Schistosoma haematobium (urinary blood fluke): MS3_00006190
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Entry
MS3_00006190 CDS
T05004
Symbol
PBRM1
Name
(RefSeq) Protein polybromo-1
KO
K11757
protein polybromo-1
Organism
shx
Schistosoma haematobium (urinary blood fluke)
Pathway
shx03082
ATP-dependent chromatin remodeling
Brite
KEGG Orthology (KO) [BR:
shx00001
]
09120 Genetic Information Processing
09126 Chromosome
03082 ATP-dependent chromatin remodeling
MS3_00006190 (PBRM1)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
shx03021
]
MS3_00006190 (PBRM1)
03036 Chromosome and associated proteins [BR:
shx03036
]
MS3_00006190 (PBRM1)
Transcription machinery [BR:
shx03021
]
Eukaryotic type
RNA polymerase II system
Coactivators
BAF/PBAF complex
MS3_00006190 (PBRM1)
Chromosome and associated proteins [BR:
shx03036
]
Eukaryotic type
Chromatin remodeling factors
PBAF complex
MS3_00006190 (PBRM1)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Bromodomain
BAH
DUF7877
HMG_box
HMG_box_2
HMG_WDHD1
Motif
Other DBs
NCBI-GeneID:
24593638
NCBI-ProteinID:
XP_012797639
UniProt:
A0A095C723
A0A922LHH3
LinkDB
All DBs
Position
2:11072347..11110510
Genome browser
AA seq
2116 aa
AA seq
DB search
MPKRNNPESPTDSVTGVSGDESQSSSVTTRKRCRLANASQLDLCQELFDRIRAYRGEDGS
LSETFMRLPTRRSNPDYYEAVREPMDLARIQAKIKACEYESVDQMATDVNLIVANTKAFY
PASTTEFAKAVELQDVFGHERQVLQSITTKSTDSTTSSTSSSVTDRRATRRRPFVTEERD
EEEAETLSIAASDDSRIAPSEVSTINLTSSQPSSTQLDNPYELLFASIAKYVGENDRPLA
PTFTHLPSRELYPVYYVVIKEPIDLRMIARRISSGKYNSMDELERDFLLLTRNAKTFNEP
KSVIYQDAATLARILKGKRSEAEHPPVRTNRERGKRASRLNYIPHEVVEQFASMPDLSDP
PDSSSQIDECTEAAFELSGDDEDTRATGTSQSCSSVASMSIKRKRGRPRRNPYPEDTIKR
SPSREPLSPASMHSQYSTSATGELGGTNLPHSCASRAHRRLQEKLLQVVLDALNEDGQPM
STPFFRLPSRRLYPDYYEEITNPLCLSSIKKKIKRYEYTSLDTVLMDLDIVFNNAQQYNV
EQSAIHQDSIRLQEIAHKKCIELKNSEIALNIKPDNPDTVPFSPNGNNLTVSSTTLSEGI
NYPQYDQTPLRRSGHQLVTGEEATLKRLQNLYKTVYYFRANDGHYPRDTFVSLPSRDVHP
DYYQVISNPIDLTMIKHKMDEGKYSSHDEMVLDLQLMFNNAWNYNEEGSSVYNDAKLLDS
IVKKRLRTFVSYNGNVNRPITSRSSLTTEPLTQQLDGSNIQSHASLVNTVPAVHHQQSGQ
PTCSLLQRVMLELFQAVREYQINGRVLSNPFMRLPTRNELPTYYEFIKKPIELQSVAKQL
VQMKYTDFEEFAGELFLMFDNACRFNEPDSQIYADTLILHRVCLAKRSLLLSAHQQSLSI
PPCVAPDVSTGLRRLLTNLHNAMLTACDADGRGLVDSLIAGDGTESMLTSVTAARLAALH
RAVAEGSYHRLDSLQSDWLGILARARIGEGSDQPAEVKNPCPTKQQRLDAAELAHRWVRL
RDELCHRRSGTQTSPNNESGSVLPSHVVLYSPALSYTEAALERDITEENANHKLPVYDDE
NGEETLNPLSDGECELKHFEARGQTYHVGDYVYVEPMRPNVTQCHIGRITRISRVEHSLS
KIEEQIPNKDQSKRENSCDNIESSVKVDHPYTINVRLSMYLRPAEAHPSRRRRLLAAEVF
RTALGETVQINQIMGRCLVMHISQFIRYKPKNLEERDVFICESQFSITSQLFTKVRDWNI
PLPTGIELEARSTPFVPTRLPPNEPLGNALEQVNNSLFVQMHYPLPQTLKSIVLEDLTET
EGTVVYEQYVHENGFSVKLGDFLYVPSTNGSSERSIVRVDKLWKSCAQNAILFTGPWFVT
SSSVDHLPTRLFYPKEVFLTGADHATYALASATGKCYVMRPCDYSQARPTEIPEHDIYMC
DSKYFETEKVIRKLKKGLKKFQFTSNNIHEDEFYFFPQQIMPRKDASPLLAQASTEPLQN
DQLNRPVSLAFTCALAAAAGTTTNMVAAPMISLPNLSPVDAAKQTDRIPTGLIGESSGSS
PLIGHSTNPVVGHTPVNVLPTSNNALVHGITSSAQLDALTRAFIENNVDRTGKKRKIRKP
PSGYVLYAGEIRKKLLQERPDAPFGEISREVGLLWRQMPTAQRDLYEQKAHLIRQHMAEE
EMQMKAREQEQVQLHIQQQIAATCISSHNISGTIPLQSSATAINPSSSSRMPVTATAATM
QFYQTPTGQVIQIVHASSTTPSVVGHNALPAQTVTASLAQPANIVQTTYATIPAIASACP
VATPTHQVVYQLSNQQHGILPNGTVGSGTPQQPFYQPQLHPQTQQQPQRVLVASSVCSTP
TIMGTVIGSGTTVPPVLPVGTNTGPSMPNVQQAQILLGSTGSVSSTGFPALAQGGLVTTT
TPTLNQPLLHQGVAVAAVGAPHIVQPPGPTLGACSQDYAPQVQPQYQLVQQVPQSQPLAP
NVMASVSVVPGTQFIQSQPQTIPTQPQTGRPSSPMFVSVPPRTSRVLHSEIYQRYISRLR
KNTPGGLGDWHNQLSASLDTAPPVQPNIANQLIGNFFTDPKKVQSCSVTEALWNLRDYLL
EDALKIRLRCLNAAEC
NT seq
6351 nt
NT seq
+upstream
nt +downstream
nt
atgccgaagcgcaacaacccggaatctcctactgattcggtaactggagtgtcgggagat
gagtctcaatcgagcagtgtaacaactcgtaaacgatgtcgtctggctaatgcttcgcag
ttggatttgtgtcaagaactgtttgatcgaattcgggcatatcgtggggaggatggctca
ttatctgaaacatttatgcgtctaccgacaagaaggtcaaatccagattattatgaagca
gtaagagaacctatggatttagctcgtattcaagcaaaaattaaggcatgtgagtatgaa
agcgttgatcaaatggctacggacgttaatttaatagtagccaatacaaaagcattctat
ccagcctcaacaactgagttcgccaaagctgttgaattacaagatgtttttggccacgag
cgtcaggttcttcaatcaataactaccaagagtactgattccactacaagttcaacaagc
agtagcgttactgataggcgtgcaactcgcaggcgtccattcgttaccgaagaacgagat
gaagaagaggctgaaactttgtcaatcgcagcttcagatgattcacgtattgctccatca
gaagttagcactatcaatttaacatctagtcaaccaagttcaacacagttggataatcca
tatgaactattatttgcttctattgcaaaatatgtaggcgaaaatgatcgtccattagcc
ccaacatttactcatctaccatctagagagctttatcctgtgtactacgttgttatcaag
gagccaattgacttaagaatgattgccagacggatttcgtctggaaaatataattccatg
gatgagttggaaagagattttttactgttaactcggaatgctaaaacttttaacgaacca
aagtcagttatctaccaggatgcagcaacattggccagaattttgaagggtaaacgtagt
gaagcagaacatcctccagttcgaactaaccgggagcgtggaaagcgtgcatctcgttta
aattacataccacatgaggttgtggagcagtttgcttcaatgcctgacttatctgatcct
ccggacagttcaagccaaatagatgaatgtactgaagcagcttttgaactttctggggat
gatgaggatactcgagcaactggtacatctcaaagctgttcatctgtagcttcaatgtcc
ataaaaagaaaacgtggacgccctcgtcgtaatccctatcctgaagatacaataaaacga
agtccatcaagagaacctctttctccagcaagcatgcattctcagtatagtacaagtgca
actggtgaactaggtggaactaatttaccacattcatgtgcttcacgagcccatagacgc
ttacaagaaaaacttttacaagtcgtattggatgctcttaatgaagatggtcaaccaatg
tcaacaccatttttccgacttccttctagaagattatatcctgactactatgaggagatt
accaatccattatgcctctcgagtattaagaagaaaattaagagatatgaatacacttca
ttagatactgttctcatggatttagatatagtattcaacaatgctcaacaatataatgtt
gaacaaagtgcaatacatcaggattctattcgtttgcaagagattgcccataaaaagtgt
atagaacttaagaattcagaaatagcattgaacattaaaccagataatccagatacagtt
ccattcagtcctaatggaaataatctaactgtatcatcaactacactgtcagaaggcata
aattatccacaatatgatcaaactccacttagacgatctggacatcaattagttacagga
gaagaggctactttaaaaagactgcaaaatttatacaaaactgtttactattttcgcgca
aacgatggacattatcctcgagatacatttgtaagcttaccatcaagggatgtacatcca
gattattaccaagtaatttctaatccaatagatttaacaatgatcaaacataaaatggat
gaaggaaaatactcgtcacacgatgaaatggttcttgatcttcaattgatgtttaacaat
gcttggaattataatgaagaaggttcgtcagtttataatgatgcaaagcttttggattcg
attgttaaaaagcgcttgaggacttttgtctcatataatggcaatgttaatcgaccaata
acttctcgtagttcacttactacggaacctttaacacaacagttggatggttcaaatatt
cagtcacatgctagtttagtcaatactgttcctgctgttcatcatcaacaatctggtcaa
ccaacttgttcactcttacaacgtgtcatgttggagctttttcaggcagttcgtgaatat
caaatcaacgggagagttttatctaatccgtttatgcgtttaccaactagaaatgagctt
ccaacttattatgagtttattaagaaacccatagaattacaaagtgtggctaaacaactg
gttcaaatgaaatatacggattttgaagagttcgctggtgaactttttctgatgtttgac
aacgcatgcagatttaatgaacctgattcacagatttatgcggatacactgatacttcat
cgggtttgtcttgccaagcgatcattattattgtctgcccatcagcagtcactttcaata
cctccatgtgttgctcctgatgtttctactggcttacgtcgtctgctgactaatcttcat
aatgcaatgttaacggcttgcgatgcagatggtcgaggattagtagattcattaatagct
ggtgatggtactgaatctatgcttacttcagtgactgcagctcgtttggctgcgcttcat
cgtgcagtggcagaaggttcttatcatcgtcttgatagtcttcagtcagactggcttggg
atattggctagagcccgaatcggagaaggatctgatcaaccagcggaagtgaaaaatcct
tgccctactaaacaacaacgattagatgctgctgaattagctcaccgttgggttcgtctt
agggatgaattatgccatcggagatcgggaactcaaacttcaccaaataatgagtctgga
tctgtattaccttctcatgtggttttgtacagtcctgccttgtcgtatacagaagcagcc
ttagaacgtgatattactgaagaaaatgcaaaccataaacttccagtttatgatgatgag
aacggagaagaaactttaaatccactttcagatggagaatgcgaattgaaacatttcgaa
gcacgtggtcaaacgtatcatgttggagattatgtatatgttgaaccgatgcgacccaat
gttactcaatgccatattggtcgcataacacgtattagccgggtagagcattcgctgtcc
aaaatcgaagaacaaatacctaataaagatcaatcgaaaagggaaaacagttgtgataac
attgaatcgtctgtgaaggtcgaccatccttatacaatcaatgttcgactgtctatgtat
ttacgaccagctgaagcacatccttcacgtcgaaggcgtcttttagccgctgaagttttt
cgtacagctcttggtgagacagttcaaattaatcaaataatgggacgttgtcttgtgatg
catatttcgcaattcattcgttacaagccaaaaaatcttgaagaacgtgatgtatttatt
tgtgaatctcagttctccattacatcccagttatttacgaaagtcagggactggaatatt
ccacttccgactggtattgaattagaagctagatctaccccatttgtaccaacacgttta
cctccaaatgaacctttaggaaatgccttagaacaggttaataacagtttgttcgttcaa
atgcattatcctttgcctcaaactttgaaatccattgttcttgaggatcttactgaaact
gaaggaactgtagtttatgagcaatatgttcatgagaatggattttcagtgaaactgggc
gattttctgtatgtcccctccactaatggatcttctgaacgttctattgtgcgagtcgac
aaactatggaaatcctgcgctcaaaatgctattttatttactggaccatggttcgttact
tcatcttcagtagatcatttaccaacacgtttattttatcctaaagaagtatttcttact
ggggctgatcatgctacttatgcgcttgcttcagctacagggaaatgttatgttatgcgt
ccatgtgattactcccaggctcgccccactgaaataccggagcatgatatttacatgtgt
gattcaaaatattttgaaactgagaaagtaattcgtaaacttaagaaaggattaaaaaaa
tttcaatttacatcaaacaatatacatgaagatgaattttatttctttccccaacaaatc
atgcctcgaaaagatgcatcacctcttttggctcaagcatctactgaaccacttcagaat
gatcaattaaatcgtccagtgtctctggcatttacttgcgcacttgcagcagcagccgga
actactaccaatatggttgctgctccaatgatttctcttcccaatttatcacctgttgat
gcagcgaaacaaactgaccgcatacctactggattaataggtgagagctcaggatctagt
ccacttataggacatagtacaaatccagtagtgggtcacacaccagttaacgttttacct
accagtaataatgcattagttcatggtataacttcatcagctcaactcgatgcgcttact
cgagctttcatagaaaataacgtagatcgtacaggtaaaaagaggaaaatccgtaaacca
ccgtcaggttatgttttatacgctggtgaaattagaaagaagttattacaagaacgacct
gatgctccattcggcgaaatatctcgtgaagttggtcttctgtggcgtcaaatgcccact
gctcaacgtgatttatatgaacaaaaggcgcatctaattagacaacatatggctgaagaa
gaaatgcaaatgaaagccagagaacaagaacaagttcaacttcatattcaacagcaaata
gctgctacatgtatttcatcacataacattagtggaacaatacctcttcagtcttctgct
acagctattaatccgtcttcgtcatctagaatgcctgtcactgctacagctgctactatg
cagttttatcaaacaccgactggtcaagtcattcaaattgtccatgcctcctcaacaaca
cctagtgtagttgggcataatgcgttgccagctcaaacagttactgcatctcttgctcag
cctgctaatattgttcaaactacatatgcgacaatacctgcaattgcctcggcttgtcca
gttgccactccaactcatcaggttgtttatcaactttcgaaccaacaacatggcattctt
ccgaatgggaccgtcggttctggaacaccacaacaaccgttttatcaacctcaacttcac
ccacaaactcaacaacagccacaacgggttttggttgcatctagcgtgtgttctacaccc
actataatgggtactgttattggatcaggaactactgtaccacccgttttacctgtgggt
acaaatacaggtccttctatgcctaacgttcaacaggcccagatacttttaggttcaaca
ggatctgtatcttcaacagggtttccggctttagcacaaggtggtttagtaacaacgaca
actccgacattaaatcaacctctgttacaccaaggagtagctgttgcagccgtaggtgct
ccccatattgttcaaccacctggaccaactttgggagcttgttctcaagattatgcgcca
caagtacaaccgcagtaccagttggtacaacaagttcctcaaagtcaaccactcgctccg
aacgtaatggcttctgtttcagttgttccaggaacacaattcattcaatctcaaccccaa
accattccaactcaacctcaaacgggccgcccatcttctccaatgtttgtatcggttcca
cctcgaacttctcgtgtacttcattctgaaatttaccagcgttacattagtcgtttacgt
aagaatactccaggtggattaggtgattggcataaccaattgtcagcttctctagataca
gctccaccagttcaaccaaatatagctaatcaattaataggaaatttctttactgatcct
aaaaaggttcaaagttgttcagtaactgaagcattatggaatttacgtgattatttatta
gaggatgctctaaaaattcgtttacgttgtttaaatgctgcagaatgttaa
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integrated database retrieval system
