Shewanella sp. MR-7: Shewmr7_0187
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Entry
Shewmr7_0187 CDS
T00389
Name
(GenBank) DNA-directed RNA polymerase, beta subunit
KO
K03043
DNA-directed RNA polymerase subunit beta [EC:
2.7.7.6
]
Organism
shm
Shewanella sp. MR-7
Pathway
shm03020
RNA polymerase
Brite
KEGG Orthology (KO) [BR:
shm00001
]
09120 Genetic Information Processing
09121 Transcription
03020 RNA polymerase
Shewmr7_0187
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
shm03021
]
Shewmr7_0187
03400 DNA repair and recombination proteins [BR:
shm03400
]
Shewmr7_0187
Enzymes [BR:
shm01000
]
2. Transferases
2.7 Transferring phosphorus-containing groups
2.7.7 Nucleotidyltransferases
2.7.7.6 DNA-directed RNA polymerase
Shewmr7_0187
Transcription machinery [BR:
shm03021
]
Prokaryotic type
Bacterial type
RNA polymerase
Core subunits
Shewmr7_0187
DNA repair and recombination proteins [BR:
shm03400
]
Prokaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TCR (transcription coupled repair) factors
DNA-directed RNA polymerase complex (RNAP)
Shewmr7_0187
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNA_pol_Rpb2_6
RNA_pol_Rpb2_1
RNA_pol_Rpb2_45
RNA_pol_Rpb2_3
RNA_pol_Rpb2_7
RNA_pol_Rpb2_2
Motif
Other DBs
NCBI-ProteinID:
ABI41193
UniProt:
Q0I0B2
LinkDB
All DBs
Position
211829..215866
Genome browser
AA seq
1345 aa
AA seq
DB search
MVYSYSEKKRIRKDFGKRPQVLDIPYLLSIQLDSFKKFTDQDPTGERGLEAAFRSVFPIK
SFSGNSELQYVSYKLGEPVFDVKECQIRGVTYSAPLRVKLRMVLYDREAAAGTVKDIKEQ
EVYMGDIPLMTDNGTFVINGTERVIVSQLHRSPGVFFDHDRGKTHSSGKVLYNARIIPYR
GSWLDFEFDPKDALFVRIDRRRKLPATIILRALEYSTQEILDLFFERVEFKIKKDTLVMT
LVPERLRGETASYDIKDAEGSVLVEAGRRITARHIRQLEKTNTTELEVPVEYIVGKYAAQ
DYIDPDTGEVLVSANSEISLEDLAKLSLAGIKELSTLYINELDHGAYISDTLRIDPTTNR
LEALVEIYRMMRPGEPPTKDAAEALFQNLFFSEERYDLSKVGRMKFNRRLSIPDDEGSGV
LSKEDIVAVMKNIIHIRNGFDEVDDIDHLGNRRIRSVGEMAENQFRVGLVRVERAVRERL
SLGDLNELMPQDLINAKPISAAVKEFFGSSQLSQFMDQNNPLSEVTHKRRISALGPGGLT
RERAGFEVRDVHPTHYGRLCPIETPEGPNIGLINSLASFARTNSYGFLETPYRKVVDGVI
TDDVEYLSAIEEGRYVIAQANIEVDSQGRMVEEQIACRHKGESTFMRASDIQYMDVSPQQ
IISVAASLIPFLEHDDANRALMGANMQRQAVPTLKSEKPLVGTGIERTLAVDSGVVVAAK
RGGVIDYVDASRIVVKVNEDELRPGEAGIDIYNLTKYTRSNQNTCINQRPCCSVGEPVVR
GDVLADGPSTDLGDLALGQNMRIAFMPWNGYNFEDSILISERVAQEDRFTTIHIQELSCI
ARDTKLGSEEITADIPNVGESALSKLDESGIVYIGAEVKGGDILVGKVTPKGETQLTPEE
KLLRAIFGEKASDVKDSSLRVPNSVKGTIIDVQVFTRDGVEKDKRAIEIEEMHIAQARKD
LGEEFKILEEGVLSRARNLLLSAGFTEAQIAALPRKDVLVQVIDDETKQTELEQLAEQHE
ELKADFDKKFEIKRRKITQGDDLAPGVLKIVKVYLAVKRTIQPGDKMAGRHGNKGVISKI
NPIEDMPYDEQGNPVDIVLNPLGVPSRMNIGQVLEVHLGAAAKGIGNKIAAMLEDQREKG
LAEVRSYIKQVYELGDEVQQRVDIDSFTDDELLRLANNLKGGIPVATPAFDGAKEKEIKQ
MLELAGLPTSGQLKLFDGRTGNEFERPVTVGYMYMLKLNHLVDDKMHARSTGSYSLVTQQ
PLGGKAQFGGQRFGEMEVWALEAYGAAYTLQEMLTVKSDDVNGRTQMYKNIVDGNHQMQP
GMPESFNVLLKEIRSLGINIELDQE
NT seq
4038 nt
NT seq
+upstream
nt +downstream
nt
atggtttactcctattctgaaaagaagcgtattcgcaaagactttggtaagcgtccacag
gtgttggatattccttaccttttgtctattcagttagactcttttaagaagttcaccgat
caagatcctaccggtgagcgcggtctagaagccgccttccgtagcgtttttcccatcaag
agcttttctggtaattcagaactgcaatacgtcagctataagcttggcgagcctgttttt
gatgtgaaagagtgtcagatccgtggtgttacatattcagcgccactacgcgttaaatta
cgcatggtgttgtatgatcgtgaagcagcggccggcactgtaaaagatattaaagaacaa
gaagtctacatgggtgatatcccattaatgactgacaacggtacctttgtgatcaacggt
actgagcgtgtaatcgtatctcaattacaccgcagcccaggcgtgttctttgatcatgac
cgtggtaaaacccactcatcaggtaaggtgctgtataacgcacgtatcattccttaccgt
ggttcatggttagactttgaattcgaccctaaagatgcactgttcgtacgtattgaccgt
cgccgtaaattacctgcgaccatcattctgcgcgcattagagtattctactcaagagatc
ctcgatctgttcttcgaacgcgttgagttcaagatcaagaaagatactctggttatgacc
ttagtacctgagcgtctgcgtggcgaaaccgccagctacgacatcaaggatgctgaaggc
tctgtattggttgaagctggccgtcgtatcactgcacgccacattcgccaattagaaaaa
accaataccactgaactcgaagtgccagttgagtacatcgtgggcaaatatgctgcccaa
gattacatcgatccggacacgggtgaagtcttagtttctgctaacagtgaaatcagctta
gaagacttagcgaagttatcactggcaggcatcaaagagctaagcacgttatacatcaac
gagctagaccacggtgcttacatctctgacactctgcgtatcgatccaaccactaaccgc
ttagaagcgttagttgagatctaccgcatgatgcgtcctggtgagccaccaaccaaagat
gcagcagaagcgctgttccaaaacttattcttcagcgaagaacgttatgacctgtctaaa
gtaggtcgtatgaagttcaaccgtcgtctcagcattcctgatgacgaaggtagcggcgta
ctgtctaaagaagacatcgttgcagtaatgaagaacatcattcacatccgtaacggcttc
gacgaagtggacgatatcgaccacttaggtaaccgtcgtattcgttctgtgggtgaaatg
gctgaaaaccaattccgtgttggtctggtccgtgttgagcgcgccgtgcgtgaacgtctg
tcattaggcgatctgaacgagctgatgccacaagacttaatcaacgctaagccaatttct
gctgcagtgaaagagttcttcggttcttctcagctgtcacaattcatggaccaaaacaac
ccgctgtcagaagtaacgcataagcgtcgtatttctgctcttggcccaggtggtttgacc
cgtgagcgtgcaggcttcgaagtccgcgacgtacacccaacgcactatggtcgtttatgt
ccaattgagacccctgaaggtccaaacattggtctaatcaactcattagcgagctttgcc
cgtactaactcttacggcttcttagaaaccccataccgcaaagtggtagacggtgtgatc
actgacgatgtggaatacttgtcagcgattgaagaaggtcgttatgtgattgcacaggcg
aacatcgaagttgactcacaaggtcgcatggttgaagaacagatcgcatgtcgtcacaaa
ggtgaatctacctttatgcgtgcgtctgacattcaatacatggacgtatcgccacaacag
atcatctctgttgctgcgtctctgatcccgttcttagaacacgacgacgcgaaccgtgca
ttgatgggtgcgaacatgcaacgtcaagcggtaccaacactgaaatcagagaagcctctg
gtcggtactggtattgagcgcacgttagctgtggactcaggcgtagttgttgctgccaaa
cgtggcggtgtgatcgattacgttgatgcgagccgtatcgtagttaaagtaaatgaagac
gagctgcgcccaggcgaagcaggtatcgacatttacaacctgactaagtacacccgttct
aaccaaaacacttgtatcaaccaacgtccatgttgttcagttggtgagccagtggttcgt
ggtgacgtgttagcagacggtccgtctactgacttaggtgacttagcccttggccagaac
atgcgtatcgcgttcatgccttggaacggttacaacttcgaagactcgatcttaatttct
gagcgtgttgcacaggaagaccgtttcaccactatccacattcaagagctgtcttgtatc
gctcgtgataccaagctgggtagcgaagaaatcactgctgacattccaaacgtaggtgaa
tctgctctgtcgaaactcgacgagtcaggtatcgtttacatcggtgcagaagtgaagggt
ggtgacattctggtaggtaaagttacgccaaaaggcgagacgcaactgactccagaagag
aagttactacgcgctatcttcggtgagaaagcgtctgatgtgaaagacagctcactgcgt
gtacctaactctgttaaaggtaccatcatcgacgttcaggtatttacccgtgacggcgtt
gagaaagacaaacgtgccattgaaatcgaagaaatgcacattgcccaagctcgtaaagac
ttaggcgaagagttcaagatccttgaagaaggcgtattgagccgtgcgcgcaacttatta
ttaagtgccggtttcactgaagcacaaatcgcagcattgccacgtaaagatgtattggtt
caagttattgacgatgaaaccaaacaaactgagcttgagcaattagctgaacagcatgaa
gagctgaaagcagacttcgataagaagtttgaaatcaaacgtcgcaagatcacccaaggt
gatgacttggcaccaggcgtactgaagatcgttaaggtttacttagcggttaaacgtact
atccaaccaggtgacaagatggcgggtcgtcacggtaacaagggtgttatctctaagatt
aacccaattgaagacatgccgtacgacgagcaaggcaaccctgtggacatcgtattgaac
ccgctaggcgttccatcacgtatgaacatcggtcaggttcttgaagttcacttaggtgct
gctgctaaaggtattggtaacaagattgctgccatgctggaagatcagcgcgagaaggga
cttgcagaagttcgtagttacatcaagcaagtgtacgaattaggtgacgaagtgcagcag
cgcgttgacatcgattcattcactgacgatgagttactgcgcttagcgaacaacctgaaa
ggcggtatcccagttgctacgccagccttcgacggtgctaaagagaaagagatcaagcag
atgcttgagcttgcaggcttgccaacctctggtcagctgaaattatttgatggtcgtacc
ggtaacgaatttgagcgtccagtaactgtaggttacatgtacatgctcaaactgaaccac
ttagttgacgataagatgcacgcccgttctaccggttcgtacagcttagtgactcaacaa
ccactgggcggtaaagctcagttcggtggtcagcgtttcggggagatggaagtgtgggca
ctagaagcatacggtgccgcttatacgcttcaagaaatgctcaccgtgaaatcggatgac
gttaacggtcgtactcagatgtataagaacatcgtcgacggtaaccatcagatgcagcct
ggcatgccagagtccttcaacgtattactgaaggagatccgttcactcggtatcaacatc
gagttggatcaggaataa
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