Salvia hispanica (chia): 125215179
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Entry
125215179 CDS
T09851
Name
(RefSeq) pectate lyase-like
KO
K01728
pectate lyase [EC:
4.2.2.2
]
Organism
shis
Salvia hispanica (chia)
Pathway
shis00040
Pentose and glucuronate interconversions
shis01100
Metabolic pathways
Brite
KEGG Orthology (KO) [BR:
shis00001
]
09100 Metabolism
09101 Carbohydrate metabolism
00040 Pentose and glucuronate interconversions
125215179
Enzymes [BR:
shis01000
]
4. Lyases
4.2 Carbon-oxygen lyases
4.2.2 Acting on polysaccharides
4.2.2.2 pectate lyase
125215179
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Gene cluster
GFIT
Motif
Pfam:
Pectate_lyase_4
Beta_helix
HR1
Motif
Other DBs
NCBI-GeneID:
125215179
NCBI-ProteinID:
XP_047972475
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Position
3:6889937..6891702
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AA seq
402 aa
AA seq
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MSAFLFLLLLISASSILVSSSSLQDPAIVVQDVQEKINSSRRNLGYLSCSTGNPIDDCWR
CNSNWESHRQQLADCAIGFGKNAAGGRGGRIYVVTDPGNDDPVNPRPGTLRHAAIQSEPL
WIIFKSDMVIRLRQELVMNSHKTIDGRGASVHVADGPCIAIHHATNIIIHGIHIHDCKKA
GNANIRDSPTHSGWWEESDGDGISIFGGRDVWIDHCSLSNCNDGLIDAIHGSTAITISNS
YFTHHDKVMLLGHNDAFVQDKSMQVTIAFNHFGEGLVQRMPRCRHGYFHVVNNDYTHWEM
YAIGGSASPTIYSQGNRFLAPNNRVRKEVTKHEDAPESEWRGWNWRSEGDLMLNGAYFRQ
SGHAGASSAYARASSLSARPSSLVGSITGASGPLSCKKGSHC
NT seq
1209 nt
NT seq
+upstream
nt +downstream
nt
atgtctgcatttctattcttattgctactaatttcggcaagctcaatccttgtttcatca
tcctcacttcaagatccagctattgtggtccaagatgtacaagagaaaatcaattcatcc
cgaagaaacctaggttacctgtcctgctcgacaggtaaccccatcgacgactgctggcgg
tgcaactctaactgggagagccaccgccagcagttagccgactgcgcgatcggattcggc
aagaacgcggccggagggcggggcggccgcatctacgtggtcaccgaccccgggaacgac
gacccggtcaaccctcggccagggaccctccggcacgcggcgatccagagcgagccgctg
tggataatcttcaagagcgacatggtgatccggctgaggcaggagctggtgatgaactcg
cacaagacgatcgacgggcgcggggcctccgtgcacgtggcggacgggccgtgcatcgcc
atccaccacgccaccaacatcatcatccacgggatacacatccacgactgcaagaaggcc
ggcaacgccaacattagggactcccccacccactccgggtggtgggaggagtccgacggc
gacgggatatcgatcttcggaggccgggatgtgtggattgatcactgctccttgtccaac
tgcaacgacgggttgattgatgcgattcatggctccactgcgattacgatttcgaatagc
tacttcacgcatcatgataaggtgatgttgttggggcataatgatgcgtttgtgcaagat
aagagcatgcaggtcaccattgcttttaatcattttggagaaggattagttcaaagaatg
cctaggtgcaggcatggatattttcatgtagtaaacaatgactatacacattgggaaatg
tatgcgattggtgggagtgcttctccaacaatttatagtcaagggaataggtttcttgcg
ccaaacaatagggttaggaaagaggtgacaaagcatgaggatgcacccgaaagcgagtgg
agagggtggaattggaggtcggaaggtgacttgatgctcaacggggcttatttccggcag
tcggggcatgctggagcttcatcagcgtatgctagggcgtcgagtttgagtgcaaggcca
tcgtctcttgtgggttcaataactggtgcctcaggcccacttagttgcaagaagggaagt
cattgctag
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