Shewanella sp. W3-18-1: Sputw3181_0149
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Entry
Sputw3181_0149 CDS
T00453
Name
(GenBank) DNA-directed RNA polymerase, beta subunit
KO
K03043
DNA-directed RNA polymerase subunit beta [EC:
2.7.7.6
]
Organism
shw
Shewanella sp. W3-18-1
Pathway
shw03020
RNA polymerase
Brite
KEGG Orthology (KO) [BR:
shw00001
]
09120 Genetic Information Processing
09121 Transcription
03020 RNA polymerase
Sputw3181_0149
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
shw03021
]
Sputw3181_0149
03400 DNA repair and recombination proteins [BR:
shw03400
]
Sputw3181_0149
Enzymes [BR:
shw01000
]
2. Transferases
2.7 Transferring phosphorus-containing groups
2.7.7 Nucleotidyltransferases
2.7.7.6 DNA-directed RNA polymerase
Sputw3181_0149
Transcription machinery [BR:
shw03021
]
Prokaryotic type
Bacterial type
RNA polymerase
Core subunits
Sputw3181_0149
DNA repair and recombination proteins [BR:
shw03400
]
Prokaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TCR (transcription coupled repair) factors
DNA-directed RNA polymerase complex (RNAP)
Sputw3181_0149
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNA_pol_Rpb2_6
RNA_pol_Rpb2_1
RNA_pol_Rpb2_45
RNA_pol_Rpb2_3
RNA_pol_Rpb2_7
RNA_pol_Rpb2_2
Motif
Other DBs
NCBI-ProteinID:
ABM23002
UniProt:
A1REA7
LinkDB
All DBs
Position
177146..181177
Genome browser
AA seq
1343 aa
AA seq
DB search
MVYSYSEKKRIRKDFGKRPQVLDIPYLLSIQLDSFKKFTDQDPTGERGLEAAFRSVFPIK
SFSGNSELQYVSYKLGEPVFDVKECQIRGVTYSAPLRVKLRMVLYDREAAAGTVKDIKEQ
EVYMGDIPLMTDNGTFVINGTERVIVSQLHRSPGVFFDHDRGKTHSSGKVLYNARIIPYR
GSWLDFEFDPKDALFVRIDRRRKLPATIILRALEYSTQEILDLFFERVEFKIKKDTLVMA
LVPERLRGETASYDIKDAEGSVLVEAGRRITARHIRQLEKTNTTELEVPVEYIVGKYAAQ
DYIDPDTGEVLVSANSEISLEDLAKLSLAGIKDISTLYINELDHGAYISDTLRIDSTTNR
LEALVEIYRMMRPGEPPTKDAAEALFQNLFFSEERYDLSKVGRMKFNRRLSIPDDEGSGV
LSKEDIVAVMKNIIHIRNGFDEVDDIDHLGNRRIRSVGEMAENQFRVGLVRVERAVRERL
SLGDLNELMPQDLINAKPISAAVKEFFGSSQLSQFMDQNNPLSEVTHKRRISALGPGGLT
RERAGFEVRDVHPTHYGRLCPIETPEGPNIGLINSLASFARTNSYGFLETPYRKVIDGVI
TDEVEYLSAIEEGRYVIAQANIEVDANGRMVEEQIACRHKGESTFMRASDIQYMDVSPQQ
IISVAASLIPFLEHDDANRALMGANMQRQAVPTLRSEKPLVGTGIERTLAVDSGVVVVAK
RGGYIDYVDASRIVVKVNEDELRPGEAGIDIYNLTKYTRSNQNTCINQRPCCAVGEPVVR
GDVLADGPSTDLGDLALGQNMRIAFMPWNGYNFEDSILISERVAQEDRFTTIHIQELSCI
ARDTKLGSEEITADIPNVGESALSKLDESGIVYIGAEVKGGDILVGKVTPKGETQLTPEE
KLLRAIFGEKASDVKDSSLRVPNSVKGTIIDVQVFTRDGVEKDKRAVEIEEMHIAQARKD
LSEEFKILEEGVLSRARNLLLGAGFTETQIAAMPRKDVLVQVIDDEAKQTELEQLAEQHE
ELKADFDKKFEIKRRKITQGDDLAPGVLKIVKVYLAVKRTIQPGDKMAGRHGNKGVISKI
CPIEDMPYDEQGNPVDIVLNPLGVPSRMNIGQVLEVHMGAAAKGIGNKITAMLEEQRELA
EVRGYIKQVYELGDEVQQRVDIDSFTDDEVMRLAQNLKGGIPIATPAFDGAKEKEIKQML
ELAGLPTSGQLKLYDGRTGNEFERQVTVGYMYMLKLNHLVDDKMHARSTGSYSLVTQQPL
GGKAQFGGQRFGEMEVWALEAYGAAYTLQEMLTVKSDDVNGRTQMYKNIVDGNHQMQPGM
PESFNVLLKEIRSLGINIELDQE
NT seq
4032 nt
NT seq
+upstream
nt +downstream
nt
atggtttactcctattctgaaaagaagcgtattcgcaaagactttggtaagcgtccacag
gtgttggatattccttaccttttgtctattcagttagactcttttaagaagttcaccgat
caagatcctaccggtgagcgcggtcttgaagccgccttccgtagcgtttttcccatcaag
agcttttctggtaattcagaactgcaatacgtcagctataagcttggcgagcctgttttt
gatgtgaaagagtgtcagatccgcggtgttacgtattcagcaccactacgcgttaaatta
cgcatggtgttgtatgaccgtgaagcagcggcaggcactgtaaaagatattaaagagcaa
gaagtctacatgggcgatatcccattgatgacggataacggtacctttgttatcaacggt
actgagcgtgtaatcgtatctcaattacaccgtagccctggcgtgttcttcgatcatgac
cgtggtaaaacccactcatcgggtaaggtgctgtataacgcacgtattattccttaccgt
ggttcatggcttgactttgaattcgatcctaaagatgcacttttcgtacgtattgaccgt
cgccgtaaattaccagcgaccatcattctgcgtgcattagaatactctactcaagagatc
ctcgacctgttcttcgaacgtgttgagttcaagatcaagaaagatacgttagtcatggcg
ttagttcctgagcgtctgcgtggcgaaactgccagctatgacatcaaggatgctgaaggt
tctgtgctggttgaagcgggccgtcgtattactgcgcgccatattcgccagttagaaaag
actaataccactgaactcgaagtgccagttgaatatatcgtgggcaaatatgctgctcaa
gattatatcgatccggacacgggtgaagttttagtatctgcaaacagtgaaatcagctta
gaagacttagcgaaattatcactggctggcattaaagatatcagcacgttgtatatcaac
gagctagatcatggtgcttatatttcagatacgctgcgtatcgattcaaccactaaccgc
ttagaagcgctggttgaaatctatcgtatgatgcgtcctggcgagccaccaaccaaagat
gcggcagaagcactattccagaacttgttcttcagtgaagaacgctatgacctgtctaaa
gtcggtcgtatgaagttcaaccgtcgtctgagcatccccgatgacgaaggtagcggtgta
ttgtctaaagaagacatcgtcgcggtaatgaagaacatcattcatatccgtaacggtttc
gacgaagtcgatgacatcgatcacttaggtaaccgtcgtattcgtagcgtcggtgaaatg
gctgaaaaccaattccgtgttggtttagtccgtgttgagcgcgctgtgcgtgaacgtcta
tctttaggcgatctgaacgagctgatgccacaagacttaatcaacgctaagccaatttct
gctgcagtgaaagagttcttcggttcttcacagctgtcacaattcatggaccaaaacaac
ccgctgtcagaagtcacgcataagcgtcgtatttctgctcttggccctggtggtttgact
cgtgaacgtgcaggctttgaagtccgtgacgtacatccaacgcattatggtcgtttatgt
ccaattgagacccctgaaggtccaaacattggtctaatcaactcattagcaagttttgcc
cgtactaactcatacggcttcttagaaacgccataccgcaaggtgattgatggcgtgatt
actgacgaagtggaatacttgtcagcgattgaagaaggtcgttatgtcattgcacaggca
aacatcgaagttgatgcaaatggccgcatggttgaagagcagatcgcctgtcgtcataaa
ggtgaatctacctttatgcgcgcatctgatattcaatacatggacgtatcgccacaacag
attatttctgttgctgcatcactgatcccgttcttagaacacgacgacgctaaccgtgca
ttgatgggtgcgaacatgcaacgtcaagccgtacccacactgcgctctgaaaagccatta
gtcggtactggtattgaacgtacgctagctgttgattctggtgttgtagttgttgctaag
cgtggtggttatatcgactacgttgatgcgagccgtatcgttgttaaagtcaatgaagat
gagctacgtccaggcgaagcgggtatcgacatttataacctgactaaatacacccggtct
aaccaaaatacttgtatcaaccagcgcccttgttgtgccgttggtgagccagtcgttcgt
ggtgacgtgttagcagacggtccgtctactgacttaggtgacttagctcttggccagaac
atgcgcatcgcgttcatgccttggaacggttacaacttcgaagactcgatcttaatttct
gagcgcgtagcacaggaagaccgtttcaccactatccacatccaagagctgtcttgtatt
gctcgtgataccaaactgggtagcgaagaaatcaccgctgatattccaaacgtaggtgaa
tctgctctgtcgaaactcgacgaatcaggtatcgtttatattggtgcagaagtgaagggt
ggcgatattctggtcggtaaagtgacgccaaaaggcgaaactcagctaacaccagaagag
aagttactccgtgctatcttcggtgagaaagcgtctgatgtgaaagacagctcactgcgt
gtacctaactctgttaagggcactatcatcgacgttcaggtatttacccgtgacggcgtt
gaaaaagataaacgtgcagttgaaatcgaagagatgcacatcgctcaagcacgtaaagac
ttaagcgaagagttcaagatccttgaagaaggtgtattgagccgtgctcgtaacctattg
ttaggtgcaggtttcacagaaacacaaatcgcagcgatgccacgtaaggatgtattggtt
caagttattgacgatgaagcaaaacaaactgaacttgagcaattagctgagcagcatgaa
gagctgaaagcagacttcgataagaagtttgaaattaaacgtcgcaagatcacccaaggt
gatgacttggcgccaggcgtactgaagatcgttaaggtttacttagcggttaagcgtact
atccaacctggtgacaagatggcgggtcgtcatggtaacaaaggtgttatctctaagatt
tgcccaatcgaagacatgccatatgacgaacaaggtaatccagtagacatcgtattgaac
ccactaggtgttccgtcacggatgaacattggtcaggtacttgaagtccatatgggcgcc
gccgctaaaggtattggtaacaagatcactgcaatgcttgaagaacagcgcgagctggct
gaagtacgcggttacatcaaacaagtgtatgagttaggtgacgaagtgcagcagcgcgtc
gatatcgattcattcaccgatgatgaagtgatgcgtcttgcccaaaacttgaagggtggt
atcccgattgcgactcctgcattcgacggtgctaaagagaaagagatcaagcagatgctt
gagcttgcaggcttgccaacctctggtcagctgaagttgtatgatggtcgtaccggtaac
gaatttgagcgtcaagtaaccgttggttacatgtacatgctcaaactgaaccacttagtt
gatgacaagatgcacgcccgttctaccggttcgtacagcttagtgactcaacaaccactg
ggcggtaaagctcagttcggtggtcagcgtttcggtgagatggaagtgtgggcactagaa
gcatacggtgccgcttatacgcttcaagaaatgctcactgtgaaatcggatgacgttaac
ggtcgtactcagatgtataagaacatcgtcgacggtaaccatcagatgcaacctggcatg
ccagagtccttcaacgtgttactgaaggagatccgttcactcggtattaatatcgagttg
gatcaggaataa
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integrated database retrieval system
