Ruegeria pomeroyi: SPO3508
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Entry
SPO3508 CDS
T00215
Symbol
rpoB
Name
(GenBank) DNA-directed RNA polymerase, beta subunit
KO
K03043
DNA-directed RNA polymerase subunit beta [EC:
2.7.7.6
]
Organism
sil
Ruegeria pomeroyi
Pathway
sil03020
RNA polymerase
Brite
KEGG Orthology (KO) [BR:
sil00001
]
09120 Genetic Information Processing
09121 Transcription
03020 RNA polymerase
SPO3508 (rpoB)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
sil03021
]
SPO3508 (rpoB)
03400 DNA repair and recombination proteins [BR:
sil03400
]
SPO3508 (rpoB)
Enzymes [BR:
sil01000
]
2. Transferases
2.7 Transferring phosphorus-containing groups
2.7.7 Nucleotidyltransferases
2.7.7.6 DNA-directed RNA polymerase
SPO3508 (rpoB)
Transcription machinery [BR:
sil03021
]
Prokaryotic type
Bacterial type
RNA polymerase
Core subunits
SPO3508 (rpoB)
DNA repair and recombination proteins [BR:
sil03400
]
Prokaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TCR (transcription coupled repair) factors
DNA-directed RNA polymerase complex (RNAP)
SPO3508 (rpoB)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNA_pol_Rpb2_6
RNA_pol_Rpb2_3
RNA_pol_Rpb2_2
RNA_pol_Rpb2_7
RNA_pol_Rpb2_45
RNA_pol_Rpb2_1
Motif
Other DBs
NCBI-ProteinID:
AAV96733
UniProt:
Q5LMQ5
LinkDB
All DBs
Position
complement(3715817..3719953)
Genome browser
AA seq
1378 aa
AA seq
DB search
MAQTFLGQKRLRKYYGKIREVLEMPNLIEVQKSSYDLFLNSGDAPQPLDGEGIMGVFQSV
FPIKDFNETSVLEFVKYELEKPKYDVEECMQRDMTYSAPLKVTLRLIVFDVDEDTGAKSV
KDIKEQDVFMGDMPLMTPNGTFIVNGTERVIVSQMHRSPGVFFDHDKGKTHSSGKLLFAC
RIIPYRGSWLDFEFDAKDIVFARIDRRRKLPVTTLLYALGLDQEGIMDAYFKTVSYRLEK
KRGWVTPFFPERVRGTRPTYDLIDAASGEVIAEAGKKVTPRAVKKLIEEGSVTDLLVPFD
HIVGKFAAKDIINEETGAIYVEAGDELTLEYDKDGDLIGGTVKELIDNGVTNIPVLDIDN
INVGPYIRNTMAQDKNMNRETALMDIYRVMRPGEPPTVEAASALFDTLFFDSERYDLSAV
GRVKMNMRLDLDAADTQRTLRREDIIACIKALVELRDGKGDIDDIDHLGNRRVRSVGELM
ENQYRVGLLRMERAIKERMSSVEIDTVMPQDLINAKPAAAAVREFFGSSQLSQFMDQTNP
LSEVTHKRRLSALGPGGLTRERAGFEVRDVHPTHYGRMCPIETPEGPNIGLINSLATFAR
VNKYGFIETPYRVVKGGQVTDEVHYMSATEEMRHTVAQANATLDENGKFVNELVNTRQAG
DYTLAPMESVDLIDVSPKQLVSVAASLIPFLENDDANRALMGSNMQRQAVPLLRAEAPLV
GTGIEEKVAIDSGAAIQAKRAGIIDQIDAQRIVIRATEDLELGDAGVDIYRMRKFQRSNQ
NTCINQRPLVKVGQQVSKGEVIADGPSTDMGELALGKNVVVAFMPWNGYNYEDSILISER
IARDDVFTSIHIEEFEVAARDTKLGPEEITRDIPNVGEEALRNLDEAGIVYIGAEVQPGD
ILVGKITPKGESPMTPEEKLLRAIFGEKASDVRDTSLRVKPGDYGTVVEVRVFNRHGVDK
DERALQIEREEVERLARDRDDELAILDRNIYARLKSLILGKTAVKGPKGIKPGSEITEEL
LETLTRGQWWMLALEGEQDAQIVEALNEQYELQKRALDARFEDKVEKVRRGDDLPPGVMK
MVKVFIAVKRKLQPGDKMAGRHGNKGVISKVVPMEDMPFLADGTPVDFCLNPLGVPSRMN
VGQILETHMGWAARGLGLNVDEALQEYRRSGDLTPVRDAMKHAYGEDVYAEGISGMDEDT
LVEAAGNVTRGVPIATPVFDGAKEADVNDALTRAGFDTSGQSVLFDGRTGEQFARPVTVG
IKYLLKLHHLVDDKIHARSTGPYSLVTQQPLGGKAQFGGQRFGEMEVWALEAYGAAYTLQ
EMLTVKSDDVAGRTKVYESIVKGEDNFEAGIPESFNVLVKEVRGLGLNMELLDAEVEE
NT seq
4137 nt
NT seq
+upstream
nt +downstream
nt
atggctcaaacgttccttggccagaaacgtcttcgcaaatactacggcaaaatccgcgaa
gtgctggaaatgccgaacctcatcgaggtccagaaatcctcctacgacctgttcctgaac
tccggcgatgcgcctcagccgctggatggcgaaggcatcatgggcgtgttccagtcggtc
ttcccgatcaaggatttcaacgaaaccagcgtgctggaattcgtcaaatacgagctggaa
aagccgaaatacgatgtcgaggagtgcatgcagcgcgacatgacctacagcgcgccgctg
aaggtcacgctgcgtctgatcgtgtttgatgtggacgaggacactggcgccaaatccgtc
aaggacatcaaggagcaggacgtgttcatgggcgacatgcccctgatgacgcccaacggc
accttcatcgtcaacggcaccgagcgtgtgatcgtttcgcagatgcaccgctcgcccggt
gtgttcttcgaccatgacaagggcaagacccactcttcgggcaagctgctctttgcctgc
cgcatcatcccgtatcgcggctcgtggctggacttcgaattcgacgccaaggacatcgtc
tttgcccgtatcgaccgtcgccgcaaactgccggtgacgaccctgctctatgcgctgggc
ctggatcaggaaggcatcatggatgcctatttcaagaccgtctcctatcgcctcgagaag
aagcgcggctgggtcacgccgttcttccccgagcgcgtgcgcggcacccgtccgacttat
gacctgatcgacgccgcctcgggcgaggtgatcgccgaagccggcaagaaggtcaccccg
cgcgcggtgaagaagctgatcgaagaaggcagcgtgaccgacctgctggtcccgttcgac
catatcgtcggcaagttcgcggccaaggacatcatcaacgaggaaaccggcgcgatctat
gtcgaggccggtgacgagctgacgctggaatatgacaaggatggcgatctgattggcggc
accgtcaaggagctgatcgacaacggcgtcaccaatatcccggtgctggatatcgacaac
atcaacgtcggtccctacatccgcaacaccatggcgcaggacaagaacatgaaccgggaa
accgcgctcatggacatctatcgcgtcatgcgcccgggcgagccgcccaccgtcgaggcc
gcttcggccctgttcgacaccctgttcttcgacagcgagcgctatgacctgtccgccgtg
ggccgggtcaagatgaacatgcgtctcgatctggatgccgccgacactcagcgcaccctg
cgccgcgaagacatcatcgcctgtatcaaggcactggtcgaactgcgcgacggcaagggt
gacatcgacgatatcgaccacctcggcaaccgccgggtgcgctcggtcggcgagctgatg
gaaaaccagtatcgcgtcgggctgctgcgcatggaacgcgccatcaaggagcgcatgtcc
tcggtcgagatcgacaccgtgatgccgcaggacctgatcaacgcgaaaccggccgcggcc
gccgtgcgtgaattcttcggttcctcgcagctgtcgcagttcatggaccagaccaacccg
ctgtccgaggtgacgcacaagcgtcgtctttcggcgcttgggccgggcggtctgacccgt
gagcgtgccggtttcgaggtgcgcgacgtgcacccgacccactatggccggatgtgcccc
attgaaacccccgaaggtccgaacatcggtctgatcaactcgctggccacctttgcccgc
gtgaacaaatacggcttcatcgagaccccctaccgcgtcgtcaagggcgggcaggtcacc
gatgaggtgcactatatgtccgcgaccgaggaaatgcgccacaccgtggcacaggccaac
gccaccttggacgagaatggcaagttcgtgaacgagctggtcaacacccgtcaggccggc
gactatacgctggccccgatggaaagcgtggacctgatcgacgtgtcgccgaaacagctg
gtttcggtcgccgcctcgctcatcccgttcctcgaaaacgacgacgccaaccgcgctctg
atgggctcgaacatgcagcgtcaggcggttccgcttctgcgggccgaggcgccgctggtc
ggcaccgggatcgaggaaaaggtggccatcgactcgggcgcggccatccaggccaagcgt
gcgggcatcatcgaccagatcgacgcgcagcggatcgtgattcgcgccaccgaggatctg
gaactgggcgatgcgggcgtcgacatctaccgcatgcgcaagttccagcgctcgaaccag
aacacctgcatcaaccagcgcccgctggtgaaggtgggtcagcaggtttccaagggcgag
gtcatcgccgacggtccctcgaccgatatgggtgaactggctctgggcaagaacgtggtc
gtcgccttcatgccgtggaacggctacaactacgaggactcgatcctgatctcggaacgc
atcgcgcgtgacgacgtattcacctcgatccatatcgaggaattcgaagttgccgcccgc
gacaccaagctggggccggaagagatcacccgcgacatcccgaacgtcggcgaggaagcc
ctgcgcaacctcgacgaggcggggatcgtctatatcggtgccgaggtgcagccgggcgac
attctggtgggcaagatcacgcctaagggcgaaagcccgatgaccccggaagaaaagctg
ctgcgcgccatcttcggcgaaaaggccagcgacgtgcgcgacacctcgctgcgcgtgaag
ccgggcgactacggcaccgtggtcgaggttcgcgtgttcaaccgccacggcgtcgacaag
gacgagcgtgcgctgcagatcgagcgcgaggaagtcgagcgtctggcccgtgaccgggac
gacgagctggcgatcttggaccgcaacatctatgcgcgtctgaagtcgctgatcctgggc
aagaccgcggtcaagggccccaagggcatcaagccgggttccgagatcaccgaagagctg
ctggaaaccctgacccgcggtcagtggtggatgctggctctggaaggtgagcaggatgcc
cagatcgtcgaagcgctgaacgagcagtacgaactgcaaaagcgcgccctggatgcccgt
ttcgaagacaaggtcgaaaaggtgcgtcgcggcgacgatctgcccccgggcgtgatgaag
atggtcaaggtcttcatcgcggtgaagcgcaagctgcagccgggcgacaagatggccggc
cgtcacggcaacaagggtgtgatttcgaaagtggtgccgatggaggacatgccgttcctc
gccgacgggaccccggtcgatttctgcctcaacccgctgggtgtgccgtcgcggatgaac
gtcggtcagatcctcgaaacccatatgggctgggccgcgcgcggtctgggcctgaatgtg
gacgaggcgctgcaggaataccgccgttcgggcgacctgaccccggtgcgcgacgcgatg
aagcatgcctatggtgaggatgtctatgccgagggtatctctggcatggacgaggacacg
ctggtcgaggccgcaggcaacgtcacccgtggcgttccgatcgcaacgccggtcttcgac
ggtgcaaaagaggcggatgtgaacgacgcgctgacacgcgccggtttcgatacctcgggc
cagtcggttctgttcgacgggcgtaccggtgaacagttcgcgcgccccgtcaccgtgggc
atcaagtatctgctcaagctgcaccacctggtcgacgacaagatccacgcacgttcgacc
ggcccctacagcctggtgacccagcagccgctcggcggcaaggcgcagttcggcggtcag
cgtttcggggaaatggaggtctgggctctggaagcctatggcgccgcctacaccctgcag
gagatgctgacggtgaagtcggacgacgtggccggccggaccaaggtctacgagagcatc
gtcaagggcgaggacaatttcgaggcgggcattcccgagagcttcaacgttctggtgaaa
gaagtccgcggcctcggcctgaacatggaactcctggatgcggaggttgaggagtga
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integrated database retrieval system
