattatagaggca
tatgaaaagggacttatgatagctgttattccttttacctcaaagattctggaaccctgt
tcgaacagtattgcatatcagcctcccaacccttggacaatggcgattcttggattgctt
gctgagatttatgcaatgccaaatttgaagatgaatctcaaatttgagattgaggtcctg
tttaagcatttaagtgttgaccttaaggatgttacacctacttctcttctgaaggaaaaa
gtccgagaagttgaaggtaatcctgatttctcaaataaggatgtcggatcttcacaacca
ccaataatgaatgaggtgaaacctggaataatttcgacattgaaccatgttgagatgccc
cttgatgttgctgcctctccccttcctggtggacactctcgtataatgtctcagcagtat
gctgctccgctccatcattcatctggaactttaacggaggatgagaagctaagcttgggg
ttttctgaccagctgccttctgctcaaggccttctacaaggacaggcacaatatgcagtt
aatcaggttcctgtaccagcagctaatattgaacagcaagttgttgtcaataaaaagctt
caggcttatggcttacacttgcatttccagagtgtacttccaattgccatggatagagct
gttaaagaaatagtgtccagtatcgtgcaacgtagtgtttctattgcgactcagacaact
aaggaacttgtcttgaaggattatgccatggagcccgatgagacccttacacgaaatgcg
gcacatttgatggtggcaaggttggcgggaagtcttgctcatgtaacctgcaaggaacct
ttacgtggttcgatatcaacccagctcagaaactcacttcagggcttcaacatatcaact
gatctatcagaacaagcagttcaactggtgactaatgataatcttgacctaggctgtgtg
ttgattgaacaagctgcaactgataaggcggttcagagcattgatggggacatagctcaa
caactttctatcaggaggaagcatagagaaagtgttggtgctagtttttttgatgctagt
ctttatgcaccgggtcaaatgagcattttaccggaagcccttcgtcctaaaccaggccag
ctgtcacactcccagcagcgagtttatgaggattttgctcggtttccaggacagaatcgg
tccacccagagctcaaatactgctccagttggcctctctgcttcatcaggaggtggtggt
ttgtccaggcaatttgcatctacatctggccaaatcagtggtagcatatactcgcctggc
cttattagcactggaattggtgctgtgccccagacattggaaatgggctcggatgagatt
gaaccttttggatcccaggttcctacaagtcttccttcaacacatatttcagttggtgat
ggtcctcaaacttctgaaagtgacaccattccttcattgcctcatacctcgactactgat
gtgcaagtggtggaaccttctagctctgcaaaagaacttggaaatgctgcacagcctact
aatgcaactctatcttccgagcgtcctggaactaatgtcacagagcctttgataaccact
ggggatgcattggaaaagtaccagactatctcagagaagctagaaaatcagttggctaat
gaagcgaaagaggttgagattcaggcagttattgctgaagttcctgcagtcatccttagg
tgcatcagccgagatgaggcagccttggctgtcgcccagaaggctttcaagggcttgtat
gaaaatgcatcaaattgtgctcatgttgatgctcaccttgcaatcctggcggctatacgt
gatgtcagcaagcttgtggttaaggagctcactagctgggttttgtactctgaggaggat
aggaagttcaatagagatatcactataggtcttattcgcagcgagttattaaaccttggg
gagtataacgttcacatggcaaagcttcttgatgctgggagaaacaaggctgcaactgaa
tttgccatttctctcatacaaactttggttatgaacgattctaaagtgatatcagagctt
cacaatcttgtagatgctctggcaaagcttgctgcaagacctggatccccggagtcatta
caacagctgattgaaatagctaagaacccagctaatgctggaaatttgtctcctttggct
gttggtaaagaagaaattgcacgaacccctagggataaaaagttgctggaacagaccact
gttcctggaacaagcagggaagaattcagtgtgacagaattggtggattttgatcctgct
ggtttctctgaacaggtatccgcattatttactgaatggtaccaaatatgcgaactgccc
ggagcaaatgatgcagcttgtgctcgccatgtttcactcttgcaacagagagggcttctt
aaaggagatgagatgacggatcggtttttccgcaggattatggaactctctgtttcacat
tgtttatcatcggagtcactttcatttctcgctatcgacatgtatgcgaagttagttttc
tcggttctgaagtttttccctgcggatcagggttccagtaaactttcacttctgcccaag
gttcttgctgttacggttaaatttattctaaaagatgccgaggagagaaaggcgtcattt
aatccaaggccctactttaggttgtttgttaattggctgcttgatttgtgttcattggat
ccagtatttgatggtgcaaattttcaggtattgactggtcttgcgaatgccttccatgca
attcagcctctaaaggtcccagggttcagctttgcatggcttgagttggtaagtcataga
agttttatgccaaagttgctcactgcaaatgcacaaaaaggatggccatatttccagaga
ttactggtggacttgttccagttcatggagccattcctgaggaaagttcaacttggggaa
ccggtgcattttctatacaaggggacactacgagtgttgttggtgctacttcacgatttt
ccggagttcctttgtgattatcatttcagcttttgtgatgtcataccccccagctgcata
caaatgcggaatataatccttagtgcatttcctcgcaatatgaggcttccagatccttct
actcctaacttaaagattgaccttctgcctgagattactcaatcaccgagaattctttca
gaggttgatgccgcacttaaagcaaagcagatcaagaacgaagtggatgagtatcttaag
actaggcaacaaggatctgcatttctcactgagttgaagcagaagcttcttctctcgcca
aatgaagttgaacgtgctgggactcgttacaatgttcctcttattaattcccttgttctt
tatgttgggatgcaggctcaacaactgcaagcgggtcatactcaaaccatagctaatata
agtgcattcttagtgagtgctgctctggatatttttcagacgttaataatggatcttgat
acagagggccgatacctcttccttaatgctgttgccaaccaattgcgttatccaaacaac
cacacccattacttctccttcattcttctttatctatttcatgaatcaaaccaggaaacg
atccaggagcagattaccagagtattattagaacgtttgattgttaataggcctcatcca
tggggtcttctgattacgtttattgagctgataaagaatccgaggtacagcttctggagt
agatcgtttacgaggtgtgcctctgagatcgaaaagttgtttgaatcagtatcgaggtca
tttggaggccctaaacctgttgatgacagtcttgtatccgccgggatacccgacaatctt
cattaa
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