Salvia hispanica (chia): 125218444
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Entry
125218444 CDS
T09851
Name
(RefSeq) probable pectate lyase 18
KO
K01728
pectate lyase [EC:
4.2.2.2
]
Organism
shis
Salvia hispanica (chia)
Pathway
shis00040
Pentose and glucuronate interconversions
shis01100
Metabolic pathways
Brite
KEGG Orthology (KO) [BR:
shis00001
]
09100 Metabolism
09101 Carbohydrate metabolism
00040 Pentose and glucuronate interconversions
125218444
Enzymes [BR:
shis01000
]
4. Lyases
4.2 Carbon-oxygen lyases
4.2.2 Acting on polysaccharides
4.2.2.2 pectate lyase
125218444
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Motif
Pfam:
Pectate_lyase_4
Beta_helix
Motif
Other DBs
NCBI-GeneID:
125218444
NCBI-ProteinID:
XP_047976069
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Position
4:18480396..18482407
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AA seq
407 aa
AA seq
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MALSSLIQSPLILISFLLFTSLIAAMPTLQDPELVVQEVHRKLNASRRKLGFLSCNTGNP
IDDCWRCDSNWEQNRQKLADCAIGFGKNAIGGRDGKIYIVTDSKDDDPVNPKPGTLRHAV
IQDEPLWIIFERDMVIQLKEELIMNSFKTIDGRGASVHIANGPCITIQYVTNIIIHGVHI
HDCKQGGNTKVRDSPEHFGWRTLSDGDGVSIFGGSHVWVDHCSLSNCNDGLIDAIHGSTG
ITISNNYMTHHNKVMLLGHSDTYLQDKGMQVTIAFNHFGEGLVQRMPRCRHGYFHVVNND
YTHWEMYAIGGSADPTINSQGNRFLAPNDRFNKQVTKHEDAPESQWKNWNWRSEGDLMLN
GAFFVASGVGASSSYAKASSLGARPSSLVGPITSGSGALVCRKGSRC
NT seq
1224 nt
NT seq
+upstream
nt +downstream
nt
atggcactctcttcactaatccaatcaccacttatcctaatatcatttttattattcaca
tcactcattgccgccatgccaaccctacaagaccctgagcttgtagtccaagaagtacat
aggaaattaaatgcttctagaagaaagttgggattcttatcatgcaacacgggtaaccca
atcgatgattgctggcggtgcgactccaactgggagcagaatcgccagaagctagccgac
tgtgccataggttttggtaagaacgccatcggaggcagggatggcaagatatacattgtg
acggactcaaaagacgatgatcccgtgaaccctaagccagggacgctccgccatgctgtg
atccaagacgagccattgtggatcatattcgagcgtgacatggtcattcaattgaaggag
gaattgatcatgaactcatttaagaccattgatggaaggggcgctagtgtgcacattgca
aacggtccatgcatcaccatacaatatgtgaccaacatcatcatccatggtgttcacata
catgattgtaagcaaggcgggaacactaaggtgcgggactccccagagcacttcgggtgg
aggaccttatccgacggtgatggggtgtcgatctttggcgggagccacgtgtgggttgat
cattgttccttgtctaactgcaatgatgggctcattgacgcaatccatgggtccacgggt
attacaatctctaataattatatgactcatcataataaggtcatgcttttagggcatagt
gatacatatctccaagataagggcatgcaagtcaccattgcattcaatcactttggagag
gggcttgtacaaagaatgccaagatgtagacatggctacttccatgtggtgaacaatgac
tacactcattgggagatgtatgctattggagggagtgctgaccccacaattaatagccaa
ggcaatagatttcttgcccctaacgacagatttaacaaacaggttacaaaacacgaggat
gcacccgaaagccagtggaagaactggaattggagatcggagggagacctaatgctaaat
ggtgcattttttgtagcttcgggtgtgggggcctcgtcgagttatgctaaggcgtcaagc
ttaggtgctcggccatcaagcctagtgggacccatcacctctggttccggtgctctcgtg
tgccggaagggctctcgctgctaa
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