Sturnira hondurensis: 119002083
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Entry
119002083 CDS
T07222
Symbol
PARN
Name
(RefSeq) poly(A)-specific ribonuclease PARN isoform X1
KO
K01148
poly(A)-specific ribonuclease [EC:
3.1.13.4
]
Organism
shon
Sturnira hondurensis
Pathway
shon03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
shon00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
119002083 (PARN)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
shon03019
]
119002083 (PARN)
Enzymes [BR:
shon01000
]
3. Hydrolases
3.1 Acting on ester bonds
3.1.13 Exoribonucleases producing 5'-phosphomonoesters
3.1.13.4 poly(A)-specific ribonuclease
119002083 (PARN)
Messenger RNA biogenesis [BR:
shon03019
]
Eukaryotic type
mRNA degradation factors
3'-5' decay
Other 3'-5' decay factors
119002083 (PARN)
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
CAF1
RNA_bind
R3H
RRM_Thc1
NCBP3
T6PP_C
RRM_1
Motif
Other DBs
NCBI-GeneID:
119002083
NCBI-ProteinID:
XP_036923673
LinkDB
All DBs
Position
Unknown
AA seq
638 aa
AA seq
DB search
MEIIRSNFKSNLHKVYQAIEEADFLAIDGEFSGISDGPSVTALTNGFDTPEERYQKLKKH
SMDFLLFQFGLCTFKYDYINSKYIIKSFNFYVFPKPFSRSSPDVKFVCQSSSIDFLASQG
FDFNKVFRNGIPYLNQEEERQLREQYDEKRLQSNGAGALSYVSPNTSKCPVTIPEDQKKF
IDQVVEKIEDLLQNEENKNLDLEPCTGFQRKLIYQTLSWKYPKGIHVETLETEKKERYIV
ISKVDEEERKRREQQKHAKEQEELNDAVGFSRVIHAIANSGKLVIGHNMLLDVMHTVHQF
CCPLPEDLNEFKEMTTCVFPRLLDTKLMASTQPFKDIINNTSLAELEKRLKETPFNPPKV
ESAEGFPSYDTASEQLHEAGYDAYITGLCFISMTNYLGSFLSPPKIHVSARSKLIEPFIN
KLFLMRVMDIPYLNLEGPDLQPKRDHVLHVTFPKEWKTSDLYQLFSAFGNIQISWIDDTS
AFVSLSQPEQVQIAVNTSKYAESYRIQTYAEYVGKKHEEKQIKRKWPEDSWKEVERKRLN
NQCISCALQNHYYRTNSLTGTSSGRKRSLSPSQADTGSEARVSEEISDLELEQTDSCAES
PPERRKKTKKFKRMKKDRSPAGSVSDGSAKLFEVPDTW
NT seq
1917 nt
NT seq
+upstream
nt +downstream
nt
atggagataatcaggagcaattttaagagtaatcttcataaagtgtaccaggccatagag
gaagcggacttccttgccatcgatggggagttttcaggaatcagtgatggaccttcagtc
accgcattaacaaatggttttgacactccagaagaaaggtatcagaagcttaaaaagcat
tccatggactttttgctgtttcagtttggcctttgcacttttaagtatgactacataaat
tcaaagtatataataaagtcatttaacttctatgttttcccgaaacccttcagtagatcc
tccccagatgtcaaatttgtttgtcagagctcaagcattgactttctagcaagccaagga
ttcgattttaataaggtttttcgcaatggaattccatatttaaatcaggaggaagaaaga
cagttaagagagcagtatgatgaaaagcgtttacagtccaatggtgcaggagctctgtcg
tatgtgtctcctaacacgtcaaaatgtcctgtgacaattcctgaggatcagaaaaaattt
attgaccaagtggtagagaagatagaagatttattacaaaatgaagaaaataagaacttg
gatttagagccatgtacagggttccaaagaaaactaatttatcagactttgagctggaag
tatcccaaaggtattcacgttgagactttagaaactgaaaagaaggagcgatacatagtt
atcagtaaagtagatgaagaagaacgtaaaagaagagagcagcagaaacatgctaaagaa
caggaagaactgaatgatgctgtggggttttctagagtcattcatgccattgctaattcg
ggaaagcttgttattggacacaatatgctcctggatgttatgcacacagttcatcagttc
tgctgccctctccctgaggacttaaatgaatttaaggagatgacaacatgtgtttttccc
agactcttggatactaaattgatggccagcacacaaccttttaaggatatcattaacaac
acatcccttgcagaactggaaaagcgattaaaagagacacctttcaaccctcctaaagtt
gaaagtgcagaaggttttccaagttatgacacggcttctgaacagctccatgaggcaggc
tatgatgcttatatcacaggattgtgtttcatctccatgacaaactacctaggttcattt
cttagtcctccaaaaattcatgtgtctgccagatcaaaacttattgaaccttttattaac
aagttatttcttatgagagtcatggatattccctatctaaacttggaaggaccagacttg
cagcctaaacgcgatcacgttcttcatgtgacattccccaaagagtggaaaaccagtgac
ctttaccagcttttcagtgcctttggtaacattcagatatcttggattgatgatacatca
gcatttgtttctcttagccagcctgagcaagtccaaattgctgtcaataccagcaaatat
gcagaaagctatcggattcagacgtatgctgaatatgtggggaaaaaacatgaggagaag
caaatcaagagaaagtggccagaagatagttggaaggaggttgagagaaagcggttaaac
aatcagtgcatatcctgtgctctgcagaatcactattaccgcaccaatagtcttacaggc
accagctcagggagaaagagaagtctgagtcccagtcaagcagacactggctcagaggcc
agagtatcggaagaaatatctgaccttgaacttgagcagacagattcctgtgcagaatct
cccccggaaagaaggaaaaagactaagaaatttaaaagaatgaagaaggaccgttctcca
gcaggaagcgtctcagacggctctgccaagctcttcgaagttcctgacacgtggtaa
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