Saccharolobus islandicus M.16.27: M1627_1457
Help
Entry
M1627_1457 CDS
T00900
Name
(GenBank) 3' exoribonuclease
KO
K12589
exosome complex component RRP42
Organism
sim
Saccharolobus islandicus M.16.27
Pathway
sim03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
sim00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
M1627_1457
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
sim03019
]
M1627_1457
Messenger RNA biogenesis [BR:
sim03019
]
Eukaryotic type
mRNA degradation factors
3'-5' decay
Core exosome factors
M1627_1457
Prokaryotic type
Archeal mRNA degradation factors
Exosome components
Cofactors
M1627_1457
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNase_PH
RNase_PH_C
TagH_SH3-like
DUF4959
Motif
Other DBs
NCBI-ProteinID:
ACP55339
UniProt:
C3N5R4
LinkDB
All DBs
Position
1407111..1407938
Genome browser
AA seq
275 aa
AA seq
DB search
MSSTPSNQNIIPLIKKESIVSLFEKGTRQDGRKLTDYRPLSITLDYAKKADGSALVKLGT
TMVLAGTKLEIDKPYEDTPNQGNLIVNVELLPLAYETFEPGPPDENAIELARVVDRSLRD
SKALDLTKLVIEPGKSVWTVWLDVYVLDYGGNVLDACTLASVAALHNTKVYKVEQDSNGF
RVNKNEVVGKLPLNHPVVTVSIAKVDKYLIVDPDLDEESIMDTKVSFSYTPDLKIVGIQK
SGKGSMSLQDIDQAENTARLVAVKLLEELKKQLGI
NT seq
828 nt
NT seq
+upstream
nt +downstream
nt
ttgtcttcaactccatcgaatcaaaatattatacctttaatcaagaaggaaagtatagta
agtctttttgagaaaggcactaggcaagacggaagaaaattaacggattatagacctctt
tctataaccctggattatgcaaaaaaggctgatggttctgcgttagttaagttaggcacg
acaatggtattagctgggacaaaacttgaaatagataaaccttatgaagatacgcctaac
caaggaaacctcattgtgaatgttgaactcctacctttagcctatgagacctttgaacct
gggcctccagatgagaatgctattgaattagctagagtagtagatagaagtttaagggat
tctaaagctctagatctaactaaacttgtaatagaacccggtaaaagtgtatggacagta
tggcttgacgtttacgtattagactatggtgggaatgtattggatgcatgtacgttggcc
tcagttgcagcattgcataatactaaagtgtataaggtagaacaagattctaatgggttt
agagtcaataaaaatgaagttgtgggtaaattaccattgaatcatccagtagttacagtg
tctatagcaaaagttgacaaatatttaatagttgatccagatttggatgaagagtcaata
atggacactaaggtttccttttcctatacgccagatctaaaaatagtggggattcaaaag
agtggaaagggcagtatgtcattacaagatattgatcaggctgagaatacagcaagatta
gtagctgtcaagcttttagaagaacttaaaaagcagttaggaatttaa
DBGET
integrated database retrieval system
