Salvia hispanica (chia): 125211487
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Entry
125211487 CDS
T09851
Name
(RefSeq) tRNA-splicing endonuclease subunit Sen2-2-like isoform X1
KO
K15322
tRNA-splicing endonuclease subunit Sen2 [EC:
4.6.1.16
]
Organism
shis
Salvia hispanica (chia)
Brite
KEGG Orthology (KO) [BR:
shis00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03016 Transfer RNA biogenesis [BR:
shis03016
]
125211487
Enzymes [BR:
shis01000
]
4. Lyases
4.6 Phosphorus-oxygen lyases
4.6.1 Phosphorus-oxygen lyases (only sub-subclass identified to date)
4.6.1.16 tRNA-intron lyase
125211487
Transfer RNA biogenesis [BR:
shis03016
]
Eukaryotic type
tRNA spricing factors
tRNA splicing endonuclease complex
125211487
BRITE hierarchy
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Ortholog
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Gene cluster
GFIT
Motif
Pfam:
tRNA_int_endo
tRNA_int_endo_N
Motif
Other DBs
NCBI-GeneID:
125211487
NCBI-ProteinID:
XP_047967265
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All DBs
Position
3:complement(50342861..50345139)
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AA seq
329 aa
AA seq
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MAPRWKGKTAEAKALAEPMSEIISKLQTSLIESNAQGLLSGSAVLLQALPEQTELLYRAC
IGRPVITAEKDKQWHQLSFEEALYLCSVLKCINVAGENKCAKSDEELWHYMVARRVGFPV
LFKAYSHLRRKNWVVRAGSQYGVDYVAYRYHPAFVHSEYAVLALADEDGDGENARLKVWS
DFHCTLRLCGSVAKTLLVLHISRNGEDTASLSRLEHYSVEERIVTRWNPEASQALPKVQI
NDDDDDDLIDEDSLLTEEDLKKPQLLVIVKLESQRNLAKNCSCGRAGDEEKVKLGLNMDL
NVNPQSACGSCHKSVYGTIKLHWLDSGSN
NT seq
990 nt
NT seq
+upstream
nt +downstream
nt
atggccccgagatggaaagggaaaacagccgaagcaaaagccctagcagagccaatgtct
gaaataatctcgaagcttcaaacctctctgatcgaatccaatgctcaaggactgctttca
gggagtgcggtgcttctgcaagccctcccggaacaaactgaactactgtaccgtgcttgt
attggtcgtcctgttataactgcagagaaggataagcaatggcaccaactaagtttcgag
gaagctctatacttgtgctctgtcttgaaatgcatcaatgttgctggtgaaaataagtgt
gcgaagagtgatgaagagctgtggcattacatggtggccaggagagttggtttccctgtt
ctgtttaaagcgtattctcatcttcgcaggaagaactgggtggtgagggcagggtctcaa
tacggtgtcgactatgttgcctaccgttaccatccagctttcgtgcactccgaatatgca
gtccttgccttggctgatgaggatggcgatggtgaaaatgcgcggttgaaggtctggtcc
gattttcactgcacacttcgactttgtggcagtgttgcgaaaaccttgttggttcttcac
atcagcagaaacggggaagacaccgcctctctctctcgtttggagcattattctgtcgag
gagaggattgtgacaaggtggaatcctgaggcttcccaagctctaccaaaagttcagatt
aatgacgatgatgatgatgatttgatcgatgaggatagcctacttaccgaagaggatttg
aaaaaaccccaactgctggtgattgtgaagttggaatcacaaagaaatctcgcaaaaaat
tgcagttgtggaagagctggagatgaggagaaagtgaagcttggacttaatatggacctg
aatgttaatcctcagtctgcttgtggaagttgtcataaatctgtgtatggcacaataaag
ttgcattggctggattcgggatccaattga
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