Sarcophilus harrisii (Tasmanian devil): 100931522
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Entry
100931522 CDS
T02286
Symbol
CLP1
Name
(RefSeq) polyribonucleotide 5'-hydroxyl-kinase Clp1 isoform X1
KO
K14399
polyribonucleotide 5'-hydroxyl-kinase [EC:
2.7.1.78
]
Organism
shr
Sarcophilus harrisii (Tasmanian devil)
Pathway
shr03015
mRNA surveillance pathway
Brite
KEGG Orthology (KO) [BR:
shr00001
]
09120 Genetic Information Processing
09122 Translation
03015 mRNA surveillance pathway
100931522 (CLP1)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
shr03019
]
100931522 (CLP1)
Enzymes [BR:
shr01000
]
2. Transferases
2.7 Transferring phosphorus-containing groups
2.7.1 Phosphotransferases with an alcohol group as acceptor
2.7.1.78 polynucleotide 5'-hydroxyl-kinase
100931522 (CLP1)
Messenger RNA biogenesis [BR:
shr03019
]
Eukaryotic type
mRNA processing factors
3' end processing
Pre-mRNA cleavage factor IIm (CFIIm)
100931522 (CLP1)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
CLP1_P
CLP1_N
Clp1
AAA_18
TniB
ATP_bind_1
MMR_HSR1
AAA_16
AAA_22
nSTAND3
CbiA
Motif
Other DBs
NCBI-GeneID:
100931522
NCBI-ProteinID:
XP_012408143
Ensembl:
ENSSHAG00000015695
LinkDB
All DBs
Position
6:complement(248803268..248819929)
Genome browser
AA seq
426 aa
AA seq
DB search
MAEESNDEKKPLTKFELERETELRFEVEASQSAQLELLAGMAEIFGTELTRNKKFTFDAG
AKVAVFTWHGCSLQLSGRTEVAYVSKDTPMLLYLNTHTALEQMRRQAEREEERGPRVMVV
GPTDVGKSTVCRLLLNYAVRLGRRPTYVELDVGQGSVSIPGTMGALYIERPADVEEGFSI
QAPLVYHFGSTTPGTNIKLYNKITSRLADVFNQRCEVNRRASVSGCVINTCGWVKGSGYQ
ALVHAASAFEVDVVVVLDQERLYNELKRDLPHFVRTVLLPKSGGVVERSKDFRREYRDER
IREYFYGFRGCFYPHAFNVKFSDVKIYKVGAPTIPDSCLPLGMSQEDNQLKLVPVTPGRD
MVHHLLSVSTAEGTEENISETSVAGFIVVTSVDLEHQVFTVLSPAPRPLPKNFLLIMDIR
FMDLKR
NT seq
1281 nt
NT seq
+upstream
nt +downstream
nt
atggcagaagaatccaatgatgaaaagaagccactgactaaattcgaattagaacgggag
acagaactgcgttttgaggtggaggcttcgcagtcagcccagctggagctcctggccggc
atggccgagatctttggcacagaactgacccgaaacaaaaagttcacttttgatgcaggt
gccaaagttgctgtcttcacttggcatgggtgttctctccagctgagtgggcgcaccgag
gtggcttatgtctccaaggacacacccatgctcctttatcttaacactcacacggccctg
gagcagatgagacggcaagcagagcgtgaggaagagcgaggtcctcgagtgatggtagtc
ggccccacggacgtgggcaagtccacagtatgccgccttttactcaattatgctgtgcga
ctaggccggcggcccacctatgtggagctggatgtaggtcaaggctctgtgtccattcct
ggaaccatgggagctctttacattgagcgacccgctgatgtagaggagggcttctctatc
caggctcctctggtctatcattttggctccactacacctggtaccaacatcaagctttac
aataagattacatcccgactggcagatgtcttcaatcaacgctgtgaggtgaaccgtcga
gcctctgtcagtggctgtgtcattaacacctgtgggtgggtcaagggctctggttaccag
gccttggtgcatgctgcttctgcttttgaggtggacgtggtggtagtgctggaccaggag
cgactgtacaatgagttgaaacgggacttgccccactttgtgcgtactgttctactcccc
aagtcaggaggcgtggttgaacgatcaaaggacttccgccgggagtatagggatgagcgc
atccgagaatatttttatggtttccggggctgtttttatccccatgccttcaatgtcaaa
ttctccgatgtgaaaatctacaaggtgggggcccccaccatcccagactcatgtctccct
ttgggaatgtcacaggaggacaatcaactgaaactggtaccagttaccccagggcgagac
atggtacatcacctcttgagtgtcagcacagctgagggcactgaggagaacatctctgag
accagtgtggctggcttcattgtggtgactagtgtggacctggagcaccaggtttttact
gtgctctctccggcccctcgcccactgcctaagaacttcctcctcatcatggacatccgc
ttcatggatctcaagcgctga
DBGET
integrated database retrieval system
