Salvia hispanica (chia): 125221555
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Entry
125221555 CDS
T09851
Name
(RefSeq) terminal nucleotidyltransferase 4B-like isoform X1
KO
K03514
non-canonical poly(A) RNA polymerase PAPD5/7 [EC:
2.7.7.19
]
Organism
shis
Salvia hispanica (chia)
Pathway
shis03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
shis00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
125221555
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
shis03019
]
125221555
03016 Transfer RNA biogenesis [BR:
shis03016
]
125221555
Enzymes [BR:
shis01000
]
2. Transferases
2.7 Transferring phosphorus-containing groups
2.7.7 Nucleotidyltransferases
2.7.7.19 polynucleotide adenylyltransferase
125221555
Messenger RNA biogenesis [BR:
shis03019
]
Eukaryotic type
mRNA degradation factors
3'-5' decay
TRAMP complex
125221555
Transfer RNA biogenesis [BR:
shis03016
]
Eukaryotic type
tRNA degradation factors
TRAMP complex
125221555
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
MTPAP-like_central
PAP_assoc
NTP_transf_2
PAP_NTPase
Polbeta
Nrap_D2
Motif
Other DBs
NCBI-GeneID:
125221555
NCBI-ProteinID:
XP_047979643
LinkDB
All DBs
Position
1:complement(19116064..19121085)
Genome browser
AA seq
498 aa
AA seq
DB search
MENNEISYETLTPLAADESPAPPPPPSSSPEIEPYVVLRNHISLSTVQFPSPESIAPDYF
SLDVNEAADKLTSVSATPPPSRDAGATPAPAPDRTLEGSWFRANSRFKSPMLRLHKEILD
FCEFLSPTAEEQESRNAAIKSVFDVINYIWPNAVAEVFGSFETGLYLPSSDIDVVILGSN
VRTPLIGLQALSRALSQRGIAKKMQVIAKARIPIIKFVEKKSGFSFDISFDVHNGPKAAE
FIKDAVSAWPPLKPLCLILKVFLQQRELNEVYTGGIGSYALLSMLIAMLRTHRDSQTSPE
CNLGVLLVNFFDLYGCKLNTADVGISCNGECIFFEKYSNGFSVEGRPSLIAIEDPQAPDN
DIGKSSFNYYQARSAFAMAFTTLTNAKTIQHLGPNRSILSAIIRPDAVLLERKGGSNGKL
TFDNIFPGNGEPLERLNGDDHQEIYCNWALNDEEEESLPRGGRTPRERKRTASRDGRSSK
KAKVHATPTVDSHKNGSV
NT seq
1497 nt
NT seq
+upstream
nt +downstream
nt
atggaaaataacgaaattagttatgaaaccctaacccccctcgccgccgacgaatcgccg
gcccctccgcctccgccgtcttcctcccccgaaattgagccttacgtcgtcttgcgcaac
cacatttccctatccaccgtccaatttccatcaccggaatccattgctcctgactacttc
tccctcgacgtgaacgaggcagcagataaattgacatcggtttcagccactcctccaccg
tcgcgcgatgccggggccacccccgctccagctccagatagaactctggaaggcagctgg
tttcgcgccaattctcgcttcaaaagccccatgcttcgtctgcataaagagatacttgat
ttttgtgagtttttgtcgccaactgccgaggagcaagaatctagaaatgctgctataaaa
tctgtgtttgatgtgatcaactacatctggcctaatgctgtggccgaagtttttggatcg
tttgagacggggctttatcttccatccagtgatattgatgttgtgatattaggttcaaat
gtaagaactcctctgataggtcttcaggctctatccagggcactctctcaaaggggaatt
gctaaaaagatgcaggttattgcaaaagcacggataccaattatcaaatttgtggagaaa
aaaagtggtttttcttttgatataagttttgatgttcataatggaccaaaagctgcagag
tttataaaggatgctgtgtccgcatggccccctctaaaaccactgtgtctgattttgaaa
gtcttccttcagcaaagagagttaaatgaggtgtacacaggtggaattggatcctatgca
cttctgtctatgcttatagcaatgttacggactcatcgagatagccaaacttctccagaa
tgtaacctaggagtcttactggttaacttttttgacttgtatgggtgtaagttaaacaca
gccgacgttggcatatcttgcaatggtgaatgcattttcttcgaaaaatatagcaacgga
ttttcagttgaaggcaggccatctctaattgccattgaagatcctcaggctccagataac
gatatagggaagagctcgttcaactattatcaggctagatctgcttttgctatggctttc
actacattgactaatgcaaagaccatacagcatcttggtccaaacaggagtattcttagt
gctataatcaggccagatgctgttctactggaacgaaagggagggtctaatgggaaattg
acatttgataacatattccctggtaatggagagcctctggagcggctgaacggtgatgat
catcaggaaatttattgtaactgggccttaaacgacgaagaggaagaatcacttcctcgc
ggaggtagaactcccagggaaagaaaaagaacggcttctagagacggaagatcgtctaaa
aaggcaaaagttcacgccaccccaactgtagacagccacaaaaatggctcagtgtag
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