Salvia hispanica (chia): 125194622
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Entry
125194622 CDS
T09851
Name
(RefSeq) CCR4-NOT transcription complex subunit 1-like
KO
K12604
CCR4-NOT transcription complex subunit 1
Organism
shis
Salvia hispanica (chia)
Pathway
shis03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
shis00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
125194622
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
shis03019
]
125194622
Messenger RNA biogenesis [BR:
shis03019
]
Eukaryotic type
mRNA surveillance and transport factors
mRNA cycle factors
P-body specific factors
125194622
mRNA degradation factors
3'-5' decay
Ccr4-NOT complex
125194622
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Not1
CNOT1_CAF1_bind
DUF3819
Motif
Other DBs
NCBI-GeneID:
125194622
NCBI-ProteinID:
XP_047948828
LinkDB
All DBs
Position
6:8419175..8434432
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AA seq
1856 aa
AA seq
DB search
MVSFSSKLSRQISFLLYNLNDSNSDSVFQELCNYTMDGMEGSILLLQACFDHLNIYSSKL
KDIKLQPIFASIFKHVLNKPNFSSILSESLQSKAINDELLQNLSDALHLSVPDKIGVGLA
MSNSEDHDTRMCGKNFCLSQITELCANPVAFESTEIIQHILVLLSRSEGLSKHLDSFLQM
LSLVQLKAETQFVITPFLHDELRGDNFFRLDEGSEDDFDAILAEMEKEISIADVMCELGY
GCTANLSQCKEMLSLFLPLTDATVAKILGTIARTYAGLDNSQNVYATFRSALGGNSVLDL
PSLNSWNVDVLVDSIKQLAPGINWIYVMENLDHEGFYIPNEAAFSFFMSIYKHACQEPFP
LHTICGSIWKNVEGQLSFLKNAVAAPPEVFTFAHSERQLSYDDAVRGHTLHSGPNRAWSC
HNLLVVLCQLSEMGHASFIRSVIESPLNNFPEVLLLGMAHVNVGDIRNDLDFLFCFLYGL
LFISMKPAQSSSVQPVIAPLNGTPTLPKSRSGALLSIQSASSSFSRSSISTSAKSVSALN
IETLVAALERRETPIEVIGYTCTIMMNDDLEMTYQSTMYMEAYYVELPVGQRKRVVMRRV
SIEPNFQDLYLKFLDKVNLKPLNKEIVQATYENCKALLGSELIKSSVEERSLLKNLGCWL
GKITIGRNKVLRAREMDLKALIIEAYEKGLMIAVIPFTSKILVPCSSSIAYGPPNPWTMG
ILGLLAEIYVMPNLKMNLKFEIEVLFKHLSVDFRNVTPTYLLKDIVREVEGNPDFLNKDV
GSSQPPRMNEVKSGIISKINQVEIPLDVAASPHPAGHSCIMPQYAAAVPHSSGTLTEVEK
LVSLGYSDQLPSAQGLLQGQSQYAVNQFPVLAANIEHQVVVNKRLQAYGLHLHFQSVLPV
AMDRAVKEIVSGIVQRSVSIATDTTKELVLKDYAMEPDETLIRNAAHLMVARLAGSFAHV
TCKEPLRGSLSSQLRSSLQGLAIASDLLEQAFQLVINDNLDLGCVLIEQAATEKAVQTID
GEMDQQLSIRRKHRDSVGVAFYYASLYAQGQMSILPEALRPKPGHLSHAQQRVYEDFARF
PGQNCSTQSSNAVPVGHSASSEGGLSRQFASTSGKMSGSIYSSGLVSTGFGAMPQALEID
SDEIAPVRCQIPASVPSSHISIGDGPQTPENDIIPSFLSALDTGMLQIEPSHSAKEPGNA
SHPTNATLASEHPGTNVSEPLVTTGDTLCNYQTISEKLENQLANEAKEVEIQLTARPESA
ESLQQLIEIAKNPANAGNLSPSAVGKEEIARTSRDKKLVEPGLHGTSREEFSVTELMDFD
AAGFSEQVFGLFAEWYQICELPGANDVACARHVSLLQQRGLLKGDDMTDRFFRRIMELSV
SHCLSSEDINSSPCPSTQGQPLSFLAIDIYAKLVFSVLKFCPVDQGSRKLSLLPKVLALT
VKFILKDAEERKASFNPRPYFRLFVNWLLDLCSLDPVFEGGNFQVLTTLANSFHAIQPLK
VPGFSFAWLELVSHRSFMPKLLAANAQKGWPYIQRLLVDLFLFMEPFLRKAELDEPVKFL
YKGTLRVLLVLLHDFPVFLCDYHFSFCDVIPPRCIQMRNIILSAFPRNMMLPDPSTPNLK
IDLLAEINHTPRILSDVDTALKAKQIKDDVDEYLKTRQQGSPFLTELKQKLLISTSDAAC
AGTRYNAPLVNSLVLYVGLQAIQQLQARKPPHAQTMGNMSAFLESAALDVFQTLIMDLDR
EGRYLFLNAIANQLRYPNNHTHFFSFVLLYLFAESNQELIQEQITRVLLERLIVIRPHPW
GLKMTFIELIKNPRYNFWSRSFTRCTPEIEKLFKSVSWSFGGSKPVDDSVVPDTLH
NT seq
5571 nt
NT seq
+upstream
nt +downstream
nt
atggttagcttctcctccaagctttcccggcagattagctttctactgtacaacttgaac
gattccaactccgattcggttttccaagagctatgcaattatacaatggatggaatggag
ggtagcatattactgctccaagcctgttttgaccacctcaatatttattcaagcaagtta
aaggatataaagctgcaaccgatatttgcttcaatattcaaacatgttttgaataaacct
aactttagttcaatattaagtgagtcacttcagtctaaagccatcaatgacgaactactg
cagaatctttctgatgctctacacttgtcagtacctgataaaattggagttggtcttgct
atgtctaattctgaagatcatgataccaggatgtgtggaaagaatttctgtttgagtcag
attacggagctgtgtgccaatcctgttgcatttgagtcaactgagataattcagcatatt
cttgtgttacttagtcggtctgaaggcctctctaagcatttagattcattcttgcaaatg
ttatctcttgtgcaactgaaggccgagactcaatttgtcatcacaccttttcttcacgat
gaactacgtggagataacttcttcagactggatgaggggagtgaagatgattttgatgct
attctagcagaaatggagaaagaaattagcattgctgatgtaatgtgtgagctaggttat
gggtgtactgctaatttgtctcagtgcaaagaaatgttgtctcttttcttgcctcttact
gatgccacagttgcaaagatacttggtacgattgccagaacttatgcaggtcttgataac
agccaaaatgtctatgctacattccgctctgcccttggtggtaatagtgtactggatctg
ccatctttgaattcttggaatgttgatgtccttgtagattcaatcaagcaacttgctccg
ggaattaactggatttatgtcatggagaatctggatcatgagggattttatattcctaat
gaggcagcattttcattttttatgtctatctacaagcatgcgtgccaggaaccattccct
ctccatactatttgtggatctatttggaagaatgttgagggtcagctatcttttctaaaa
aatgcagtcgctgcaccacctgaagtttttacctttgctcattctgaaaggcagctgtcc
tatgatgatgctgtgcgtgggcatacattgcattctggaccaaatcgtgcttggtcatgt
cataatctgctggtggttctgtgccagctatctgagatgggccatgcaagtttcattaga
tctgtcattgaatctcctcttaataacttccctgaagtattacttcttggaatggcccat
gttaatgtaggtgacatcagaaatgatcttgattttttgttctgctttttatacggttta
ttgtttattagcatgaagccagcacaatcttcttctgtgcagcctgtaattgctcctttg
aacggtacacctacccttcctaagtcacgcagtggcgctttgctgtcaatacaatctgct
tcgtcgagtttttcacggtcgtctatatcaacctcagcaaagtctgtctctgcattaaac
attgagaccctagttgctgcacttgagagaagagaaactccaatagaggtgattggatat
acttgtacaattatgatgaatgatgatttagagatgacctaccaatccaccatgtacatg
gaagcttattatgtagaactgccagtgggacaacgaaaaagggtggttatgaggagggta
agcattgaaccaaattttcaagatttgtacctgaagtttcttgataaagtaaatttgaaa
cctttgaacaaagagattgtgcaagccacttatgaaaactgcaaggctctcttgggatca
gaacttataaaatctagtgtggaagaacgatcactgctgaaaaatttaggatgctggctt
gggaagattactatcggaagaaataaagttctaagggcacgagagatggatctaaaagct
ttgattatagaggcatatgaaaagggactcatgatagctgttattccttttacctcaaag
attcttgtaccctgttcgagcagtattgcatatgggcctccaaacccttggacaatggga
attcttgggttgcttgctgagatttatgtaatgccaaacttgaagatgaatctcaaattt
gagattgaggttctgtttaagcatttaagtgttgacttcaggaatgtcacacccacttat
cttctgaaggacatagttcgagaagttgaaggtaatcctgattttttgaataaggatgtt
ggatcttcacagccaccaagaatgaatgaggtgaaatctggaattatttcgaaaattaac
caagttgagataccccttgatgttgctgcctctccccatcctgccggccactcttgtatt
atgcctcagtatgctgcagctgtccctcattcatctggaactttgactgaggttgagaag
ctagttagcttgggatattctgaccagcttccttctgctcaaggccttttacaaggacag
tcacaatatgcagttaatcagtttcctgtactagcagctaatattgaacaccaagtggtt
gtcaataagaggcttcaggcttatggcttacacttgcactttcagagtgtacttccagtt
gccatggatagagctgttaaagaaatagtgtctggtattgtgcaacgcagtgtttctatt
gcgactgacacaactaaggaacttgtcttgaaggactatgccatggagcctgatgagact
cttatacgaaatgcagcacatttgatggtagcaaggttggcaggaagttttgctcatgta
acctgcaaggaacctttacgtggttcattatcaagccagctcagaagctcacttcagggg
ttagccatagcaagtgatcttctagaacaggcatttcaactggtgatcaatgataatctg
gacctaggctgtgtgttgattgaacaagctgcaactgagaaggcagtccaaaccattgat
ggggaaatggatcaacaactttctattaggagaaagcatagagacagtgttggtgttgct
ttttattatgctagcctttatgcccaaggtcaaatgagtattttacctgaggcccttcgt
cctaagccaggccacctgtctcatgcacaacagcgagtttatgaggattttgctcggttc
ccaggacagaattgttccacccagagctcaaatgcagtcccagttggccactctgcttca
tcagaaggtggattgtcccgacaatttgcatctacttctggcaaaatgagtggtagcatt
tactcatctggccttgttagcactggatttggtgctatgccccaggcactggaaattgac
tctgatgagatagcgcctgttcgatgccagattcctgcaagtgttccctcatctcatatt
tcaattggcgatggtccacaaactccagaaaatgacatcattccttcattcctttctgcg
ttggacactggtatgctacagatagaaccttcccattctgcaaaagaacctggaaatgct
tcacatcctactaatgcaactctggcttctgagcatcctgggacaaatgtctctgagcca
ttagtaaccactggtgacacattgtgtaactaccagactatctcagagaagctagaaaat
cagttggctaatgaagcgaaagaggttgagattcagcttactgcaagacctgaatccgca
gagtcattacaacagctgattgaaatagctaagaaccctgctaatgctggaaatttgtct
ccttcggctgttggtaaagaagaaattgcacgaacctccagggacaaaaagttggtggaa
cctgggcttcatgggacaagcagggaagaattcagtgtgacagaattgatggattttgat
gctgctggtttctctgaacaggtatttgggttgtttgctgaatggtaccaaatatgtgaa
cttcctggagcaaatgatgtggcttgtgctcgccatgtctcactcttgcaacagagaggg
ctgcttaaaggagatgatatgactgatcgatttttccgcaggattatggaactctctgta
tcacattgtctatcatcggaggatataaattctagcccttgcccttctactcaaggacaa
ccactatcattcctcgctattgatatatatgcgaagttagttttctcagttctgaagttt
tgccctgtggatcaaggctcgaggaaactttcacttctgccaaaggttcttgctcttacg
gtgaaatttattctaaaagatgctgaggagagaaaggcgtcatttaatccaaggccctac
tttaggttgtttgttaattggctgcttgatttgtgttcattggatcctgtatttgaaggt
ggcaattttcaggtattgactactttggcgaattccttccatgcaattcagcctctcaag
gtcccagggttcagctttgcgtggctcgagttggttagtcatagaagttttatgccaaag
ctgcttgctgcaaatgcacaaaaaggatggccatatattcagaggttactggtggacttg
ttcctgttcatggaaccattcctgaggaaggctgaacttgatgaaccggtgaaatttctg
tacaaaggaacactccgagtgttgttggtgctacttcatgattttccagtgttcctttgt
gattatcatttcagcttttgtgatgtcatcccccccagatgcatacaaatgcggaatata
atccttagcgcatttcctcgcaatatgatgcttccagatccttctactcctaacttaaag
attgaccttctggcggagattaatcatacgccgagaattctttcagatgttgataccgca
cttaaagcaaagcagatcaaggatgatgtggacgagtatcttaagactaggcaacaagga
tccccgtttctcactgagttgaagcagaagcttctaatatctacaagtgatgctgcttgt
gccgggactcgttacaatgctcctttagttaactcccttgttctttatgtggggctgcag
gctattcagcaactgcaagcgagaaaaccccctcatgctcaaaccatgggtaatatgagt
gcattcttggagagtgctgctctggatgttttccaaacgttaataatggatcttgataga
gagggccgataccttttcctgaatgccattgccaaccaattgcgctatccaaataaccat
acccattttttctcctttgttcttctttatctgtttgctgaatcaaaccaggaattgatc
caggagcagattactagagtcttgttggaacgtttgatcgtcattaggcctcatccatgg
ggtcttaagatgacatttattgagctaatcaagaatccgaggtataacttctggagtagg
tcgtttacgaggtgcacacctgagatcgagaagttgtttaaatcagtatcttggtcgttt
gggggctccaaacctgttgatgacagtgtagtacctgacacccttcattaa
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