Sarcophilus harrisii (Tasmanian devil): 100927376
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Entry
100927376 CDS
T02286
Symbol
CAPN1
Name
(RefSeq) calpain-1 catalytic subunit isoform X1
KO
K01367
calpain-1 [EC:
3.4.22.52
]
Organism
shr
Sarcophilus harrisii (Tasmanian devil)
Pathway
shr04141
Protein processing in endoplasmic reticulum
shr04210
Apoptosis
shr04217
Necroptosis
shr04218
Cellular senescence
shr04382
Cornified envelope formation
shr05010
Alzheimer disease
shr05022
Pathways of neurodegeneration - multiple diseases
Brite
KEGG Orthology (KO) [BR:
shr00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
04141 Protein processing in endoplasmic reticulum
100927376 (CAPN1)
09140 Cellular Processes
09143 Cell growth and death
04210 Apoptosis
100927376 (CAPN1)
04217 Necroptosis
100927376 (CAPN1)
04218 Cellular senescence
100927376 (CAPN1)
09150 Organismal Systems
09158 Development and regeneration
04382 Cornified envelope formation
100927376 (CAPN1)
09160 Human Diseases
09164 Neurodegenerative disease
05010 Alzheimer disease
100927376 (CAPN1)
05022 Pathways of neurodegeneration - multiple diseases
100927376 (CAPN1)
09180 Brite Hierarchies
09181 Protein families: metabolism
01002 Peptidases and inhibitors [BR:
shr01002
]
100927376 (CAPN1)
Enzymes [BR:
shr01000
]
3. Hydrolases
3.4 Acting on peptide bonds (peptidases)
3.4.22 Cysteine endopeptidases
3.4.22.52 calpain-1
100927376 (CAPN1)
Peptidases and inhibitors [BR:
shr01002
]
Cysteine peptidases
Family C2: calpain family
100927376 (CAPN1)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Peptidase_C2
Calpain_III
EF-hand_6
EF-hand_1
EF-hand_8
EF-hand_7
CAPN13-like_C_EFh
Motif
Other DBs
NCBI-GeneID:
100927376
NCBI-ProteinID:
XP_003774221
Ensembl:
ENSSHAG00000003383
UniProt:
G3VKY8
LinkDB
All DBs
Position
6:complement(242081320..242116111)
Genome browser
AA seq
741 aa
AA seq
DB search
MTLGRRPSQPLPSSKVEETEAQSYKTMTEEVIVPVYCTGVSAQVQKQRAKDLGLGLHENS
IKYLGQDYEKLRSQCLQSGVLFEDDTFPASAHSLGFKDLGPKSSKTYGIKWKRPTELLPN
PRFIVDGATRTDICQGALGDCWLLAAIASITLNDTILHRVVPHGQSFQEGYAGIFHFQLW
QFGEWIDVVVDDLLPTKDGKLLFVHSAQGNEFWSALLEKAYAKVNGSYEALAGGSTSEGF
EDFTGGVTEWFDLKKPPSDLYYIILKALERGSMLGCSIDITSAFDMEAVTFKKLVKGHAY
SVTGAQQVTHRGRSVNLIRMRNPWGEVEWTGPWSDNSSEWSQVAPSDRQQLQVKMEDGEF
WMSFSDFLREFTRLEICNLTPDTLKSQKFRKWNTTLYDGTWRRGSTAGGCRNYPATFWVN
PQFKIKLEEVDDPSENFCGRDDGCSFLLALMQKNRRRERRFGRDMETIGFAIYEVPDHLV
GQPSVHLKRDFFLSHSSLARSEQFVNLREVSSRICLPPGEYIVVPSTFEPNKEGDFVLRF
FSEKKAGTEELDDKIEADLPDEKVLSEEEIDSTFKDLFKQLAGEDEEISVKELQTILNKI
ISKHKDLRTDGFSKESCRSMVNLMDRDGNGKLGLVEFNILWNRIKNYLSIFRKYDLDKSG
SMSSYEMRMALEAAGYKLNKKLHGLIITRYSEADLNLNFDSFVCCLVRLETMFRFFQALD
TDKDGIVNFDLFRWLQLTMFA
NT seq
2226 nt
NT seq
+upstream
nt +downstream
nt
atgactctgggaaggcgtccatctcaaccccttccctcctctaaggtggaagaaacggag
gcccaatcctacaagacaatgacagaagaggtcatcgtccctgtgtactgcacgggggtg
tctgcccaagtgcaaaaacagagagcaaaggacctaggactgggcctccatgaaaactcc
atcaagtacctgggccaggattacgagaagctacggtcccagtgcctgcagtctggggtc
ctttttgaggatgatactttccccgctagtgcccattccctgggcttcaaggacctggga
cccaaatcctccaaaacctatggcattaaatggaaaaggcccacggaacttttaccaaac
cctcggtttattgtggatggggccacccgaacagacatttgtcagggagctctgggggac
tgctggctcctggcagccatcgcctccatcaccctgaacgacaccatcctgcaccgggtg
gtgcctcatgggcagagttttcaggaaggctatgctggcatctttcacttccagttgtgg
cagtttggggagtggatcgatgtggttgtggacgacctgctgccaaccaaggatggaaag
ctgctctttgtgcactcggcccaaggcaatgagttctggagtgccctgcttgagaaagcc
tacgccaaggtgaatggtagctatgaagcccttgctgggggtagcacctcagagggattt
gaagactttaccggaggtgttacagaatggtttgacctcaagaaaccacctagtgatctc
tactacatcattctgaaggccctggaacgggggtccatgctgggctgttccatcgatatc
accagcgcctttgacatggaagccgtcaccttcaagaaactggtgaagggccacgcctac
tcggtgaccggagcccagcaggtgacccatcggggccgctcggtgaacctaattcgaatg
cggaacccgtggggtgaggtggagtggacggggccttggagtgacaattcctctgagtgg
agccaggtggccccctctgataggcaacagctccaggtcaagatggaggatggggagttc
tggatgtccttcagtgactttcttcgggagttcacccgcctggagatctgcaacctgacc
ccagacaccctcaagtcccaaaagttccgcaaatggaacacaaccctgtatgatggcacc
tggagacgtggaagcacagcgggtggctgcagaaactacccagccaccttctgggtgaac
ccccagtttaaaatcaagctggaggaggtggatgatccctccgaaaatttctgtggtcga
gatgacggctgcagcttcctgctggcgctcatgcagaagaaccggcgccgagagcggcgc
tttggccgggacatggagaccattggctttgcgatctatgaagtccctgatcacttggtg
ggccagccttctgtgcacctgaagcgggacttcttcctgtcgcactcgtccctggcccgc
tcggagcagttcgtcaacctgcgggaggtcagctcgcgcatctgcctgcctcccggggag
tacatcgtggtgccctccacctttgagccaaacaaggagggggactttgtgctgcgcttc
ttctctgagaagaaggccgggacggaggagctggatgacaagattgaagctgacctgccc
gatgagaaagtgctttccgaagaagagatcgatagcaccttcaaggatctttttaagcag
ttggctggggaggacgaggagatcagcgtcaaggaactgcagaccatcctgaacaaaatc
atcagcaaacacaaagatctccggaccgatggcttcagtaaggagtcgtgccgaagtatg
gtgaatctcatggatcgggacggcaatgggaaactggggctggtggagtttaacatcctc
tggaaccgaatcaaaaattacctgagcatctttcgaaagtatgacctagacaagtcgggc
agcatgagttcctacgagatgcggatggctcttgaggcagcagggtacaagttgaataag
aagctgcatggactaatcataactcgctactcagaggctgacctgaacttgaactttgac
agctttgtgtgctgtctcgtgcggctggagaccatgttccgatttttccaggccctggac
acagacaaagatggaattgtgaattttgacttatttaggtggttacagttgaccatgttt
gcgtga
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