Stella humosa: STHU_22400
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Entry
STHU_22400 CDS
T06078
Name
(GenBank) ATP-dependent DNA helicase RecQ
KO
K03654
ATP-dependent DNA helicase RecQ [EC:
5.6.2.4
]
Organism
shum
Stella humosa
Pathway
shum03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
shum00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
STHU_22400
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
shum03019
]
STHU_22400
03400 DNA repair and recombination proteins [BR:
shum03400
]
STHU_22400
Enzymes [BR:
shum01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.4 DNA 3'-5' helicase
STHU_22400
Messenger RNA biogenesis [BR:
shum03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Helicases
STHU_22400
DNA repair and recombination proteins [BR:
shum03400
]
Prokaryotic type
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
SHDIR (short-homology-dependent illegitimate recombination)
Supressor
STHU_22400
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RQC
DEAD
HRDC
Helicase_C
RecQ_Zn_bind
ResIII
WSD
Motif
Other DBs
NCBI-ProteinID:
BBK31606
LinkDB
All DBs
Position
2361414..2363264
Genome browser
AA seq
616 aa
AA seq
DB search
MAAMSIRHAAQPAVAATAAHSSARTALKTVFGFDAFKPGQEAVVDAVLAGRDVLAVMPTG
SGKSLCYQLPALMRDGPVVVVSPLIALMRDQVRQMRDYGVAAGSLNSANDADENRRVWGA
LRDGTLRLVYAAPERLVREDTVAMLRDCRPSLLAIDEAHCVSQWGHDFRPEYLALGQVRA
ALGGVQTIALTATADAATRADIVARLFEVEPEVFVQGFDRPNLFLAMQPKGSARNQVAAF
VAQRTGANGIVYCSSRKKTEELAEYLRGQGHRALAYHAGLEKERRDEVQDTFQAEDGIVV
VATVAFGMGIDKPDVRYVAHADLPKSVEAYYQEIGRAGRDGLPADTLTLYGLDDMRLRRV
QIEESDASEAQKRVERQRFNALVALCEAPRCRRQTLLAYFGETTEPCGHCDLCLQGVETF
DGTIEAQKAMSAILRTGERFGTEHLVQILTGADTEAIRRFGHDRLPTYGVGKERDANGWR
SIFRQIYAAGLIQIDIVQHGRWTVTDRGRRVLRGEERIEIRRDVMTAGPKVKGKAPPAAA
AAPEDAGLLAALKALRTELAKTQGVPAYVVFADRTLLDMAARRPANADAMRQVHGVGEAK
VARYGDRFLEVVARFR
NT seq
1851 nt
NT seq
+upstream
nt +downstream
nt
atggccgccatgtcgattcgccatgccgcccagcctgccgtcgccgcgacggccgcccac
agttcggcgcgcaccgcgctcaagaccgtcttcggtttcgatgccttcaagccggggcag
gaggcggtggtcgacgccgtgctggccggccgcgacgtgctggcagtgatgccgaccggc
agcggcaagtcgctgtgctaccagcttccggccctgatgcgcgacggcccggtggtggtg
gtgtcgccgctgatcgcgctgatgcgcgaccaggtgcggcagatgcgcgattatggcgtg
gccgccggcagcctgaactcggccaacgatgccgacgagaaccggcgcgtctggggggcc
ttgcgggacggcacgctgcggctggtctatgcagcacccgagcgcctggtgcgcgaggac
accgtcgccatgctgcgcgactgccgcccgtcgctgctggcgatcgacgaggcccattgc
gtctcgcagtggggccatgacttccggccggagtacctggccctggggcaggtgcgggcg
gccctcggcggggtgcagactatcgcactcaccgccaccgccgacgccgccacccgcgcc
gacatcgtcgcccgcctgttcgaggtcgagccggaggtcttcgtccaggggttcgaccgg
ccgaacctgttcctggcgatgcagcccaagggcagcgcgcgcaaccaggtggcggccttc
gttgcccagcggacgggtgccaacggcatcgtctactgctcctcgcgcaagaagaccgag
gaactggcggaatacctgcgcgggcaggggcaccgggcgctggcctaccatgccggcctg
gagaaggagcggcgcgacgaggtgcaggacaccttccaggccgaggacggcatcgtcgtc
gtcgccaccgtcgccttcggcatgggcatcgacaagccggatgtgcgctacgtcgcccat
gccgacctgccgaagtcagtcgaggcctactaccaggagatcggccgcgccggccgcgac
gggctgccggccgacacgctgacgctctatggcctggacgacatgcgcctgcgccgggtg
cagatcgaggagagcgacgcgtcggaggcgcagaagcgggtcgagcggcagcggttcaac
gcgctggtcgcgttgtgcgaggcgccgcgctgccgccgccagacgctgctggcctatttc
ggcgagacgaccgagccgtgcgggcattgcgacctgtgcctgcaaggcgtcgagacattc
gacggcaccatagaggcgcagaaggccatgtcggccatcctgcgcacgggcgagcgcttc
ggcaccgagcatctggtgcagatcctgaccggggccgacacggaggcgatccgccgcttc
ggccatgaccgcctgccgacctatggcgtcggcaaggagcgtgacgccaatggctggcgc
tcgatcttccggcagatctatgccgccggcctgatccagatcgacatcgtccagcatggc
cgctggaccgtcaccgaccgcggccgccgggtgctgcgcggcgaggagcggatcgagatc
cgtcgcgacgtgatgaccgccgggcccaaggtgaagggcaaggcgccgcccgccgccgcc
gcggcacccgaggatgcgggcctactggcggcgctcaaggcgctccgcaccgaactggcc
aagacgcagggcgtgccggcctatgtcgtcttcgccgaccgaacgctgctcgacatggcg
gcccgccggccggccaatgccgacgccatgcgccaggtgcacggcgtcggcgaggccaag
gtcgcgcgctacggcgaccgcttcctggaagtggtggcgcgcttccggtag
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