Salvia hispanica (chia): 125195944
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Entry
125195944 CDS
T09851
Name
(RefSeq) tetratricopeptide repeat protein SKI3 isoform X1
KO
K12600
superkiller protein 3
Organism
shis
Salvia hispanica (chia)
Pathway
shis03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
shis00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
125195944
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
shis03019
]
125195944
Messenger RNA biogenesis [BR:
shis03019
]
Eukaryotic type
mRNA degradation factors
3'-5' decay
Ski complex
125195944
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
TPR_1
TPR_2
TPR_11
TPR_14
TPR_19
TPR_16
TPR_17
TPR_8
TPR_6
TPR_9
TPR_CcmH_CycH
TPR_15
TPR_12
BTAD
Motif
Other DBs
NCBI-GeneID:
125195944
NCBI-ProteinID:
XP_047950202
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All DBs
Position
6:complement(47738871..47746288)
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AA seq
1178 aa
AA seq
DB search
MALEEEEDCDFSALKQLRESASSNPNDAAVRFNLGVVLWEKGERRPELRHEAVEHFMVAA
KLNPQNAATFRYLGHYYARVSPEPQRALKCYQRAVALNPDDSDAGEAICDLLDEGGQDNL
MIAVCREASEKSARAFWAFRRLGYLQAHLKNWAEAIQSLQQAIRGFPTSADLWETLGLAY
GRMGMFTAALKSYGRAVELDDSRIFALVESGNISLMLGSFRKGIEQFQQALIISPHNVSA
NYGLASAFLGLAKECVNSGAFRWGASLLEEAAEVSMHVTSLAGNFSCSWKLHGDIQLMYA
RCNPWTEEARPGQVDEISFKSSVSTWKRTCFIASRNASRSYQRALHLAPWLANAYIDVAI
AADVSLSFKESPKDDWSVWPIAEKMCFGGILLEGYNEEFWVALACLSSNAALKQHALVRG
LQLDVSLAVAWAYLGKLYRLEGEKKLAQQAFDRARSIEPSLALPWAGMSADADVRKFEQN
EAYECCLRAVQISPVADFQIGLAKLAMHSSCLSSSEVFAAIQQALLRIPHYPESHNLNGL
VCESRSDYQGAVASYRLARYALKYFADETSESHSDNISINLARSLCMAGNASEAVEECEH
LRQKGQLDTVGLHIYALCLRRLGKNDMALSATRSLASSILTMEENLAAASISFICRMLYS
ISGQESAITSILKMPKQLFSSSKISFIVSAIHVLDSNNQLEAVVSSSRSFVTSREDIISM
HMLITVGKLLKSGNENSLGIQKGVDHLRKAVHMFPNSSVLRNLLGYLLLSSKERGYLSLA
TRCSSLDLSDYQKDDGLKSAYEIVGAGNVACYAIGSPNQKFPLPTCRRQCHSGSGAIQVL
QKYLHQEPWNFNARYLLTLNCLQKTRAENFPQHGCHVVERLTAVALSDQNFSIKDVSRQY
QNFQLLLCAAEVNLQQGNNTECFRLVRSALGASLHSNHLFFAHLLLCRAYASEDDFVNLR
KEYKYCLELGTYSHIGWICLKFIESRYGLQDDSTVLALKFEDCSKDLKTSWNVWTALFSL
VQGLISISLGDFVAAEEFFSQACCVADDESSFFLCHGAICMELARQKCESQYITRAIRSL
KKAKDTSSDPLPLVSLLLGQAEASLGSKEKWLVNLRDEWFSWPPENRSAELLFQMHLLSR
ESSHGGSTMRWILRAIHMNPSCSRYWKFLLKEYDHSLT
NT seq
3537 nt
NT seq
+upstream
nt +downstream
nt
atggctctggaagaagaagaagactgcgatttctccgctttaaagcaattgcgagaatca
gcgagttccaatccgaatgacgccgctgttcgtttcaatctgggggtggtgctatgggag
aagggggagagaaggccggaactgaggcatgaagcggtggagcatttcatggttgcagct
aaactcaatccgcagaatgctgctacgtttagatacttaggtcattactatgctcgtgtt
tcgcccgagccgcaacgagctctcaagtgctaccagagagctgttgctcttaatcctgat
gattctgatgccggagaagcaatttgtgatttattggatgagggaggccaagataacttg
atgattgctgtttgtcgtgaagcttctgagaagtctgccagggctttttgggcattccgt
cggctggggtaccttcaggctcatcttaaaaactgggctgaagccatacagagccttcaa
caagccatacgtggatttcctactagcgctgatttgtgggagacactaggtcttgcttat
ggacgaatgggtatgtttacagcggcacttaagtcatatggtagagctgttgagttggac
gactcgaggatatttgctctggttgaaagtggaaatatttctttgatgcttggctctttc
agaaagggaattgagcaatttcagcaagcactgataatatcgccacacaatgtgtccgca
aattatgggcttgcttctgcttttcttggtttagcgaaggaatgtgtcaattcgggtgcc
tttagatggggagcttcacttttagaggaagcagctgaagtttccatgcatgttacatct
ttagctggtaacttttcatgttcatggaagctacatggagatattcagcttatgtatgcc
agatgtaacccatggacagaggaagccaggcctgggcaagttgatgagatatctttcaaa
tcttctgtcagtacatggaaaaggacctgcttcattgcttctagaaatgccagtcgctcc
tatcagcgtgctttgcacttggccccttggctagctaatgcatatattgatgttgccatt
gcagcagatgtcagtttatcttttaaggaatctcctaaagatgattggagtgtttggcct
attgctgaaaagatgtgcttcggtggtatattactcgagggttacaatgaagaattttgg
gtagcattggcatgcttatccagtaatgctgcactaaagcaacatgctttggtgcgtgga
ttacaattggacgtgtctctagcagttgcgtgggcttaccttgggaagctctatagactg
gaaggtgaaaagaaactggcccaacaagcatttgaccgtgctagaagtatagaaccttca
cttgcattaccatgggcaggcatgtcagcagatgctgatgttagaaagtttgagcagaat
gaagcgtatgagtgctgtctacgggctgtacagatatccccggttgcagatttccagatt
ggtcttgcaaagcttgcgatgcattcaagttgcttgtcatcttcagaggtctttgcagcc
atccaacaggcgttgctgcgtattccgcactatcccgagtctcacaatttgaatggtcta
gtatgtgaatccagatctgattatcaaggtgcagtcgcctcctacaggctggccagatat
gctctaaagtattttgcagacgaaacatcagaatctcattcagacaatatatccatcaat
ttggcaagatcactttgcatggctggaaatgcaagcgaagcagttgaagagtgcgaacat
ttaaggcaaaaaggacagctcgacaccgtgggcctgcatatatatgctttatgtttacgg
agactgggcaagaatgatatggctctatctgcaacaagatcacttgcttcaagcatttta
actatggaagaaaacctagctgctgcctccattagcttcatctgtaggatgctttacagc
atatctggacaggaatctgcgatcacaagcattttgaaaatgcccaaacaactttttagc
agttcaaaaattagttttattgtttctgctattcatgttctggactcaaacaatcaactt
gaggcagttgtttcgagcagccgttcctttgttacatctcgtgaagacattatttcaatg
cacatgttaattacagttggaaaacttctgaaaagcggaaacgaaaattcccttggaatt
caaaagggagtagatcaccttagaaaagcagttcacatgttccctaacagcagtgtattg
agaaatcttcttggttatctgctgctatcaagcaaagaacggggatatctttctcttgca
acccgatgctcttcactggatttgtctgactatcaaaaggatgatggtctcaaatcagca
tatgagatcgttggtgctggaaatgttgcttgttatgccattggaagtccaaatcaaaag
tttccactaccgacctgcagacgtcaatgccattcgggatctggggccattcaagtgctg
caaaagtatttgcatcaagaaccttggaacttcaatgcaaggtatttacttacgctaaac
tgcttacagaagactcgtgcagaaaattttcctcagcatggttgccatgttgtagagcgg
ctaacagctgtggctctgtctgatcaaaatttctccatcaaagatgtatcaaggcaatat
cagaattttcagcttcttctctgtgctgccgaggtgaatctgcaacaaggcaataatact
gaatgcttcagacttgtgagaagtgctttaggcgcatcacttcatagtaaccatctcttt
ttcgcacatttgctactttgccgtgcatatgcctctgaggatgattttgtgaacctgcgg
aaagaatacaaatattgtttggagcttggaacttattctcatattggctggatttgtttg
aagtttattgaatccagatatggcctacaagatgattctaccgttttagctctgaaattt
gaagactgctccaaagatctcaagacgtcatggaatgtatggacggctctgtttagtttg
gtgcagggtttgatatctatttcgcttggtgattttgttgctgctgaagaattcttttca
caagcatgctgtgtagctgatgacgagagttctttctttctttgtcatggcgctatttgc
atggagcttgccagacagaagtgcgagtcacaatacataacacgtgccataagaagtctg
aagaaagcgaaagatacctcttccgatcctttgcctcttgtttcactgttgctgggtcaa
gcagaagcaagccttggctcaaaagagaagtggctcgtcaaccttcgcgatgaatggttt
tcttggcctccagaaaaccgatctgctgagctcctgtttcaaatgcatttgctatctaga
gagtcttctcatggtggcagtacaatgagatggattctgcgagccatccatatgaatcct
tcgtgttcgagatattggaagttcttgttaaaggagtacgaccactctctaacctag
DBGET
integrated database retrieval system
