Salvia hispanica (chia): 125220444
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Entry
125220444 CDS
T09851
Name
(RefSeq) LOW QUALITY PROTEIN: SNF2 domain-containing protein CLASSY 3-like
KO
K10875
DNA repair and recombination protein RAD54 and RAD54-like protein [EC:5.6.2.-]
Organism
shis
Salvia hispanica (chia)
Pathway
shis03440
Homologous recombination
Brite
KEGG Orthology (KO) [BR:
shis00001
]
09120 Genetic Information Processing
09124 Replication and repair
03440 Homologous recombination
125220444
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
shis03400
]
125220444
DNA repair and recombination proteins [BR:
shis03400
]
Eukaryotic type
DSBR (double strand breaks repair)
HR (homologous recombination)
Rad54 family proteins
125220444
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
SNF2-rel_dom
Helicase_C
ResIII
Helicase_C_2
BOFC_N
Motif
Other DBs
NCBI-GeneID:
125220444
NCBI-ProteinID:
XP_047978570
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All DBs
Position
4:complement(15229347..15233062)
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AA seq
1068 aa
AA seq
DB search
MEVTRRKRTRGQWDCYWEQVYADLKQKQKKNDAAAAFQTLNSDDMEQNHGVETLIPDDMK
QNHGVETLISDDMEQNRGVETLNADSEEVLIASDLEQNDGVEAFDKNDGMNVDDDDDVNN
SGEHDVEDSDEPASKSEEEDDDCKGGESLVSESLDDEYSVAENTRRNKHRRKESPTKQVN
VIVIDDDDDDDNDVSNSGEDGVEDSDVSVEDSDEAASEDDDYKGGESSVSESSDDQYAVA
ESTRKREHLRKESPAKQVNVLVTDDDDDVSNSGEDGVEDSDVSVEVSDGPACECEEDNDY
KGGESSVSESSDDEYAVAENTLKREHLTKESPTKLMIKVIKPVKQGLMSTTQFLKYYVPE
SALPSRFRFEDEVVLPPHKSEHEKFIDELFHDLELGLRQIDCTNPVAESDELETSVEIDG
SCCCRGKHQAILDEQIGLICKNCDVVIMDIKHVLPPFHVPTWEGRDKRYYRDEFQSSYLS
EIQFEGTDSSIXPGSTSCMKGTVWDLIPGVKEELYPHQREGFEFMWRNIAGDTKLEKLKQ
TLADDARGCIISHAPGTGKTRLTIVFLQSFLKLYPACSPLIIVPKGMLLTWEAEFKKWNF
NIDFHNLNKKKLSGKEHTVATEVLEEIGSGVLNQDCIRLLKLYSWERGGSVLGVSYKLFE
KLAGGRNGKSLQHKKIREVLLQRPTLLVLDEGHTPRNNNSLIWKALAKVSTQRRIILSGT
PFQNSLRELFNTLCVVNPKFADQDNSVRGPRWKNLDNSSGINRGTMLGMRTVLEPYIHVH
KGTVLEEKLPGLRHTLVFLHPTKSQQPLLERACKEKXMFKMIRMVSLVSVHPSIRAVVKE
YFTRREEIATDIDAGVKAWFLLNLVRFADALGERVLIFGQFLDSLIFIKEQLGSIYSWNE
GREVVYIDGQVDEKKRQESIYRFNDETSEAKVLLASERACSEGINLTGASRVVLLDTMWN
PSVEKQAICRAYRLGQKRVVYVYRLFTSGIEVGQYKQQHLKERISQGLFSLGEEHSEYAG
AVAEDKVMDAMRSLENFDQIFEKIISQPKESDLIKTFGMEGLICCCWL
NT seq
3207 nt
NT seq
+upstream
nt +downstream
nt
atggaggtcaccagaagaaaaagaactagaggccagtgggattgttactgggaacaggtg
tacgccgacctgaaacaaaagcagaagaagaatgatgctgctgctgcttttcaaaccttg
aattccgatgatatggagcagaatcatggtgttgaaacgttgattcccgacgatatgaag
cagaatcatggtgttgagacgttgattagcgatgatatggagcagaatcgtggtgttgaa
acgttgaatgccgattctgaagaggttttgattgcatcggatttggagcagaatgatggt
gttgaagcgtttgacaagaatgatggtatgaatgtggatgatgacgatgatgttaacaac
agtggcgaacatgatgtggaagattcagatgagcctgcctctaaatctgaggaggaagat
gatgattgtaaaggaggcgagtctttggtttctgaatcattagatgatgagtatagtgtt
gctgaaaacactaggaggaataagcatcgcagaaaagagagtcctacaaagcaagtaaat
gttatcgttattgatgacgacgatgacgatgacaatgatgttagcaacagtggcgaagat
ggtgtggaagattcagatgtttctgtggaggattcagatgaggctgcctctgaagatgat
gactataaaggaggcgagtcttcggtttctgaatcatcagatgatcaatatgctgttgct
gaaagcactaggaagagagagcatctcagaaaagagagtcctgcaaagcaagtaaatgtt
cttgttactgacgatgacgatgatgttagcaacagtggcgaagatggtgtggaagattca
gatgtttctgtggaggtatcagatgggcctgcctgtgaatgtgaggaagataatgactat
aaaggaggcgagtcttcggtttctgaatcatcagatgatgagtatgctgttgctgaaaac
actttgaagagagagcatctcacaaaagagagtcctacaaagctgatgatcaaagtgatc
aaaccagtgaaacaaggtctcatgagcacaacacaatttctgaagtattatgtgcctgag
agtgcccttccttcgaggttcagatttgaggacgaggtggtgctccctccacacaaatca
gagcatgaaaagttcatagatgaactctttcatgatctagagttaggattacgacaaatc
gattgcactaatcccgtggctgagagtgatgagcttgagaccagtgtggagattgatgga
agttgttgctgccgagggaagcatcaagctattcttgatgaacagatagggctcatttgc
aaaaactgtgatgttgtgattatggacataaagcatgtcttaccaccttttcatgtacca
acttgggaggggcgagacaagaggtattaccgtgatgagttccaaagctcctacttaagc
gagattcaatttgagggcactgattccagtatannccctggttcgacaagttgtatgaaa
ggaacagtatgggatttaatccctggtgttaaggaagaactgtaccctcatcagcgggag
ggcttcgagttcatgtggagaaacatagcaggagacactaaacttgagaaactgaagcag
actcttgctgatgatgcaagagggtgcataatctcacatgccccaggcactggaaagact
cgtctcaccatagtgttcctgcagtcattcctgaagctgtatccagcctgcagccccttg
atcatagttcctaaagggatgcttctgacatgggaagctgagttcaagaaatggaacttc
aacatagattttcataatttaaataagaaaaagctatccggaaaagaacatacagttgct
actgaggttcttgaggaaattgggagtggagtcttaaatcaagactgcattcgcctgctt
aaattgtattcctgggagagaggtggtagcgtcttaggggtcagctacaaactgtttgag
aagcttgctggaggaagaaatgggaaaagtttgcagcataagaaaatcagggaggtgctt
cttcaaaggccgacccttttagtgcttgatgaagggcatacacctcgtaataacaatagc
ctgatatggaaggccttggcgaaagtctcaacacagcgacgtatcatcttgtcaggcact
ccattccaaaacagtctcagggagctattcaacactctgtgcgtcgtaaatccaaagttt
gcagatcaggacaacagtgtacgtggaccaagatggaagaatttggacaactcatctggc
ataaataggggcacgatgttggggatgaggactgtgctcgaaccatacattcatgtgcac
aagggaactgtgctagaggaaaagcttcccggactgaggcacacgctagtattcttgcat
ccaacaaagtctcaacagccactgctagaaagagcttgcaaagagaaanngatgtttaag
atgattcggatggtatccctagtctctgttcatccttcaatacgtgcagtagtgaaggag
tacttcactagaagagaggagattgcaacggatattgatgctggggtgaaggcatggttt
cttctgaacctagtacgctttgctgatgcactcggtgagagggtgctcatcttcggccag
ttcttagactctcttatattcatcaaagagcagcttgggtccatttattcatggaatgaa
ggaagagaagtggtttacattgatggacaggttgatgagaagaaacgccaagaatccata
tatcgcttcaatgatgaaacaagcgaagcaaaggtgcttcttgcatctgagagagcttgc
tcggagggtataaatctgacaggggcttcaagagttgtgctgctggataccatgtggaat
ccttcagtggaaaagcaagcaatctgcagggcttaccgtcttggacagaagagagtggtg
tatgtatatcgcctatttacatctggaatcgaggtcggacaatataagcagcagcatctg
aaggagcgcatatcacagggattattctctcttggtgaagagcatagtgaatatgcagga
gcagttgcagaggacaaggttatggatgccatgcgcagccttgaaaatttcgatcagata
tttgagaagattatttcccaaccaaaggaatccgacctcatcaaaacatttggaatggaa
gggcttatatgttgttgctggttgtga
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