Sarcophilus harrisii (Tasmanian devil): 100917320
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Entry
100917320 CDS
T02286
Symbol
SCN2A
Name
(RefSeq) sodium channel protein type 2 subunit alpha isoform X2
KO
K04834
voltage-gated sodium channel type II alpha
Organism
shr
Sarcophilus harrisii (Tasmanian devil)
Pathway
shr04742
Taste transduction
Brite
KEGG Orthology (KO) [BR:
shr00001
]
09150 Organismal Systems
09157 Sensory system
04742 Taste transduction
100917320 (SCN2A)
09180 Brite Hierarchies
09183 Protein families: signaling and cellular processes
04040 Ion channels [BR:
shr04040
]
100917320 (SCN2A)
Ion channels [BR:
shr04040
]
Voltage-gated cation channels
Sodium channel, voltage-gated (Nav)
100917320 (SCN2A)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Ion_trans
Na_trans_assoc
Na_trans_cytopl
IQ_SCN5A_C
PKD_channel
ATP-synt_B
IQ
GPHH
IQCJ-SCHIP1
Neur_chan_memb
FUT8_N_cat
K_channel_TID
Motif
Other DBs
NCBI-GeneID:
100917320
NCBI-ProteinID:
XP_003763960
Ensembl:
ENSSHAG00000006532
LinkDB
All DBs
Position
3:complement(408863013..409013947)
Genome browser
AA seq
2007 aa
AA seq
DB search
MAQSVLVPPGPDSFRYFTRESLAAIEQRIAEEKATKSKQGRKDEDDENGPKANSDLEAGK
SLPFIYGDIPPGMVSEPLEDLDPYYINKKTFIVLNKGKAIFRFSATSALYILTPFNPIRK
IAIKILVHSLFSMLIMCTILTNCVFMTMSNPPDWTKNVEYTFTGIYTFESLIKILARGFC
LEGFTFLRDPWNWLDFTVITFAYVTEFVNLGNVSALRTFRVLRALKTISVIPGLKTIVGA
LIQSVKKLSDVMILTVFCLSVFALIGLQLFMGNLRNKCLQWPPDNSTFEINITSYFNSSW
DGNGTYYNKTVSTFNWDDYIEDKSHFYILEGQNDALLCGNSSDAGQCPEGYICVKAGRNP
NYGYTSFDTFSWAFLSLFRLMTQDFWENLYQLTLRAAGKTYMIFFVLVIFLGSFYLINLI
LAVVAMAYEEQNQATLEEAEQKEAEFQQMLEQLKKQQEEAQAAAAAASAESREFSGTGGG
GGFSESSSEASKLSSKSAKERRNRRKKRKQKEQSGEEEKQEEEFHKSESEDSIRRKGFRF
SIEGNRLTYEKRFSSPHQSLLSIRGSLFSPRRNSRTSIFSFRGRAKDIGSENDFADDEHS
TFEDNDSRRDSLFVPHRHGERRHSNVSQASRSSRVLPILPVNGKMHSSVDCNGVVSLVGG
PSALTSPTGQLLPEGTTTETEIRKRRSSSYHVSIDLLEDPSGRQRAMSIASILTNTMEEL
EESRQKCPPCWYKFANTCLIWDCCEPWLKVKHIVSLIVMDPFVDLAITICIVLNTLFMAM
EHYPMTEQFSGVLYVGNLVFTGIFTAEMFLKIIAMDPYYYFQEGWNIFDGLIVSLSLMEL
GLANVEGLSVLRSFRLLRVFKLAKSWPTLNMLIKIIGNSVGALGNLTLVLAIIVFIFAVV
GMQLFGKSYKECVCKISNDCELPRWHMHDFFHSFLIVFRVLCGEWIETMWDCMEVAGQTM
CLTVFMMVMVIGNLVVLNLFLALLLSSFSSDNLAATDDDNEMNNLQIAVGRMQKGIDYVK
RKLREFIQKAFVRKQKALDEIKPLEDLNNKKDSCISNHTTVEIGKDLNYLKDGNGTTSGI
GSSVEKYVIDESDYMSFINNPSLTVTVPIAVGESDFENLNTEEFSSESDLEESKEKLNAS
SSSEGSTVDVGAPAEGEQPEAEPEEALEPEACFTEGCVRKFKCCQVSIEEGRGKLWWNLR
KTCYKIVEHNWFETFIVFMILLSSGALAFEDIYIEQRKTIKTMLEYADKVFTYIFILEML
LKWVAYGFQMYFTNAWCWLDFLIVDVSLVSLTANALGYSELGAIKSLRTLRALRPLRALS
RFEGMRVVVNALLGAIPSIMNVLLVCLIFWLIFSIMGVNLFAGKFYHCINTTTGEMFDIS
VVNNLSECQALIDSNQTARWKNVKVNFDNVGLGYLSLLQVATFKGWMDIMYAAVDSRNVE
WQPKYEDNLYMYLYFVIFIIFGSFFTLNLFIGVIIDNFNQQKKKFGGQDIFMTEEQKKYY
NAMKKLGSKKPQKPIPRPANKFQGMVFDFVTRQVFDISIMILICLNMVTMMVETDDQSQE
MTNILYWINLVFIVLFTGECVLKLISLRYYYFTIGWNIFDFVVVILSIVGMFLAELIEKY
FVSPTLFRVIRLARIGRILRLIKGAKGIRTLLFALMMSLPALFNIGLLLFLVMFIYAIFG
MSNFAYVKREVGIDDMFNFETFGNSMICLFQITTSAGWDGLLAPILNSGPPDCDPEKDHP
GSSVKGDCGNPSVGIFFFVSYIIISFLVVVNMYIAVILENFSVATEESAEPLSEDDFEMF
YEVWEKFDPDATQFIEFCKLSDFAAALDPPLLIAKPNKVQLIAMDLPMVSGDRIHCLDIL
FAFTKRVLGESGEMDALRIQMEERFMASNPSKVSYEPITTTLKRKQEEVSAVIIQRAYRR
HLLRQKVKKVSCIYKKDKSKEGNGLPIKEDMIIDKLNENSTPEKTDVTPSTTSPPSYDSV
TKPEKEKYEKDKTEKEDKGKDVREGKK
NT seq
6024 nt
NT seq
+upstream
nt +downstream
nt
atggcacaatcagtgctggtaccaccaggacctgacagctttcgctacttcaccagggaa
tcccttgctgctattgagcaacgcattgcagaagaaaaagctacaaaatccaaacaagga
cgaaaggatgaggatgatgaaaatggccccaaagcaaatagtgatttggaagcaggaaaa
tccctcccatttatttatggagacattccacccggaatggtgtcagagcccttggaggac
ctggatccatactatatcaataaaaaaacttttatagtattgaataaagggaaggcaatc
ttccgattcagtgccacatctgccctgtacattttaactcctttcaaccctattagaaaa
atagctattaagattttggtacattctttattcagcatgctcattatgtgcactattctc
accaattgtgtgtttatgaccatgagtaaccctccagactggacaaagaatgtagagtac
acattcacaggaatttatacctttgaatcgcttattaaaattcttgcaaggggcttctgt
ttagaaggtttcacatttcttcgggacccctggaactggcttgatttcactgtcattact
tttgcgtatgtaacagaatttgtaaacctaggcaatgtttcagctcttcgaactttcaga
gtcttgagagctttgaaaactatttctgtaatcccaggactgaagactattgtgggggcc
ctgatccagtcagtgaagaagctttctgatgtcatgatcctgactgtgttttgtctgagt
gtatttgctctcattggactacagttgttcatgggcaacttgaggaataaatgtttgcaa
tggcccccagataactctacctttgaaataaacattacttcctactttaatagctcatgg
gatggaaatggtacctattacaataagacagtgagcacatttaactgggatgactacatt
gaggacaaaagtcatttttacattttagaagggcaaaatgatgcattgctttgtggtaac
agttctgatgcaggtcaatgtccagagggatatatatgtgtgaaagctggcagaaacccc
aactatggctacacaagctttgacacattcagttgggctttcctgtccctgtttcgcctg
atgactcaggacttctgggaaaatctttatcaactgacacttcgtgcagctggcaagaca
tatatgatattttttgtcctggtaattttcttgggttctttctatcttataaatttgatt
cttgctgtggtcgccatggcctatgaagaacaaaatcaggccactttggaagaggcagag
cagaaggaggctgaatttcagcagatgttggaacaacttaagaagcaacaagaagaagct
caggcagcagcagcagcagcatctgcagaatctagagaattcagtggaactggtggggga
ggaggcttctcagagagctcttcagaagcatcaaagctgagctcaaaaagtgcaaaggaa
aggaggaacagaagaaagaaaaggaaacagaaagaacagtctggagaagaagagaagcaa
gaagaggaatttcataaatctgaatctgaagatagtatcagaaggaaaggttttcgtttt
tccattgaaggaaatcgcttgacttatgaaaaaagattctcttctccccaccagtctctg
ttgagcatccgcggctctcttttttctccaagacgcaacagccgaacgagcatcttcagc
ttcaggggtagagcgaaggatattggttctgaaaatgactttgccgatgacgaacacagc
acttttgaagacaatgacagtagaagagactcgctgtttgttccacatagacacggagaa
cggcgccacagtaacgtcagtcaggcgagccggtcatctcgggtgctgcccatattgccc
gtgaatggaaaaatgcacagctcagtggattgcaatggcgtcgtttcgctggttggtgga
ccgtcagccctgacgtcaccaacggggcaactgttgccagagggtaccactacagaaaca
gaaataagaaagagacgatctagttcttatcatgtgtccatagatttgctagaagaccct
tctggaaggcaaagagcaatgagtatagccagtatactgaccaacacaatggaagaactt
gaagaatccagacagaaatgcccaccatgttggtataaatttgctaacacatgtttgatc
tgggattgctgtgaaccatggctaaaagtgaagcacatcgtcagtctcattgtgatggac
ccatttgttgacctggcaattaccatctgcattgtcttgaatactctattcatggccatg
gaacattatcctatgactgaacagtttagtggggtgctttatgtaggaaacctggttttt
actggaatcttcacagcagaaatgtttctcaagataattgccatggacccctattattat
ttccaagaaggctggaatatttttgacggtttaattgtcagccttagtttaatggagctt
ggcctggcaaatgtagaaggactttctgtactcagatcattcagactgcttcgagttttc
aagttggcaaaatcttggcccacgttgaatatgttgataaagatcattggtaactcagtc
ggggctctgggaaacctgaccttggtactggccatcattgtcttcatttttgctgtggtc
ggcatgcagctctttggcaagagctacaaagaatgtgtctgcaagatctccaatgactgt
gaattgccacgctggcacatgcatgacttcttccattccttcctgattgtgttccgggta
ctgtgtggagaatggatagagaccatgtgggactgtatggaggtggcaggccaaaccatg
tgtcttactgtcttcatgatggtcatggtgattggaaatctagtggtattgaacctgttt
ctagctttgctactgagctcctttagttcagacaaccttgctgccacagatgatgataat
gaaatgaataatctccagattgctgtgggaaggatgcagaagggaatagattatgtgaaa
agaaaattacgtgaatttatccagaaagcctttgttagaaaacagaaagctttggatgaa
atcaaaccacttgaggatctaaacaataagaaagacagctgtatttctaaccataccaca
gtagaaataggcaaggatctgaattatcttaaagatgggaatggaacaaccagtggaata
ggcagcagtgttgaaaaatatgttattgatgaaagtgactacatgtcattcataaataac
cccagcctcactgtaacagtaccaattgctgttggagaatctgactttgagaatttgaat
acagaagaattcagcagtgaatcagatctagaggaaagcaaagagaagttaaatgcatct
agttcgtctgaaggtagcacggtggatgtgggagcccctgcagaaggagaacagccagaa
gcagaaccagaagaagccctggagccagaagcctgcttcacagaaggctgcgtacggaaa
ttcaagtgttgtcaagtcagcatagaagaaggcagagggaaactctggtggaacttgaga
aaaacttgctataagatagtggaacataattggtttgagaccttcattgtcttcatgatc
ctcctaagtagtggtgctctggcctttgaagacatatatattgagcaacgaaaaacaatt
aagacaatgttggaatatgctgacaaagttttcacatacattttcattctggaaatgctt
ctaaagtgggttgcatatggtttccaaatgtattttacaaatgcatggtgctggctggac
ttccttattgttgatgtctctttggtcagcttaactgcaaatgccttgggctactcagag
cttggtgccatcaaatctcttcggacactgagagctttgaggcccctaagagccttatct
cggtttgaaggaatgagggtggttgtgaatgcccttttgggtgcaatcccctctatcatg
aatgtacttctggtctgtctgatattttggctaatattcagtatcatgggagtgaatctt
ttcgctggcaagttttaccactgtatcaacaccaccactggagagatgtttgacataagt
gttgtcaacaatttgagtgaatgccaggctcttatagacagtaatcaaactgcccgatgg
aaaaatgtgaaagtaaactttgataatgtgggacttggatatctttctttgttacaagtg
gctacatttaaaggatggatggatatcatgtatgcagctgtagattcacgaaatgtagag
tggcaacccaagtatgaagataatctatatatgtatctttattttgtcatctttataatt
tttggatcattcttcactctgaaccttttcattggtgtcatcatagataacttcaatcag
cagaaaaagaagtttggaggtcaagatatctttatgacagaagaacagaagaaatactac
aatgccatgaaaaaactagggtccaagaaaccacaaaaacctatacctcgacctgcgaat
aaattccaaggaatggtctttgattttgtaaccagacaagtttttgatatcagcatcatg
attctcatctgcctcaacatggtcaccatgatggtggagactgatgatcagagtcaagaa
atgactaatattttgtattggattaacctagtattcattgtcctcttcactggagaatgt
gtgctgaagctgatctctcttcgctactattattttaccataggatggaatatatttgat
tttgtggtggtcattctctccattgttggtatgtttctagcagagctgatagaaaaatat
ttcgtgtcccctaccctgtttcgagtgatccgtctcgccaggattggacgaatccttcgt
cttattaaaggagcgaaggggatccgcaccctgctctttgctttaatgatgtccctccct
gctctatttaacatcgggctcctgctcttcctggtcatgtttatctatgctatctttgga
atgtccaactttgcctatgtcaaaagggaagttggaatcgacgatatgttcaactttgaa
acctttggcaacagcatgatctgcctcttccaaattaccacatcagctggttgggatggt
ttgcttgcacccattcttaacagcggaccaccagactgtgaccctgaaaaagatcaccct
ggaagctccgtcaaaggcgattgtggcaacccctctgttgggattttcttttttgtcagc
tacatcattatctcattcctggtggttgtgaacatgtacattgctgttatcctggagaat
ttcagtgttgcaactgaagagagtgcggagccactgagtgaggatgactttgagatgttc
tatgaggtttgggagaagtttgatcctgatgctacccagttcatagagttctgtaaactc
tctgattttgcagctgccctagatccacctcttcttatagcaaaaccaaacaaagtccaa
ctcatagccatggatctgcccatggtaagtggggaccgaattcactgccttgacatctta
tttgctttcacaaagcgtgttttgggagagagtggggaaatggatgctctccgaatacag
atggaagagcgcttcatggcatctaatccttccaaagtctcctatgagccaatcaccact
actctgaaacgcaaacaggaggaagtgtccgcagtcataatccagcgggcttaccgacgt
catctcttgaggcaaaaagttaaaaaagtttcatgtatatataaaaaagataaaagtaaa
gaaggcaatggactacctatcaaagaagatatgattattgataaactgaatgagaattca
acaccagagaaaactgatgtgaccccttccaccacctctccaccttcatatgatagtgta
acaaaacctgaaaaggaaaaatatgaaaaagacaaaacggaaaaggaagacaaaggaaaa
gatgtcagggaaggcaaaaagtaa
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integrated database retrieval system
