Staphylococcus hyicus: SHYC_10925
Help
Entry
SHYC_10925 CDS
T03578
Symbol
rpoB
Name
(GenBank) DNA-directed RNA polymerase subunit beta
KO
K03043
DNA-directed RNA polymerase subunit beta [EC:
2.7.7.6
]
Organism
shu
Staphylococcus hyicus
Pathway
shu03020
RNA polymerase
Brite
KEGG Orthology (KO) [BR:
shu00001
]
09120 Genetic Information Processing
09121 Transcription
03020 RNA polymerase
SHYC_10925 (rpoB)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
shu03021
]
SHYC_10925 (rpoB)
03400 DNA repair and recombination proteins [BR:
shu03400
]
SHYC_10925 (rpoB)
Enzymes [BR:
shu01000
]
2. Transferases
2.7 Transferring phosphorus-containing groups
2.7.7 Nucleotidyltransferases
2.7.7.6 DNA-directed RNA polymerase
SHYC_10925 (rpoB)
Transcription machinery [BR:
shu03021
]
Prokaryotic type
Bacterial type
RNA polymerase
Core subunits
SHYC_10925 (rpoB)
DNA repair and recombination proteins [BR:
shu03400
]
Prokaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TCR (transcription coupled repair) factors
DNA-directed RNA polymerase complex (RNAP)
SHYC_10925 (rpoB)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNA_pol_Rpb2_6
RNA_pol_Rpb2_2
RNA_pol_Rpb2_3
RNA_pol_Rpb2_7
RNA_pol_Rpb2_45
RNA_pol_Rpb2_1
SH3_5
ATP-grasp_6
Motif
Other DBs
NCBI-ProteinID:
AJC96911
LinkDB
All DBs
Position
complement(2243977..2247528)
Genome browser
AA seq
1183 aa
AA seq
DB search
MAGQFVQYGRHRKRRNYARISEVLELPNLIEIQTKSYDWFLKEGLLEMLRDISPIEDFTG
NLSLEFVDYRLGEPKYDLEESKNRDATYAAPLRVKVRLIIKETGEVKDQEVFMGDFPLMT
ETGTFVINGAERVIVSQLVRSPSVYFNEKLDKNGRVNYDATVIPNRGAWLEYETDAKDVV
YVRIDRTRKLPLTVLLRALGYSTDQEIIDLLGDNEYLRNTLEKDSTENTEQALLEIYERL
RPGEPPTVENAKSLLYSRFFDPKRYDLASVGRYKANKKLHLKHRLFNQKLAEPIVNTETG
EIVVEEGTVLDRRKLDDIMDVLESNANAQVYELPNSIVDEPVEVQSIKVYVPNDDEARTT
TVIGNAFPDSEVKCITPADIVASMSYFFNLLHGIGYTDDIDHLGNRRLRSVGELLQNQFR
IGLSRMERVVRERMSIQDTESITPQQLINIRPVIASVKEFFGSSQLSQFMDQANPLAELT
HKRRLSALGPGGLTRERAQMEVRDVHYSHYGRMCPIETPEGPNIGLINSLSSYARVNEFG
FIETPYRKVDLETNTITDQIDYLTADEEDSYVVAQANSRLDENGRFIDDEIVCRFRGNNT
TMAKEKMDYMDVSPKQVVSAATACIPFLENDDSNRALMGANMQRQAVPLLNPESPFVGTG
MEHVAARDSGAAVLAKHRGRVEHVQSSEILVRRLVDDNGTEVEGELDRYPLAKFKRSNSG
TCYNQRPIIAAGDIVEKNEILADGPSMELGEMALGRNVVVGFMTWDGYNYEDAVIMSERL
VKDDVYTSIHIEEYESEARDTKLGPEEITRDIPNVSENALKNLDDRGIVYVGAEVKDGDI
LVGKVTPKGVTELTAEERLLHAIFGEKAREVRDTSLRVPHGAGGIVLDVKVFNREDGDDS
LSPGVNQLVRVYIVQKRKIHVGDKMCGRHGNKGVISKIVPEEDMPYLPDGRPIDIMLNPL
GVPSRMNIGQVLELHLGMAAKNLGIHVASPVFDGANDDDVWSTIEEAGMARDGKTVLYDG
RTGEPFDNRISVGVMYMLKLAHMVDDKLHARSTGPYSLVTQQPLGGKAQFGGQRFGEMEV
WALEAYGAAYTLQEILTYKSDDTVGRVKTYESIVKGENISRPSVPESFRVLMKELQSLGL
DVKVMDEQDNEIEMRDLEEDDVPDRKVNLQQPSVPESQRDITE
NT seq
3552 nt
NT seq
+upstream
nt +downstream
nt
ttggcaggtcaatttgtccaatatggaagacatcgtaaacgtagaaactacgcaagaatc
tcagaagtattagaattacctaatttaattgagattcaaacaaaatcatatgattggttt
ttaaaagaaggcctattagaaatgcttcgcgacatttctccaattgaggacttcacagga
aacctttctttagaatttgttgattatagactaggtgaaccgaagtacgatttagaagaa
tcaaaaaaccgtgatgcaacatacgcggcgcctttacgtgttaaagtacgtttaattatt
aaagaaactggcgaagtgaaagatcaggaagtcttcatgggggatttcccattaatgaca
gaaactggaacattcgtcatcaatggtgcagaacgtgtaattgtatcacaattagtacgt
tcaccatccgtttacttcaacgagaaattagataaaaatggtcgtgtcaactacgatgca
actgtaattcctaaccgtggtgcttggttagaatatgaaacagatgcgaaagacgttgtt
tatgttcgtatcgatagaacacgtaaattgccattaactgtgttattacgtgctttaggt
tactctacagatcaagaaattattgatttattaggagataacgaatacttacgtaacaca
ttagaaaaagatagcacagaaaatacagaacaagctttacttgaaatttatgaacgttta
cgcccaggtgaaccaccaactgtagaaaatgcgaagagtttattatactctcgtttcttt
gaccctaaacgttacgatttagctagcgtaggacgttataaagcaaataaaaaattacac
ttaaaacaccgcttattcaatcaaaaattagctgaaccaatcgtgaatactgaaacaggc
gaaatcgtggttgaagaaggtacagttttagaccgtcgtaaattagacgacattatggat
gtcttagaatcgaatgcgaacgcacaagtttatgagcttccaaatagcattgtagatgaa
ccggttgaagttcaatctattaaggtttatgttccaaatgacgatgaagcccgcacaacg
acagtcattggtaatgcattccctgattcagaagtgaaatgtattacaccagcggatatc
gtggcatcaatgtcttacttctttaacttattacatggtatcggctatacagatgatatt
gaccacttaggtaaccgtcgtttgcgttcagtaggcgaattgttacaaaaccaattccgt
atcggtttatctcgtatggaacgtgttgtacgtgaaagaatgtctattcaagacacagaa
tcgattacgccacaacaattaatcaacattcgtcctgtcattgcatcagtaaaagagttc
tttggtagttctcaattatcacaattcatggaccaagcaaacccgttagcagagttaacg
cacaaacgtcgtttatctgcattaggacctggtggtttaacgcgtgaacgtgcccaaatg
gaagtgcgtgacgttcactactctcactacggtcgtatgtgtccaatcgaaacgccagag
ggtccaaacattggattaatcaactcactttcaagttatgcgcgtgttaacgaatttggt
ttcattgaaacgccttaccgtaaagtggaccttgaaacgaatacaataacagatcaaatt
gattacttaactgcggatgaagaagacagttatgttgttgcccaagcgaactcacgttta
gatgaaaatggacgctttatcgacgacgaaatcgtttgtcgtttccgtgggaacaataca
acaatggctaaagaaaaaatggattacatggacgtatcaccgaaacaagttgtttctgcg
gcgacagcatgtatcccattcttagaaaacgatgactcgaaccgtgcattaatgggtgcg
aacatgcaacgtcaagccgtgcctttattgaacccagagtcaccgtttgtaggtacaggt
atggagcacgtcgctgcacgtgactcaggtgctgcagtacttgcgaaacatcgtggacgt
gttgaacacgttcaatcaagtgaaatccttgtacgccgtcttgttgatgacaacggtaca
gaggttgaaggcgaattagaccgctatccattagcgaagtttaaacgttcaaactctggt
acatgttataaccaacgcccaatcattgctgcaggagatatcgttgagaaaaatgaaatt
cttgcggatggtccttctatggaacttggtgaaatggcactaggtcgtaatgttgttgtt
ggattcatgacttgggacggttataactacgaggatgctgtaatcatgagtgaacgtctt
gtaaaagatgacgtttacacatctattcatattgaagaatatgaatcagaagcacgtgat
acaaaacttggacctgaagaaattacacgtgatattccgaacgtatctgaaaatgcactt
aaaaacttagatgatcgtggtattgtttatgtaggtgcggaagttaaagatggtgacatc
ttagtcggtaaagttacacctaaaggggttactgaacttactgctgaagaacgtctttta
catgccatctttggtgaaaaagcacgtgaagtacgtgatacgtcattacgtgtaccacac
ggtgcaggcggtatcgtattagatgttaaagtcttcaaccgtgaagatggagatgattca
ttatctccaggtgttaaccaactcgtgcgtgtatatattgtacaaaaacgtaaaattcac
gtaggggataaaatgtgtggtcgtcacggtaacaaaggtgtcatctctaaaatcgttcct
gaagaagatatgccatatttaccagacggacgtccaatcgatatcatgttaaacccactg
ggtgtaccatcacgtatgaacatcggacaagtattagagctacacttaggtatggcggct
aaaaacttaggtatccatgttgcatcaccagtatttgacggtgcgaacgatgatgacgtt
tggtcaacaatcgaagaagctggtatggcacgtgacggtaaaacagtactttacgatggt
cgaacaggtgaaccattcgataaccgtatttctgttggggtaatgtacatgttgaaactt
gcgcacatggttgatgataaacttcatgcgcgttcaactggaccatactcactcgttaca
caacaaccacttggtggtaaagcacaattcggtggacaaagatttggtgagatggaggta
tgggcacttgaagcatatggtgcagcgtacacattacaagaaatcctcacatacaaatca
gatgacacggtaggtcgtgtgaaaacttacgaatctatcgttaaaggtgaaaacatttct
agaccaagcgttccagaatcattccgcgtattgatgaaagaacttcaaagtttaggatta
gatgtcaaagtgatggatgaacaagataatgaaattgaaatgcgtgacttagaagaggac
gacgtgcctgatcgcaaagtcaatttacaacaaccaagcgttccagaatcacaaagagat
atcactgagtaa
DBGET
integrated database retrieval system
